Wall clock time and date at job start Mon Mar 30 2020 04:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47376 * 2 1 4 4 C 1.50705 * 109.47034 * 120.00269 * 2 1 3 5 5 H 1.07993 * 119.99775 * 120.00312 * 4 2 1 6 6 C 1.37878 * 119.99901 * 299.99395 * 4 2 1 7 7 N 1.31513 * 119.99752 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99887 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47047 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47070 * 120.00307 * 8 6 4 11 11 H 1.48494 * 109.47007 * 240.00252 * 8 6 4 12 12 N 1.46904 * 109.46869 * 239.99779 * 2 1 3 13 13 C 1.46907 * 110.99496 * 85.00086 * 12 2 1 14 14 C 1.53001 * 109.46789 * 179.97438 * 13 12 2 15 15 H 1.09004 * 110.66253 * 56.47549 * 14 13 12 16 16 C 1.54228 * 110.49822 * 179.47234 * 14 13 12 17 17 C 1.51315 * 103.55212 * 118.81161 * 16 14 13 18 18 O 1.21230 * 125.39621 * 179.74458 * 17 16 14 19 19 N 1.33875 * 109.21157 * 359.76876 * 17 16 14 20 20 C 1.46497 * 122.76728 * 180.02562 * 19 17 16 21 21 C 1.33879 * 114.47007 * 359.97438 * 19 17 16 22 22 O 1.21233 * 125.39135 * 179.97438 * 21 19 17 23 23 H 1.08992 * 109.47044 * 59.99791 * 1 2 3 24 24 H 1.09006 * 109.47043 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46998 * 299.99801 * 1 2 3 26 26 H 0.97008 * 119.99495 * 179.97438 * 7 6 4 27 27 H 1.00900 * 111.00112 * 208.95031 * 12 2 1 28 28 H 1.08995 * 109.46880 * 60.00220 * 13 12 2 29 29 H 1.08993 * 109.47207 * 299.99398 * 13 12 2 30 30 H 1.08994 * 110.80706 * 0.19696 * 16 14 13 31 31 H 1.08998 * 110.53952 * 237.28958 * 16 14 13 32 32 H 1.08998 * 109.47194 * 270.00302 * 20 19 17 33 33 H 1.09004 * 109.46866 * 29.99599 * 20 19 17 34 34 H 1.09003 * 109.47401 * 149.99594 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4828 7 7 0.9429 0.8296 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.1484 -2.2858 3.6037 10 1 3.1474 -0.1859 4.8161 11 1 1.1679 -1.5866 4.8165 12 7 2.0196 -0.6926 -1.1995 13 6 2.0824 0.2226 -2.3469 14 6 2.5961 -0.5329 -3.5742 15 1 1.9681 -1.3989 -3.7835 16 6 2.6589 0.4039 -4.7978 17 6 4.1262 0.4061 -5.1677 18 8 4.6168 1.0208 -6.0902 19 7 4.7966 -0.3786 -4.3150 20 6 6.2437 -0.5894 -4.4020 21 6 4.0358 -0.9541 -3.3757 22 8 4.4361 -1.6993 -2.5073 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 0.7084 1.1608 3.4845 27 1 2.9173 -1.1205 -1.0288 28 1 2.7588 1.0461 -2.1182 29 1 1.0870 0.6162 -2.5525 30 1 2.3283 1.4083 -4.5338 31 1 2.0579 0.0058 -5.6154 32 1 6.4482 -1.4468 -5.0432 33 1 6.7157 0.2990 -4.8219 34 1 6.6441 -0.7770 -3.4057 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309510161.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:10 Heat of formation + Delta-G solvation = -89.234219 kcal Electronic energy + Delta-G solvation = -17383.774339 eV Core-core repulsion = 14508.850500 eV Total energy + Delta-G solvation = -2874.923839 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.95680 -39.76888 -37.86588 -36.96103 -35.40469 -33.74453 -30.65239 -28.25630 -27.45905 -27.09300 -24.76563 -22.70624 -21.75373 -20.46429 -18.69340 -18.34335 -17.89354 -17.32105 -16.88145 -16.24460 -15.82515 -15.41001 -15.17515 -15.15424 -14.53105 -14.42658 -13.77401 -13.73461 -13.54484 -13.49984 -13.08730 -12.79695 -12.57013 -12.47986 -12.18413 -12.06327 -11.78769 -11.56138 -11.01183 -10.87853 -10.81542 -10.57302 -9.06360 -8.14232 -6.27322 0.43524 1.39545 1.41600 1.52162 1.53772 1.67067 2.41177 3.09386 3.14538 3.18161 3.33433 3.79235 4.04943 4.18835 4.31447 4.36676 4.43525 4.62267 4.67840 4.70273 4.84257 4.92331 4.99438 5.12801 5.25578 5.50833 5.66839 5.74721 5.89740 6.21974 6.27186 6.46295 6.69929 6.79948 6.99023 7.42868 8.91228 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.036374 B = 0.005662 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.598107 B = 4943.766147 C = 5425.683509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.213 3.787 3 H -0.029 1.029 4 C -0.539 4.539 5 H 0.050 0.950 6 C 0.016 3.984 7 N -0.915 5.915 8 Si 0.958 3.042 9 H -0.272 1.272 10 H -0.280 1.280 11 H -0.276 1.276 12 N -0.692 5.692 13 C 0.073 3.927 14 C -0.111 4.111 15 H 0.149 0.851 16 C -0.136 4.136 17 C 0.531 3.469 18 O -0.516 6.516 19 N -0.581 5.581 20 C 0.060 3.940 21 C 0.523 3.477 22 O -0.504 6.504 23 H 0.033 0.967 24 H 0.028 0.972 25 H 0.055 0.945 26 H 0.263 0.737 27 H 0.335 0.665 28 H 0.015 0.985 29 H 0.101 0.899 30 H 0.140 0.860 31 H 0.160 0.840 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.899 -0.839 -15.364 15.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 H -0.011 1.011 4 C -0.578 4.578 5 H 0.068 0.932 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.784 3.216 9 H -0.197 1.197 10 H -0.205 1.205 11 H -0.201 1.201 12 N -0.325 5.325 13 C -0.057 4.057 14 C -0.132 4.132 15 H 0.167 0.833 16 C -0.176 4.176 17 C 0.322 3.678 18 O -0.391 6.391 19 N -0.324 5.324 20 C -0.080 4.080 21 C 0.313 3.687 22 O -0.377 6.377 23 H 0.052 0.948 24 H 0.047 0.953 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.154 0.846 28 H 0.033 0.967 29 H 0.119 0.881 30 H 0.158 0.842 31 H 0.178 0.822 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.732 -1.058 -15.416 15.896 hybrid contribution 1.362 0.185 1.394 1.958 sum 5.094 -0.873 -14.022 14.944 Atomic orbital electron populations 1.21528 0.96982 0.99055 0.99505 1.18944 0.93233 0.90649 0.86662 1.01107 1.21615 1.31546 1.12559 0.92046 0.93190 1.25663 0.95187 0.95701 1.01805 1.70012 1.37369 1.23900 1.24111 0.85505 0.78245 0.78573 0.79300 1.19658 1.20532 1.20137 1.60711 1.33139 1.32918 1.05684 1.21938 1.01361 0.92956 0.89412 1.22181 0.92423 1.02206 0.96387 0.83313 1.22639 0.91841 1.04200 0.98901 1.21315 0.91293 0.75615 0.79560 1.90750 1.75972 1.42983 1.29363 1.46808 1.11612 1.44160 1.29807 1.22058 0.77408 1.04206 1.04372 1.21391 0.90365 0.77874 0.79054 1.90765 1.79419 1.34175 1.33314 0.94768 0.95308 0.92666 0.92771 0.84579 0.96696 0.88103 0.84237 0.82239 0.89572 0.88881 0.90007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.41 9.19 71.98 0.66 -4.75 16 2 C 0.21 10.84 2.60 44.17 0.11 10.96 16 3 H -0.03 -1.59 7.80 -2.39 -0.02 -1.61 16 4 C -0.54 -30.47 8.59 25.60 0.22 -30.25 16 5 H 0.05 2.87 7.62 -2.91 -0.02 2.84 16 6 C 0.02 0.88 5.30 84.66 0.45 1.33 16 7 N -0.91 -52.61 11.32 21.45 0.24 -52.36 16 8 Si 0.96 44.34 29.54 68.60 2.03 46.36 16 9 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 N -0.69 -28.98 6.30 -495.43 -3.12 -32.10 16 13 C 0.07 2.24 4.80 86.30 0.41 2.66 16 14 C -0.11 -2.45 3.36 -10.93 -0.04 -2.49 16 15 H 0.15 2.87 8.14 -2.38 -0.02 2.85 16 16 C -0.14 -2.03 6.66 30.46 0.20 -1.82 16 17 C 0.53 11.41 8.08 87.99 0.71 12.12 16 18 O -0.52 -13.73 17.48 -2.88 -0.05 -13.78 16 19 N -0.58 -13.57 2.95 -780.02 -2.30 -15.87 16 20 C 0.06 1.19 10.58 127.77 1.35 2.55 16 21 C 0.52 14.47 7.29 87.99 0.64 15.11 16 22 O -0.50 -18.09 15.63 -2.88 -0.05 -18.14 16 23 H 0.03 1.39 7.45 -2.39 -0.02 1.37 16 24 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 25 H 0.05 2.94 6.07 -2.38 -0.01 2.93 16 26 H 0.26 14.29 8.31 -92.70 -0.77 13.52 16 27 H 0.34 15.08 6.09 -89.69 -0.55 14.53 16 28 H 0.01 0.49 8.05 -2.39 -0.02 0.47 16 29 H 0.10 2.76 7.44 -2.39 -0.02 2.74 16 30 H 0.14 1.74 7.74 -2.39 -0.02 1.72 16 31 H 0.16 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.09 1.67 7.83 -2.38 -0.02 1.65 16 34 H 0.08 1.71 7.83 -2.39 -0.02 1.69 16 Total: -1.00 -69.11 285.80 2.04 -67.07 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.56 Total: 13.40 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 4.73 Total: 5.42 kcal Atomic # 7 Polarization: -95.15 SS G_CDS: -5.18 Total: -100.33 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -0.10 Total: -31.92 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -69.11 2.04 -67.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309510161.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.161 kcal (2) G-P(sol) polarization free energy of solvation -69.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds