Wall clock time and date at job start Mon Mar 30 2020 03:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47026 * 2 1 4 4 C 1.52997 * 109.46862 * 239.99911 * 2 1 3 5 5 N 1.46501 * 115.54901 * 271.06967 * 4 2 1 6 6 C 1.34782 * 120.00057 * 296.56438 * 5 4 2 7 7 O 1.21436 * 120.00029 * 354.59124 * 6 5 4 8 8 C 1.48834 * 119.99775 * 174.58603 * 6 5 4 9 9 O 1.21500 * 120.00017 * 0.02562 * 8 6 5 10 10 N 1.34775 * 119.99791 * 180.02562 * 8 6 5 11 11 C 1.36114 * 120.00252 * 179.97438 * 10 8 6 12 12 H 1.08004 * 120.00009 * 359.97438 * 11 10 8 13 13 C 1.39581 * 120.00417 * 180.02562 * 11 10 8 14 14 N 1.31019 * 119.99970 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00324 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47130 * 59.99944 * 15 13 11 17 17 H 1.48499 * 109.47243 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47095 * 300.00219 * 15 13 11 19 19 C 1.52996 * 117.49736 * 125.36665 * 4 2 1 20 20 C 1.52998 * 117.50110 * 56.74335 * 4 2 1 21 21 H 1.08992 * 109.47316 * 55.47120 * 1 2 3 22 22 H 1.09002 * 109.47148 * 295.46802 * 1 2 3 23 23 H 1.09002 * 109.47263 * 175.47145 * 1 2 3 24 24 H 1.09007 * 109.46918 * 119.99928 * 2 1 3 25 25 H 1.08999 * 109.47212 * 59.99661 * 3 2 1 26 26 H 1.08992 * 109.46785 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.46764 * 299.99752 * 3 2 1 28 28 H 0.97001 * 120.00004 * 116.56880 * 5 4 2 29 29 H 0.97001 * 120.00053 * 359.97438 * 10 8 6 30 30 H 0.96999 * 119.99917 * 180.02562 * 14 13 11 31 31 H 1.08998 * 117.50238 * 359.97438 * 19 4 2 32 32 H 1.08998 * 117.50394 * 145.02050 * 19 4 2 33 33 H 1.09004 * 117.49677 * 214.97581 * 20 4 2 34 34 H 1.08997 * 117.49592 * 359.97438 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 2.2273 -2.1677 -1.1115 6 6 3.1367 -2.6496 -0.2412 7 8 3.8687 -1.8870 0.3565 8 6 3.2435 -4.1164 -0.0126 9 8 2.5113 -4.8794 -0.6109 10 7 4.1525 -4.5983 0.8580 11 6 4.2499 -5.9397 1.0675 12 1 3.5985 -6.6179 0.5363 13 6 5.1910 -6.4387 1.9695 14 7 5.9809 -5.6160 2.6143 15 14 5.3252 -8.2797 2.2565 16 1 5.6596 -8.9569 0.9778 17 1 6.3930 -8.5489 3.2527 18 1 4.0300 -8.7968 2.7664 19 6 3.0160 0.0350 -2.1526 20 6 1.5737 -0.1956 -2.6083 21 1 -0.3633 0.5824 -0.8466 22 1 -0.3633 0.4419 0.9278 23 1 -0.3634 -1.0245 -0.0811 24 1 1.8933 -0.5139 0.8901 25 1 1.6766 1.9564 0.8899 26 1 3.1299 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6969 -2.7786 -1.6466 29 1 4.7373 -3.9891 1.3353 30 1 6.6351 -5.9628 3.2409 31 1 3.2945 1.0466 -1.8573 32 1 3.7978 -0.5435 -2.6447 33 1 1.4068 -0.9259 -3.4001 34 1 0.9034 0.6639 -2.6124 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379717613.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:06 Heat of formation + Delta-G solvation = -56.181969 kcal Electronic energy + Delta-G solvation = -17327.630217 eV Core-core repulsion = 14454.139631 eV Total energy + Delta-G solvation = -2873.490586 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.97367 -38.33579 -36.74942 -34.36089 -33.20728 -32.10475 -31.32567 -27.25042 -25.98715 -23.96312 -22.50081 -22.18008 -19.62839 -18.47464 -18.31625 -17.07476 -16.38631 -15.44660 -15.22413 -14.62852 -14.30412 -14.04191 -13.86925 -13.22758 -13.05386 -12.76512 -12.51204 -12.24438 -11.77308 -11.47414 -11.44263 -11.18070 -11.05182 -10.89203 -10.66481 -10.56272 -10.40940 -10.29556 -9.85129 -9.70551 -8.61553 -8.23429 -8.22183 -6.66656 -3.99155 2.46289 3.15016 3.17479 3.18192 3.33799 3.79577 4.05729 4.29246 4.62633 4.86666 4.92964 4.98213 5.19679 5.20584 5.37187 5.43856 5.59828 5.64067 5.81697 5.83618 5.92487 6.01918 6.06047 6.14625 6.20935 6.34235 6.41790 6.93466 7.31114 7.70774 7.90403 8.34369 8.66134 8.96889 9.32291 9.85566 10.48141 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.044777 B = 0.005282 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.173175 B = 5300.040526 C = 5446.499142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.066 4.066 3 C -0.143 4.143 4 C 0.113 3.887 5 N -0.686 5.686 6 C 0.517 3.483 7 O -0.537 6.537 8 C 0.393 3.607 9 O -0.599 6.599 10 N -0.499 5.499 11 C -0.307 4.307 12 H 0.112 0.888 13 C 0.031 3.969 14 N -0.869 5.869 15 Si 0.940 3.060 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.269 1.269 19 C -0.178 4.178 20 C -0.173 4.173 21 H 0.053 0.947 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.084 0.916 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.410 0.590 29 H 0.405 0.595 30 H 0.281 0.719 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.853 10.784 -5.598 13.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 C -0.201 4.201 4 C 0.025 3.975 5 N -0.339 5.339 6 C 0.301 3.699 7 O -0.413 6.413 8 C 0.178 3.822 9 O -0.487 6.487 10 N -0.133 5.133 11 C -0.437 4.437 12 H 0.129 0.871 13 C -0.176 4.176 14 N -0.507 5.507 15 Si 0.765 3.235 16 H -0.194 1.194 17 H -0.206 1.206 18 H -0.194 1.194 19 C -0.216 4.216 20 C -0.211 4.211 21 H 0.073 0.927 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.103 0.897 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.247 0.753 29 H 0.240 0.760 30 H 0.091 0.909 31 H 0.124 0.876 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.637 10.802 -5.377 13.771 hybrid contribution 0.251 -0.830 0.172 0.884 sum -6.386 9.972 -5.205 12.935 Atomic orbital electron populations 1.21828 0.94874 1.02011 1.01355 1.20764 0.95310 0.95673 0.96816 1.21906 1.01711 0.95182 1.01303 1.20601 1.03725 0.81392 0.91749 1.45083 1.40838 1.05098 1.42916 1.20677 0.79661 0.90433 0.79103 1.90680 1.42148 1.60101 1.48396 1.18990 0.87818 0.87204 0.88215 1.90577 1.46768 1.58206 1.53177 1.41550 1.29315 1.08630 1.33783 1.19830 1.18510 0.82471 1.22920 0.87056 1.25583 0.95170 1.01307 0.95490 1.69479 1.19790 1.36334 1.25118 0.85777 0.78344 0.80828 0.78528 1.19385 1.20583 1.19378 1.23510 0.92933 1.02196 1.03009 1.23287 0.98266 1.03220 0.96324 0.92747 0.92696 0.92459 0.89725 0.92579 0.91845 0.92788 0.75350 0.75992 0.90867 0.87648 0.88734 0.88441 0.87938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 8.92 37.16 0.33 -1.31 16 2 C -0.07 -0.90 2.95 -90.62 -0.27 -1.17 16 3 C -0.14 -1.63 7.77 37.16 0.29 -1.34 16 4 C 0.11 1.63 1.77 -131.82 -0.23 1.40 16 5 N -0.69 -12.10 5.45 -48.23 -0.26 -12.37 16 6 C 0.52 11.34 7.52 -11.87 -0.09 11.25 16 7 O -0.54 -12.56 15.59 5.42 0.08 -12.48 16 8 C 0.39 10.02 7.82 -11.87 -0.09 9.92 16 9 O -0.60 -16.20 16.04 5.37 0.09 -16.11 16 10 N -0.50 -13.44 5.25 -11.59 -0.06 -13.50 16 11 C -0.31 -8.51 9.67 -15.15 -0.15 -8.65 16 12 H 0.11 3.14 7.15 -52.48 -0.38 2.77 16 13 C 0.03 0.82 5.51 -17.40 -0.10 0.72 16 14 N -0.87 -23.39 13.03 55.53 0.72 -22.66 16 15 Si 0.94 20.15 29.56 -169.99 -5.02 15.13 16 16 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 17 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 18 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 19 C -0.18 -2.32 9.45 -26.73 -0.25 -2.57 16 20 C -0.17 -1.91 9.35 -26.73 -0.25 -2.16 16 21 H 0.05 0.52 7.26 -51.93 -0.38 0.15 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.08 1.44 7.05 -51.93 -0.37 1.07 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.78 7.14 -51.93 -0.37 0.41 16 27 H 0.05 0.51 7.14 -51.93 -0.37 0.14 16 28 H 0.41 6.87 8.30 -40.82 -0.34 6.53 16 29 H 0.40 10.98 7.35 -40.82 -0.30 10.68 16 30 H 0.28 7.02 8.30 -40.82 -0.34 6.68 16 31 H 0.11 1.22 5.83 -51.93 -0.30 0.92 16 32 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 33 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.10 0.93 7.13 -51.93 -0.37 0.56 16 LS Contribution 290.32 15.07 4.38 4.38 Total: -1.00 -30.25 290.32 -5.31 -35.56 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -4.42 Total: 15.97 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -0.81 Total: 6.09 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: 0.40 Total: -48.53 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: 0.17 Total: -28.59 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.25 -5.31 -35.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379717613.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.626 kcal (2) G-P(sol) polarization free energy of solvation -30.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds