Wall clock time and date at job start Mon Mar 30 2020 03:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47273 * 2 1 4 4 H 1.09005 * 109.46932 * 304.99889 * 3 2 1 5 5 N 1.46494 * 109.47224 * 64.99967 * 3 2 1 6 6 C 1.34782 * 120.00160 * 204.82273 * 5 3 2 7 7 O 1.21441 * 119.99784 * 0.02562 * 6 5 3 8 8 C 1.48828 * 120.00072 * 179.97438 * 6 5 3 9 9 O 1.21503 * 120.00004 * 0.02562 * 8 6 5 10 10 N 1.34774 * 120.00027 * 179.97438 * 8 6 5 11 11 C 1.36114 * 120.00009 * 179.97438 * 10 8 6 12 12 H 1.07998 * 119.99962 * 0.02562 * 11 10 8 13 13 C 1.39583 * 120.00247 * 180.02562 * 11 10 8 14 14 N 1.31018 * 119.99723 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00511 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46753 * 90.00126 * 15 13 11 17 17 H 1.48493 * 109.47362 * 210.00397 * 15 13 11 18 18 H 1.48497 * 109.47060 * 330.00617 * 15 13 11 19 19 C 1.53001 * 109.47115 * 184.99926 * 3 2 1 20 20 C 1.53004 * 117.49611 * 133.28804 * 19 3 2 21 21 C 1.53002 * 117.50000 * 64.63120 * 19 3 2 22 22 H 1.08998 * 109.46919 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46849 * 59.99938 * 1 2 3 24 24 H 1.08998 * 109.46990 * 300.00321 * 1 2 3 25 25 H 1.09000 * 109.46849 * 120.00062 * 2 1 3 26 26 H 1.09004 * 109.47094 * 240.00139 * 2 1 3 27 27 H 0.97002 * 119.99850 * 24.81751 * 5 3 2 28 28 H 0.96994 * 119.99911 * 0.02562 * 10 8 6 29 29 H 0.97004 * 119.99730 * 180.02562 * 14 13 11 30 30 H 1.08997 * 115.54953 * 278.95817 * 19 3 2 31 31 H 1.08991 * 117.50276 * 0.02562 * 20 19 3 32 32 H 1.09006 * 117.49145 * 145.01788 * 20 19 3 33 33 H 1.09003 * 117.50007 * 214.98015 * 21 19 3 34 34 H 1.09009 * 117.49735 * 359.97438 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 7 1.6525 2.0975 1.2517 6 6 1.5292 3.4388 1.3005 7 8 1.7389 4.1043 0.3065 8 6 1.1350 4.1041 2.5720 9 8 0.9247 3.4382 3.5663 10 7 1.0122 5.4454 2.6208 11 6 0.6511 6.0538 3.7836 12 1 0.4634 5.4619 4.6672 13 6 0.5233 7.4429 3.8341 14 7 0.7506 8.1610 2.7621 15 14 0.0285 8.2781 5.4301 16 1 1.2459 8.6103 6.2129 17 1 -0.7195 9.5242 5.1254 18 1 -0.8341 7.3636 6.2205 19 6 3.5649 1.4443 -0.1257 20 6 4.1889 2.4040 -1.1409 21 6 4.1675 0.8995 -1.4222 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.4846 1.5658 2.0455 28 1 1.1804 5.9770 1.8272 29 1 0.6622 9.1264 2.7973 30 1 4.1130 1.2635 0.7989 31 1 3.5132 3.0344 -1.7188 32 1 5.1478 2.8543 -0.8841 33 1 5.1123 0.3606 -1.3506 34 1 3.4776 0.5394 -2.1856 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000324061503.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:08 Heat of formation + Delta-G solvation = -83.196980 kcal Electronic energy + Delta-G solvation = -17166.018766 eV Core-core repulsion = 14291.356721 eV Total energy + Delta-G solvation = -2874.662044 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.39365 -39.60387 -38.36794 -36.44439 -35.68023 -33.55341 -32.99037 -28.48042 -27.38974 -24.65584 -23.41947 -22.64429 -21.25870 -21.24301 -20.34686 -18.69463 -17.88794 -17.08690 -16.65975 -16.37177 -15.78986 -15.72378 -15.37808 -14.81780 -14.65231 -14.36096 -13.73375 -13.66736 -13.37683 -12.97384 -12.57809 -12.43623 -12.28866 -12.26775 -12.25844 -12.10489 -11.76369 -11.66578 -11.36832 -10.86021 -10.27666 -10.20573 -10.11531 -8.65916 -6.11105 0.63822 1.40843 1.47220 1.55826 1.84854 2.29561 2.39621 2.88158 3.15819 3.34225 3.66356 3.90719 4.03844 4.13080 4.15484 4.26852 4.34280 4.49533 4.79006 4.84844 4.90791 5.02678 5.08894 5.14438 5.21951 5.25009 5.28647 5.41279 5.51383 5.68841 6.19560 6.42127 6.83183 7.06335 7.29319 7.80569 8.50014 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.037585 B = 0.005381 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.791000 B = 5202.657017 C = 5624.555307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C 0.172 3.828 4 H 0.071 0.929 5 N -0.686 5.686 6 C 0.520 3.480 7 O -0.561 6.561 8 C 0.389 3.611 9 O -0.618 6.618 10 N -0.512 5.512 11 C -0.346 4.346 12 H 0.098 0.902 13 C -0.005 4.005 14 N -0.897 5.897 15 Si 1.010 2.990 16 H -0.265 1.265 17 H -0.267 1.267 18 H -0.264 1.264 19 C -0.180 4.180 20 C -0.191 4.191 21 C -0.140 4.140 22 H 0.077 0.923 23 H 0.049 0.951 24 H 0.039 0.961 25 H 0.081 0.919 26 H 0.104 0.896 27 H 0.413 0.587 28 H 0.400 0.600 29 H 0.289 0.711 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.356 -13.413 -6.683 15.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C 0.068 3.932 4 H 0.089 0.911 5 N -0.338 5.338 6 C 0.303 3.697 7 O -0.440 6.440 8 C 0.174 3.826 9 O -0.508 6.508 10 N -0.146 5.146 11 C -0.476 4.476 12 H 0.116 0.884 13 C -0.209 4.209 14 N -0.535 5.535 15 Si 0.831 3.169 16 H -0.190 1.190 17 H -0.191 1.191 18 H -0.188 1.188 19 C -0.199 4.199 20 C -0.229 4.229 21 C -0.177 4.177 22 H 0.096 0.904 23 H 0.069 0.931 24 H 0.058 0.942 25 H 0.099 0.901 26 H 0.122 0.878 27 H 0.250 0.750 28 H 0.235 0.765 29 H 0.099 0.901 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.132 0.868 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.358 -13.181 -6.831 15.222 hybrid contribution -0.154 0.919 0.609 1.114 sum 3.204 -12.262 -6.222 14.119 Atomic orbital electron populations 1.21812 0.95568 1.02600 1.01366 1.21763 0.96007 0.92836 1.04859 1.20811 0.92295 0.94532 0.85567 0.91103 1.45701 1.67989 1.05170 1.14973 1.20016 0.77547 0.84095 0.88051 1.90668 1.51304 1.64978 1.37013 1.19730 0.89552 0.83630 0.89706 1.90539 1.58904 1.63984 1.37338 1.41654 1.54329 1.05481 1.13127 1.19972 1.45879 0.91150 0.90596 0.88400 1.26542 0.95237 0.96213 1.02898 1.69557 1.44827 1.08428 1.30684 0.84690 0.78860 0.77443 0.75892 1.18959 1.19101 1.18776 1.22687 0.94916 1.06858 0.95455 1.22957 1.02234 0.93970 1.03699 1.23038 1.03049 0.94709 0.96906 0.90407 0.93146 0.94188 0.90057 0.87815 0.74968 0.76534 0.90132 0.88042 0.90197 0.89333 0.86826 0.87173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 9.80 71.98 0.71 -2.37 16 2 C -0.12 -2.15 5.42 30.59 0.17 -1.98 16 3 C 0.17 4.54 2.16 44.99 0.10 4.64 16 4 H 0.07 2.15 7.38 -2.38 -0.02 2.13 16 5 N -0.69 -23.24 4.52 -444.45 -2.01 -25.25 16 6 C 0.52 22.99 7.83 87.08 0.68 23.67 16 7 O -0.56 -26.60 16.13 -3.53 -0.06 -26.65 16 8 C 0.39 20.28 7.82 87.08 0.68 20.96 16 9 O -0.62 -34.02 16.03 -3.72 -0.06 -34.08 16 10 N -0.51 -28.59 5.25 -308.88 -1.62 -30.21 16 11 C -0.35 -19.75 9.67 84.35 0.82 -18.93 16 12 H 0.10 5.73 7.15 -2.91 -0.02 5.71 16 13 C 0.00 -0.25 5.51 85.14 0.47 0.22 16 14 N -0.90 -48.81 13.03 21.76 0.28 -48.53 16 15 Si 1.01 41.15 29.56 68.60 2.03 43.18 16 16 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 17 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 18 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 19 C -0.18 -4.43 5.36 -10.79 -0.06 -4.49 16 20 C -0.19 -4.98 10.18 30.62 0.31 -4.67 16 21 C -0.14 -2.52 9.73 30.62 0.30 -2.22 16 22 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.04 0.95 7.75 -2.39 -0.02 0.93 16 25 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.10 1.41 7.45 -2.39 -0.02 1.40 16 27 H 0.41 13.24 8.06 -92.71 -0.75 12.49 16 28 H 0.40 22.62 7.35 -92.71 -0.68 21.94 16 29 H 0.29 14.35 8.30 -92.71 -0.77 13.58 16 30 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.08 2.38 8.08 -2.39 -0.02 2.36 16 32 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.11 1.61 8.14 -2.39 -0.02 1.60 16 34 H 0.11 1.64 7.88 -2.38 -0.02 1.62 16 Total: -1.00 -66.14 297.57 2.42 -63.72 By element: Atomic # 1 Polarization: 43.30 SS G_CDS: -0.31 Total: 42.99 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 4.17 Total: 14.83 kcal Atomic # 7 Polarization: -100.64 SS G_CDS: -3.35 Total: -103.99 kcal Atomic # 8 Polarization: -60.62 SS G_CDS: -0.12 Total: -60.74 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -66.14 2.42 -63.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324061503.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.481 kcal (2) G-P(sol) polarization free energy of solvation -66.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds