Wall clock time and date at job start Mon Mar 30 2020 04:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46903 * 2 1 4 4 C 1.50702 * 109.47164 * 120.00089 * 2 1 3 5 5 H 1.07998 * 119.99611 * 119.99596 * 4 2 1 6 6 C 1.37876 * 119.99896 * 300.00414 * 4 2 1 7 7 N 1.31504 * 120.00251 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99464 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47470 * 59.99739 * 8 6 4 10 10 H 1.48506 * 109.46881 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47150 * 299.99399 * 8 6 4 12 12 N 1.46498 * 109.46862 * 240.00401 * 2 1 3 13 13 C 1.44711 * 114.08424 * 120.02071 * 12 2 1 14 14 C 1.51874 * 112.93086 * 192.90137 * 13 12 2 15 15 H 1.09008 * 109.10242 * 55.03436 * 14 13 12 16 16 C 1.52991 * 109.11011 * 174.14049 * 14 13 12 17 17 N 1.45570 * 111.33095 * 294.56028 * 14 13 12 18 18 C 1.32525 * 122.51580 * 71.26959 * 17 14 13 19 19 O 1.21280 * 120.29025 * 184.50768 * 18 17 14 20 20 C 1.50321 * 119.53284 * 4.39055 * 18 17 14 21 21 C 1.31337 * 114.08418 * 299.99839 * 12 2 1 22 22 O 1.21283 * 116.49459 * 357.23787 * 21 12 2 23 23 H 1.08991 * 109.47296 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46915 * 299.99950 * 1 2 3 25 25 H 1.09003 * 109.46925 * 59.99334 * 1 2 3 26 26 H 0.96999 * 120.00169 * 180.02562 * 7 6 4 27 27 H 1.08996 * 108.79378 * 313.79118 * 13 12 2 28 28 H 1.09000 * 108.79391 * 72.13050 * 13 12 2 29 29 H 1.09006 * 109.47278 * 60.00160 * 16 14 13 30 30 H 1.09000 * 109.47486 * 180.02562 * 16 14 13 31 31 H 1.09004 * 109.47351 * 300.00385 * 16 14 13 32 32 H 0.97003 * 118.74251 * 251.24658 * 17 14 13 33 33 H 1.08995 * 109.15586 * 175.51639 * 20 18 17 34 34 H 1.08999 * 108.97350 * 56.42701 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8300 2.6034 8 14 2.3214 -1.1206 4.0078 9 1 3.8064 -1.1212 4.0081 10 1 1.8269 -0.4202 5.2204 11 1 1.8258 -2.5204 4.0075 12 7 2.0183 -0.6905 -1.1962 13 6 2.8383 0.1319 -2.0595 14 6 3.0711 -0.4918 -3.4246 15 1 2.1081 -0.7221 -3.8804 16 6 3.8183 0.5068 -4.3107 17 7 3.8542 -1.7146 -3.3214 18 6 3.3629 -2.8341 -2.8100 19 8 4.0746 -3.8059 -2.6683 20 6 1.9167 -2.8911 -2.4039 21 6 1.6317 -1.9424 -1.2878 22 8 0.9767 -2.3753 -0.3634 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8900 26 1 0.7095 1.1616 3.4844 27 1 2.3494 1.0969 -2.1932 28 1 3.8036 0.2916 -1.5791 29 1 4.7760 0.7536 -3.8523 30 1 3.9882 0.0651 -5.2926 31 1 3.2228 1.4134 -4.4186 32 1 4.7706 -1.7099 -3.6395 33 1 1.6749 -3.9043 -2.0830 34 1 1.2970 -2.6308 -3.2620 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261102588.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:46 Heat of formation + Delta-G solvation = -51.955099 kcal Electronic energy + Delta-G solvation = -18304.439217 eV Core-core repulsion = 15431.131922 eV Total energy + Delta-G solvation = -2873.307295 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.73836 -38.78285 -36.78666 -34.63132 -32.68227 -31.44552 -30.33002 -28.43537 -26.10425 -25.06828 -22.99813 -21.12617 -20.54503 -18.65879 -17.39099 -16.88429 -16.27398 -15.85310 -15.06723 -14.63263 -14.13571 -13.95810 -13.90320 -13.27057 -13.07292 -12.48423 -12.33861 -12.28502 -12.01451 -11.96668 -11.40863 -11.25957 -10.90107 -10.66826 -10.50281 -10.30021 -9.96326 -9.81352 -9.29166 -9.03828 -8.55586 -8.19616 -7.67077 -5.93489 -3.93643 2.61253 3.21458 3.40401 3.43035 3.49967 3.61396 3.81181 4.54141 4.61494 4.64410 4.72529 4.94054 5.24279 5.35419 5.39461 5.42686 5.53778 5.71968 5.80195 5.88440 6.03442 6.74610 6.78910 6.98374 7.08532 7.19612 7.26395 7.75274 7.90369 8.13236 8.24511 8.27559 8.66437 9.00674 9.15588 9.67610 11.12731 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.027890 B = 0.008459 C = 0.007695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.711379 B = 3309.161273 C = 3637.658573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.256 3.744 3 H 0.042 0.958 4 C -0.487 4.487 5 H 0.055 0.945 6 C 0.058 3.942 7 N -0.900 5.900 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.589 5.589 13 C 0.107 3.893 14 C 0.122 3.878 15 H 0.084 0.916 16 C -0.156 4.156 17 N -0.715 5.715 18 C 0.532 3.468 19 O -0.546 6.546 20 C -0.161 4.161 21 C 0.508 3.492 22 O -0.509 6.509 23 H 0.061 0.939 24 H 0.089 0.911 25 H 0.000 1.000 26 H 0.260 0.740 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.398 0.602 33 H 0.124 0.876 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.373 1.876 -14.727 15.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.156 3.844 3 H 0.060 0.940 4 C -0.526 4.526 5 H 0.074 0.926 6 C -0.142 4.142 7 N -0.541 5.541 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.321 5.321 13 C -0.018 4.018 14 C 0.016 3.984 15 H 0.102 0.898 16 C -0.214 4.214 17 N -0.367 5.367 18 C 0.318 3.682 19 O -0.424 6.424 20 C -0.204 4.204 21 C 0.292 3.708 22 O -0.385 6.385 23 H 0.080 0.920 24 H 0.107 0.893 25 H 0.019 0.981 26 H 0.070 0.930 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.234 0.766 33 H 0.143 0.857 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.104 1.217 -13.990 14.382 hybrid contribution 0.674 -0.271 0.614 0.952 sum 3.778 0.946 -13.376 13.932 Atomic orbital electron populations 1.22193 0.97757 1.01862 0.99736 1.19000 0.92038 0.92027 0.81340 0.94028 1.21123 1.30045 1.11551 0.89840 0.92644 1.24801 0.95428 0.95146 0.98790 1.69847 1.37517 1.23251 1.23453 0.86575 0.78857 0.80042 0.82037 1.20570 1.21406 1.20223 1.46889 1.49183 1.10744 1.25284 1.21363 0.96486 0.94511 0.89463 1.20997 0.96068 0.84973 0.96358 0.89805 1.21984 1.01298 0.98909 0.99179 1.45490 1.17142 1.10753 1.63312 1.19677 0.90032 0.82393 0.76095 1.90757 1.61160 1.35954 1.54492 1.21903 0.94340 1.03817 1.00371 1.18239 0.82739 0.82131 0.87663 1.90794 1.38721 1.73292 1.35676 0.92049 0.89271 0.98081 0.93027 0.89892 0.91502 0.91306 0.91435 0.90170 0.76641 0.85737 0.87322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.89 8.80 37.16 0.33 -3.56 16 2 C 0.26 6.30 2.45 -69.08 -0.17 6.13 16 3 H 0.04 1.05 7.59 -51.93 -0.39 0.65 16 4 C -0.49 -13.82 7.06 -34.44 -0.24 -14.07 16 5 H 0.06 1.67 7.18 -52.49 -0.38 1.29 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.90 -25.91 11.32 55.43 0.63 -25.28 16 8 Si 0.90 22.71 29.54 -169.99 -5.02 17.69 16 9 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 12 N -0.59 -11.75 2.81 -171.10 -0.48 -12.23 16 13 C 0.11 1.53 5.15 -5.57 -0.03 1.50 16 14 C 0.12 1.26 2.85 -69.01 -0.20 1.07 16 15 H 0.08 0.82 7.29 -51.92 -0.38 0.44 16 16 C -0.16 -1.05 9.20 37.15 0.34 -0.70 16 17 N -0.71 -8.79 5.06 -55.64 -0.28 -9.07 16 18 C 0.53 8.64 7.39 -12.16 -0.09 8.55 16 19 O -0.55 -10.85 17.90 5.56 0.10 -10.75 16 20 C -0.16 -2.61 5.30 -29.92 -0.16 -2.77 16 21 C 0.51 10.59 6.31 -13.19 -0.08 10.51 16 22 O -0.51 -13.06 12.10 5.55 0.07 -12.99 16 23 H 0.06 1.61 5.68 -51.93 -0.30 1.32 16 24 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 25 H 0.00 0.00 8.14 -51.93 -0.42 -0.42 16 26 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.08 1.06 7.93 -51.93 -0.41 0.65 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.40 4.21 8.45 -40.82 -0.35 3.86 16 33 H 0.12 2.07 8.02 -51.93 -0.42 1.65 16 34 H 0.11 1.34 7.55 -51.93 -0.39 0.95 16 LS Contribution 274.66 15.07 4.14 4.14 Total: -1.00 -34.57 274.66 -5.82 -40.39 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -4.57 Total: -0.12 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -0.40 Total: 8.23 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: -0.14 Total: -46.59 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: 0.17 Total: -23.74 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -34.57 -5.82 -40.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261102588.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.562 kcal (2) G-P(sol) polarization free energy of solvation -34.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds