Wall clock time and date at job start Mon Mar 30 2020 03:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.46990 * 2 1 4 4 C 1.50700 * 109.47652 * 120.00584 * 2 1 3 5 5 N 1.34363 * 125.86161 * 299.96061 * 4 2 1 6 6 C 1.31016 * 109.30030 * 180.02562 * 5 4 2 7 7 O 1.35505 * 125.76478 * 180.02562 * 6 5 4 8 8 N 1.35883 * 108.47073 * 359.75300 * 6 5 4 9 9 H 0.96997 * 126.47959 * 180.24590 * 8 6 5 10 10 C 1.34410 * 125.87295 * 119.99792 * 4 2 1 11 11 C 1.50707 * 126.53855 * 359.94288 * 10 4 2 12 12 H 1.09000 * 109.47028 * 325.00374 * 11 10 4 13 13 O 1.42899 * 109.46996 * 205.00120 * 11 10 4 14 14 C 1.53004 * 109.46792 * 85.00237 * 11 10 4 15 15 C 1.50695 * 109.46637 * 185.00046 * 14 11 10 16 16 H 1.08004 * 120.00546 * 0.27598 * 15 14 11 17 17 C 1.37885 * 119.99721 * 179.97438 * 15 14 11 18 18 N 1.31516 * 119.99913 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47326 * 90.00142 * 19 17 15 21 21 H 1.48506 * 109.46545 * 209.99892 * 19 17 15 22 22 H 1.48498 * 109.47210 * 329.99603 * 19 17 15 23 23 H 1.09003 * 109.47079 * 299.99539 * 1 2 3 24 24 H 1.09000 * 109.47393 * 59.99902 * 1 2 3 25 25 H 1.09006 * 109.47283 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47079 * 240.00461 * 2 1 3 27 27 H 1.08997 * 109.47578 * 300.00500 * 3 2 1 28 28 H 1.09003 * 109.46833 * 60.00310 * 3 2 1 29 29 H 1.09007 * 109.47004 * 179.97438 * 3 2 1 30 30 H 0.96695 * 114.00382 * 90.02286 * 7 6 5 31 31 H 0.96698 * 114.00063 * 300.00122 * 13 11 10 32 32 H 1.08992 * 109.47421 * 65.00092 * 14 11 10 33 33 H 1.08997 * 109.46955 * 304.99545 * 14 11 10 34 34 H 0.97000 * 119.99651 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 7 1.7822 -0.3553 2.5018 6 6 2.3771 -1.1962 3.3114 7 8 2.3446 -1.1497 4.6653 8 7 3.0274 -2.1263 2.5642 9 1 3.5494 -2.8724 2.8984 10 6 2.8084 -1.8079 1.2445 11 6 3.3327 -2.5515 0.0431 12 1 2.5900 -2.5235 -0.7542 13 8 3.5961 -3.9096 0.4012 14 6 4.6256 -1.8917 -0.4408 15 6 5.0838 -2.5576 -1.7126 16 1 4.5080 -3.3672 -2.1361 17 6 6.2351 -2.1292 -2.3390 18 7 6.6353 -2.7107 -3.4486 19 14 7.2269 -0.7238 -1.6106 20 1 8.2381 -1.2676 -0.6689 21 1 7.9128 0.0150 -2.7011 22 1 6.3183 0.1984 -0.8831 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6765 1.9564 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6142 -1.6466 5.0585 31 1 4.2495 -4.0107 1.1068 32 1 5.3958 -1.9982 0.3230 33 1 4.4449 -0.8335 -0.6295 34 1 7.4454 -2.4095 -3.8890 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261155162.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:13 Heat of formation + Delta-G solvation = -50.302781 kcal Electronic energy + Delta-G solvation = -17646.249908 eV Core-core repulsion = 14773.014263 eV Total energy + Delta-G solvation = -2873.235645 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.00464 -37.64924 -36.64604 -35.14601 -32.89696 -31.85810 -30.64807 -28.17680 -26.82159 -24.64468 -22.36420 -21.75905 -20.74907 -19.38673 -18.89237 -17.19604 -16.65385 -15.90218 -15.48351 -14.67246 -14.23822 -14.01917 -13.85626 -13.80588 -13.57833 -12.68168 -12.49058 -12.15657 -11.87636 -11.60114 -11.19944 -11.13824 -11.01157 -10.90750 -10.60076 -10.54569 -10.01516 -9.86154 -9.71861 -9.35198 -9.28740 -8.62111 -7.86927 -6.10475 -4.09600 1.99189 2.71567 3.12287 3.24456 3.33665 3.36774 4.03882 4.38173 4.87596 5.01053 5.04718 5.22545 5.27475 5.50556 5.62212 5.74295 5.84657 5.94319 6.12064 6.15518 6.21817 6.25042 6.34291 6.55594 6.58049 6.70886 6.92960 6.93772 7.09334 7.63374 7.76094 8.02720 8.15199 8.44569 8.97038 9.50228 11.02463 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.022546 B = 0.007869 C = 0.007173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.610428 B = 3557.554665 C = 3902.824153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.014 4.014 3 C -0.139 4.139 4 C 0.022 3.978 5 N -0.471 5.471 6 C 0.358 3.642 7 O -0.444 6.444 8 N -0.567 5.567 9 H 0.416 0.584 10 C -0.017 4.017 11 C 0.191 3.809 12 H 0.119 0.881 13 O -0.548 6.548 14 C -0.034 4.034 15 C -0.516 4.516 16 H 0.080 0.920 17 C 0.071 3.929 18 N -0.898 5.898 19 Si 0.873 3.127 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.265 1.265 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.090 0.910 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.395 0.605 31 H 0.361 0.639 32 H 0.012 0.988 33 H 0.032 0.968 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.470 2.908 11.600 15.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.034 4.034 3 C -0.197 4.197 4 C -0.106 4.106 5 N -0.201 5.201 6 C 0.058 3.942 7 O -0.244 6.244 8 N -0.184 5.184 9 H 0.254 0.746 10 C -0.132 4.132 11 C 0.131 3.869 12 H 0.136 0.864 13 O -0.351 6.351 14 C -0.072 4.072 15 C -0.553 4.553 16 H 0.098 0.902 17 C -0.131 4.131 18 N -0.536 5.536 19 Si 0.700 3.300 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.189 1.189 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.108 0.892 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.251 0.749 31 H 0.206 0.794 32 H 0.030 0.970 33 H 0.050 0.950 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.788 3.871 11.287 15.434 hybrid contribution 1.544 -0.496 1.098 1.959 sum -8.244 3.374 12.386 15.256 Atomic orbital electron populations 1.21751 0.94535 1.01551 1.01638 1.19517 0.95545 0.95729 0.92607 1.21747 1.01287 0.95102 1.01514 1.20159 1.02100 0.96101 0.92253 1.70236 1.22899 1.25991 1.00970 1.20146 0.99701 0.90403 0.83942 1.84919 1.53931 1.74333 1.11222 1.43564 1.42957 1.25193 1.06651 0.74620 1.22445 1.04291 1.01422 0.85029 1.20670 0.98351 0.79426 0.88446 0.86367 1.86615 1.63538 1.25905 1.59047 1.20260 0.91881 0.97372 0.97704 1.20953 1.09397 1.18891 1.06098 0.90228 1.24971 0.97180 0.96306 0.94657 1.69899 1.24004 1.41716 1.18018 0.86887 0.80692 0.83306 0.79092 1.20456 1.21139 1.18943 0.92349 0.92561 0.93018 0.89205 0.92521 0.92383 0.92691 0.74927 0.79361 0.96995 0.94952 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.17 37.15 0.34 -1.45 16 2 C -0.01 -0.22 3.28 -91.77 -0.30 -0.52 16 3 C -0.14 -2.05 9.18 37.16 0.34 -1.71 16 4 C 0.02 0.37 5.59 -82.84 -0.46 -0.09 16 5 N -0.47 -7.99 11.28 -10.93 -0.12 -8.11 16 6 C 0.36 5.35 9.49 -89.17 -0.85 4.51 16 7 O -0.44 -5.23 13.64 -18.21 -0.25 -5.48 16 8 N -0.57 -8.06 6.07 -10.26 -0.06 -8.13 16 9 H 0.42 4.64 8.39 -40.82 -0.34 4.30 16 10 C -0.02 -0.28 6.18 -81.39 -0.50 -0.78 16 11 C 0.19 3.60 2.91 -27.88 -0.08 3.52 16 12 H 0.12 2.26 7.38 -51.93 -0.38 1.88 16 13 O -0.55 -10.06 13.02 -35.23 -0.46 -10.52 16 14 C -0.03 -0.77 3.71 -27.88 -0.10 -0.88 16 15 C -0.52 -14.06 9.43 -34.44 -0.32 -14.38 16 16 H 0.08 2.38 7.99 -52.48 -0.42 1.96 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 19 Si 0.87 21.25 27.47 -169.99 -4.67 16.58 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.09 1.41 6.91 -51.93 -0.36 1.06 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.40 2.47 9.06 45.56 0.41 2.88 16 31 H 0.36 5.32 8.41 45.56 0.38 5.70 16 32 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 33 H 0.03 0.74 7.20 -51.93 -0.37 0.37 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 290.65 15.07 4.38 4.38 Total: -1.00 -33.39 290.65 -5.62 -39.02 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -3.18 Total: 8.44 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -2.04 Total: -9.88 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.59 Total: -42.54 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.71 Total: -16.00 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.39 -5.62 -39.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261155162.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.287 kcal (2) G-P(sol) polarization free energy of solvation -33.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds