Wall clock time and date at job start Mon Mar 30 2020 04:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47376 * 2 1 4 4 C 1.50705 * 109.47034 * 120.00269 * 2 1 3 5 5 H 1.07993 * 119.99775 * 120.00312 * 4 2 1 6 6 C 1.37878 * 119.99901 * 299.99395 * 4 2 1 7 7 N 1.31513 * 119.99752 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99887 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47047 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47070 * 120.00307 * 8 6 4 11 11 H 1.48494 * 109.47007 * 240.00252 * 8 6 4 12 12 N 1.46904 * 109.46869 * 239.99779 * 2 1 3 13 13 C 1.46907 * 110.99496 * 85.00086 * 12 2 1 14 14 C 1.53001 * 109.46789 * 179.97438 * 13 12 2 15 15 H 1.09004 * 110.66253 * 56.47549 * 14 13 12 16 16 C 1.54228 * 110.49822 * 179.47234 * 14 13 12 17 17 C 1.51315 * 103.55212 * 118.81161 * 16 14 13 18 18 O 1.21230 * 125.39621 * 179.74458 * 17 16 14 19 19 N 1.33875 * 109.21157 * 359.76876 * 17 16 14 20 20 C 1.46497 * 122.76728 * 180.02562 * 19 17 16 21 21 C 1.33879 * 114.47007 * 359.97438 * 19 17 16 22 22 O 1.21233 * 125.39135 * 179.97438 * 21 19 17 23 23 H 1.08992 * 109.47044 * 59.99791 * 1 2 3 24 24 H 1.09006 * 109.47043 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46998 * 299.99801 * 1 2 3 26 26 H 0.97008 * 119.99495 * 179.97438 * 7 6 4 27 27 H 1.00900 * 111.00112 * 208.95031 * 12 2 1 28 28 H 1.08995 * 109.46880 * 60.00220 * 13 12 2 29 29 H 1.08993 * 109.47207 * 299.99398 * 13 12 2 30 30 H 1.08994 * 110.80706 * 0.19696 * 16 14 13 31 31 H 1.08998 * 110.53952 * 237.28958 * 16 14 13 32 32 H 1.08998 * 109.47194 * 270.00302 * 20 19 17 33 33 H 1.09004 * 109.46866 * 29.99599 * 20 19 17 34 34 H 1.09003 * 109.47401 * 149.99594 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4828 7 7 0.9429 0.8296 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.1484 -2.2858 3.6037 10 1 3.1474 -0.1859 4.8161 11 1 1.1679 -1.5866 4.8165 12 7 2.0196 -0.6926 -1.1995 13 6 2.0824 0.2226 -2.3469 14 6 2.5961 -0.5329 -3.5742 15 1 1.9681 -1.3989 -3.7835 16 6 2.6589 0.4039 -4.7978 17 6 4.1262 0.4061 -5.1677 18 8 4.6168 1.0208 -6.0902 19 7 4.7966 -0.3786 -4.3150 20 6 6.2437 -0.5894 -4.4020 21 6 4.0358 -0.9541 -3.3757 22 8 4.4361 -1.6993 -2.5073 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 0.7084 1.1608 3.4845 27 1 2.9173 -1.1205 -1.0288 28 1 2.7588 1.0461 -2.1182 29 1 1.0870 0.6162 -2.5525 30 1 2.3283 1.4083 -4.5338 31 1 2.0579 0.0058 -5.6154 32 1 6.4482 -1.4468 -5.0432 33 1 6.7157 0.2990 -4.8219 34 1 6.6441 -0.7770 -3.4057 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309510161.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:11 Heat of formation + Delta-G solvation = -66.150362 kcal Electronic energy + Delta-G solvation = -17382.773348 eV Core-core repulsion = 14508.850500 eV Total energy + Delta-G solvation = -2873.922848 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.93176 -38.65091 -36.29346 -35.80071 -33.95660 -32.03366 -29.03976 -27.18824 -26.15672 -25.17869 -23.46597 -21.65436 -19.89686 -19.37876 -17.35188 -17.13406 -16.46891 -16.14394 -15.18247 -14.71744 -14.59704 -14.26489 -13.89651 -13.60367 -13.32476 -13.00186 -12.70839 -12.67048 -12.26880 -11.94663 -11.48019 -11.14693 -10.87411 -10.73105 -10.54548 -10.27416 -10.17019 -10.00012 -9.86199 -9.75152 -8.81657 -8.47786 -7.33500 -6.02631 -4.08256 1.47606 2.47509 2.67852 3.29958 3.37701 3.43540 4.03853 4.16356 4.33105 4.44039 4.77628 5.04010 5.16060 5.28731 5.33783 5.36298 5.41695 5.45850 5.53404 5.74289 6.05824 6.13716 6.73111 6.84290 7.10540 7.18799 7.25780 7.46127 7.73636 7.80125 7.89629 8.27276 8.36245 8.66641 9.02344 9.57787 11.03873 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.036374 B = 0.005662 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.598107 B = 4943.766147 C = 5425.683509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.211 3.789 3 H 0.001 0.999 4 C -0.516 4.516 5 H 0.061 0.939 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.283 1.283 12 N -0.691 5.691 13 C 0.076 3.924 14 C -0.121 4.121 15 H 0.132 0.868 16 C -0.154 4.154 17 C 0.529 3.471 18 O -0.493 6.493 19 N -0.579 5.579 20 C 0.067 3.933 21 C 0.526 3.474 22 O -0.462 6.462 23 H 0.004 0.996 24 H 0.032 0.968 25 H 0.081 0.919 26 H 0.260 0.740 27 H 0.343 0.657 28 H 0.023 0.977 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.358 -0.727 -14.188 14.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.103 3.897 3 H 0.018 0.982 4 C -0.555 4.555 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.209 1.209 12 N -0.325 5.325 13 C -0.055 4.055 14 C -0.143 4.143 15 H 0.150 0.850 16 C -0.194 4.194 17 C 0.319 3.681 18 O -0.366 6.366 19 N -0.323 5.323 20 C -0.074 4.074 21 C 0.314 3.686 22 O -0.331 6.331 23 H 0.023 0.977 24 H 0.052 0.948 25 H 0.099 0.901 26 H 0.070 0.930 27 H 0.164 0.836 28 H 0.041 0.959 29 H 0.102 0.898 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.192 -0.959 -14.205 14.841 hybrid contribution 1.178 0.119 1.084 1.605 sum 5.370 -0.841 -13.121 14.202 Atomic orbital electron populations 1.21723 0.97751 0.99445 0.99367 1.19120 0.92681 0.92275 0.85578 0.98188 1.21314 1.31243 1.12541 0.90375 0.92062 1.24914 0.95053 0.95009 0.99061 1.69906 1.36798 1.22988 1.23347 0.86463 0.78634 0.79691 0.82786 1.19673 1.21127 1.20939 1.60788 1.33661 1.32218 1.05872 1.21820 1.00312 0.93521 0.89837 1.22258 0.93772 1.01327 0.96925 0.85010 1.22571 0.93383 1.03893 0.99523 1.20896 0.90324 0.76549 0.80320 1.90749 1.75327 1.42116 1.28399 1.46711 1.10870 1.44548 1.30220 1.21904 0.78212 1.03078 1.04243 1.21039 0.89311 0.78616 0.79594 1.90785 1.78573 1.32141 1.31588 0.97681 0.94845 0.90086 0.93007 0.83645 0.95868 0.89774 0.85909 0.86069 0.91136 0.89722 0.89401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.03 9.19 37.16 0.34 -2.68 16 2 C 0.21 5.31 2.60 -68.86 -0.18 5.13 16 3 H 0.00 0.01 7.80 -51.93 -0.40 -0.39 16 4 C -0.52 -14.38 8.59 -34.44 -0.30 -14.68 16 5 H 0.06 1.72 7.62 -52.49 -0.40 1.32 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.45 11.32 55.43 0.63 -24.83 16 8 Si 0.90 21.53 29.54 -169.99 -5.02 16.50 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 N -0.69 -14.61 6.30 -107.95 -0.68 -15.29 16 13 C 0.08 1.22 4.80 -3.82 -0.02 1.20 16 14 C -0.12 -1.50 3.36 -90.83 -0.31 -1.80 16 15 H 0.13 1.49 8.14 -51.93 -0.42 1.07 16 16 C -0.15 -1.43 6.66 -26.94 -0.18 -1.61 16 17 C 0.53 6.33 8.08 -11.09 -0.09 6.24 16 18 O -0.49 -7.09 17.48 5.60 0.10 -6.99 16 19 N -0.58 -7.17 2.95 -122.73 -0.36 -7.53 16 20 C 0.07 0.69 10.58 59.85 0.63 1.32 16 21 C 0.53 7.54 7.29 -11.09 -0.08 7.46 16 22 O -0.46 -8.22 15.63 5.60 0.09 -8.14 16 23 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 24 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.34 7.64 6.09 -39.29 -0.24 7.40 16 28 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 29 H 0.08 1.27 7.44 -51.93 -0.39 0.89 16 30 H 0.12 1.02 7.74 -51.93 -0.40 0.62 16 31 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.80 7.83 -51.93 -0.41 0.39 16 34 H 0.09 0.92 7.83 -51.93 -0.41 0.51 16 LS Contribution 285.80 15.07 4.31 4.31 Total: -1.00 -31.78 285.80 -5.80 -37.58 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -4.59 Total: 2.18 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -0.27 Total: 2.20 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: -0.42 Total: -47.65 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.19 Total: -15.12 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.78 -5.80 -37.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309510161.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.571 kcal (2) G-P(sol) polarization free energy of solvation -31.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds