Wall clock time and date at job start Mon Mar 30 2020 03:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 O 1.42895 * 109.47000 * 120.00066 * 2 1 3 5 5 C 1.42902 * 114.00006 * 90.00505 * 4 2 1 6 6 C 1.50695 * 109.47272 * 179.97438 * 5 4 2 7 7 N 1.29951 * 126.28382 * 90.02534 * 6 5 4 8 8 O 1.21300 * 110.24616 * 179.97438 * 7 6 5 9 9 C 1.33637 * 109.81561 * 359.97438 * 8 7 6 10 10 C 1.50700 * 126.55550 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.47364 * 269.98034 * 10 9 8 12 12 C 1.50692 * 109.47369 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00337 * 359.97438 * 12 11 10 14 14 C 1.37883 * 120.00263 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00344 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99603 * 359.97438 * 14 12 11 17 17 H 1.48508 * 109.46908 * 90.00042 * 16 14 12 18 18 H 1.48495 * 109.47144 * 209.99529 * 16 14 12 19 19 H 1.48491 * 109.47343 * 330.00180 * 16 14 12 20 20 N 1.31127 * 106.89882 * 359.76951 * 9 8 7 21 21 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 22 22 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 23 23 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 25 25 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 26 26 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 27 27 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 28 28 H 1.09000 * 109.46798 * 300.00022 * 5 4 2 29 29 H 1.09007 * 109.47360 * 59.99552 * 5 4 2 30 30 H 1.09003 * 109.46740 * 29.97625 * 10 9 8 31 31 H 1.08994 * 109.47558 * 149.97431 * 10 9 8 32 32 H 1.09008 * 109.46420 * 299.99503 * 11 10 9 33 33 H 1.08994 * 109.47275 * 59.99223 * 11 10 9 34 34 H 0.96998 * 120.00125 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2002 -2.0782 0.9885 6 6 2.7015 -2.6833 2.2744 7 7 1.9699 -3.1671 3.2332 8 8 2.6736 -3.5797 4.1309 9 6 3.9599 -3.3930 3.8205 10 6 5.1506 -3.7666 4.6654 11 6 5.5166 -2.5942 5.5778 12 6 6.7068 -2.9680 6.4231 13 1 7.1569 -3.9444 6.3203 14 6 7.2212 -2.0637 7.3279 15 7 8.2596 -2.3901 8.0660 16 14 6.4431 -0.3747 7.5053 17 1 5.3784 -0.4264 8.5393 18 1 7.4799 0.6078 7.9111 19 1 5.8522 0.0370 6.2066 20 7 3.9884 -2.8276 2.6377 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.2539 -2.5433 0.7123 29 1 2.9321 -2.2467 0.1985 30 1 4.9056 -4.6374 5.2735 31 1 5.9958 -4.0013 4.0186 32 1 5.7616 -1.7234 4.9696 33 1 4.6713 -2.3595 6.2246 34 1 8.6212 -1.7540 8.7027 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292607151.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:44 Heat of formation + Delta-G solvation = 5.455126 kcal Electronic energy + Delta-G solvation = -16675.617463 eV Core-core repulsion = 13804.799663 eV Total energy + Delta-G solvation = -2870.817801 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.29717 -38.70809 -35.74442 -34.67034 -33.06515 -32.36464 -30.60963 -27.88614 -27.32446 -26.22668 -23.32357 -21.81253 -21.60481 -20.45881 -17.88949 -17.49054 -16.86943 -16.72773 -15.60346 -15.48731 -14.40858 -14.13263 -13.97902 -13.61314 -13.18896 -12.88384 -12.74121 -12.45482 -12.28811 -12.00152 -11.86098 -11.69477 -11.40528 -11.08268 -10.98747 -10.79117 -10.53895 -10.19979 -9.89877 -9.86578 -9.46204 -9.35871 -8.61396 -6.12352 -4.12935 1.40286 2.30407 3.18147 3.29171 3.37016 3.42037 3.42356 4.04468 4.20911 4.40084 4.61776 4.74328 4.89196 4.93499 5.09592 5.21815 5.31682 5.44141 5.47660 5.52829 5.58339 5.84314 5.89863 5.95602 5.97174 6.04480 6.25819 6.45244 6.92630 7.03891 7.17110 7.62740 8.39383 8.42232 8.89565 9.48537 11.00189 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.027367 B = 0.005089 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.868452 B = 5500.962479 C = 6180.436040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.082 3.918 3 C -0.151 4.151 4 O -0.375 6.375 5 C 0.162 3.838 6 C 0.161 3.839 7 N -0.380 5.380 8 O 0.076 5.924 9 C 0.210 3.790 10 C -0.019 4.019 11 C -0.008 4.008 12 C -0.525 4.525 13 H 0.079 0.921 14 C 0.073 3.927 15 N -0.897 5.897 16 Si 0.875 3.125 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.265 1.265 20 N -0.484 5.484 21 H 0.065 0.935 22 H 0.066 0.934 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.027 0.973 33 H 0.019 0.981 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.485 2.495 -16.054 21.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.024 3.976 3 C -0.208 4.208 4 O -0.293 6.293 5 C 0.084 3.916 6 C -0.112 4.112 7 N -0.090 5.090 8 O 0.016 5.984 9 C -0.009 4.009 10 C -0.058 4.058 11 C -0.047 4.047 12 C -0.563 4.563 13 H 0.097 0.903 14 C -0.129 4.129 15 N -0.535 5.535 16 Si 0.702 3.298 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.190 1.190 20 N -0.218 5.218 21 H 0.084 0.916 22 H 0.085 0.915 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.045 0.955 33 H 0.038 0.962 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.019 2.841 -16.173 21.591 hybrid contribution -0.325 0.788 0.135 0.863 sum -14.344 3.629 -16.038 21.820 Atomic orbital electron populations 1.22325 0.95836 1.02472 1.02756 1.22135 0.93689 0.94002 0.87730 1.21868 1.02217 0.94144 1.02561 1.88027 1.86711 1.18521 1.36033 1.20308 0.99838 0.82124 0.89341 1.25265 0.86185 1.01288 0.98452 1.74562 1.19272 1.16355 0.98820 1.85289 1.17224 1.59239 1.36602 1.29681 0.87717 0.92219 0.91315 1.20559 0.87307 1.02076 0.95864 1.19631 0.97757 0.92983 0.94320 1.20925 1.12465 1.02761 1.20174 0.90338 1.24936 0.94546 0.98357 0.95059 1.69887 1.23471 1.36030 1.24132 0.86841 0.79338 0.84458 0.79138 1.20061 1.21120 1.18954 1.71918 1.19558 1.18886 1.11417 0.91612 0.91470 0.92421 0.91818 0.91677 0.91647 0.91095 0.90739 0.90027 0.88380 0.87509 0.95502 0.96232 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.48 9.53 37.16 0.35 -1.13 16 2 C 0.08 0.81 3.34 -26.73 -0.09 0.72 16 3 C -0.15 -1.37 9.56 37.16 0.36 -1.01 16 4 O -0.37 -5.30 9.97 -35.23 -0.35 -5.65 16 5 C 0.16 2.12 6.37 36.00 0.23 2.35 16 6 C 0.16 2.78 7.85 -156.37 -1.23 1.55 16 7 N -0.38 -6.86 12.16 30.90 0.38 -6.48 16 8 O 0.08 1.38 11.31 18.12 0.20 1.59 16 9 C 0.21 3.87 7.77 -13.06 -0.10 3.77 16 10 C -0.02 -0.35 5.78 -27.88 -0.16 -0.51 16 11 C -0.01 -0.19 4.02 -27.89 -0.11 -0.30 16 12 C -0.53 -14.25 9.66 -34.44 -0.33 -14.58 16 13 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 14 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 15 N -0.90 -26.89 13.96 55.43 0.77 -26.12 16 16 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 17 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 19 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 20 N -0.48 -9.12 11.55 -9.87 -0.11 -9.23 16 21 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.06 0.47 7.87 -51.93 -0.41 0.06 16 24 H 0.06 0.51 7.79 -51.93 -0.40 0.11 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.80 7.87 -51.93 -0.41 0.40 16 29 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 30 H 0.10 1.62 8.14 -51.93 -0.42 1.19 16 31 H 0.11 1.88 8.14 -51.93 -0.42 1.46 16 32 H 0.03 0.64 7.20 -51.92 -0.37 0.27 16 33 H 0.02 0.45 7.57 -51.93 -0.39 0.05 16 34 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 296.19 15.07 4.46 4.46 Total: -1.00 -31.49 296.19 -5.45 -36.94 By element: Atomic # 1 Polarization: -0.27 SS G_CDS: -4.95 Total: -5.22 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -1.18 Total: -7.16 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 1.04 Total: -41.83 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: -0.15 Total: -4.06 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.49 -5.45 -36.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292607151.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.399 kcal (2) G-P(sol) polarization free energy of solvation -31.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds