Wall clock time and date at job start Mon Mar 30 2020 04:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.87492 * 2 1 4 4 C 1.54335 * 109.87856 * 238.82548 * 2 1 3 5 5 H 1.08996 * 110.71673 * 336.93626 * 4 2 1 6 6 C 1.52997 * 110.71564 * 100.02633 * 4 2 1 7 7 C 1.55149 * 102.94154 * 218.38853 * 4 2 1 8 8 C 1.54692 * 101.68007 * 35.33750 * 7 4 2 9 9 N 1.47023 * 109.88630 * 121.02221 * 2 1 3 10 10 C 1.34779 * 125.64347 * 298.31841 * 9 2 1 11 11 O 1.21434 * 120.00248 * 359.97438 * 10 9 2 12 12 C 1.48830 * 119.99732 * 179.97438 * 10 9 2 13 13 O 1.21507 * 120.00192 * 359.97438 * 12 10 9 14 14 N 1.34779 * 120.00140 * 179.97438 * 12 10 9 15 15 C 1.36114 * 120.00161 * 179.97438 * 14 12 10 16 16 H 1.08003 * 120.00161 * 0.02562 * 15 14 12 17 17 C 1.39587 * 120.00133 * 179.97438 * 15 14 12 18 18 N 1.31014 * 120.00294 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99706 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 269.99592 * 19 17 15 21 21 H 1.48503 * 109.47261 * 149.99773 * 19 17 15 22 22 H 1.48500 * 109.47454 * 29.99766 * 19 17 15 23 23 H 1.09000 * 109.46665 * 300.43234 * 1 2 3 24 24 H 1.08996 * 109.47349 * 60.42795 * 1 2 3 25 25 H 1.08998 * 109.47245 * 180.43661 * 1 2 3 26 26 H 1.09001 * 109.47584 * 60.00150 * 6 4 2 27 27 H 1.08999 * 109.47009 * 179.97438 * 6 4 2 28 28 H 1.09005 * 109.47682 * 300.00025 * 6 4 2 29 29 H 1.09000 * 111.00362 * 153.57885 * 7 4 2 30 30 H 1.09001 * 111.00869 * 277.39131 * 7 4 2 31 31 H 1.08997 * 110.39622 * 204.36063 * 8 7 4 32 32 H 1.09007 * 110.23794 * 82.10836 * 8 7 4 33 33 H 0.97001 * 119.99591 * 0.02562 * 14 12 10 34 34 H 0.96998 * 120.00220 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0548 -0.7513 -1.2418 5 1 1.3038 -1.4458 -1.6182 6 6 2.4731 0.2348 -2.3342 7 6 3.2875 -1.5152 -0.6905 8 6 2.8191 -1.8754 0.7391 9 7 2.0301 -0.7125 1.1848 10 6 1.8087 -0.3580 2.4661 11 8 1.1452 0.6276 2.7175 12 6 2.3773 -1.1744 3.5730 13 8 3.0408 -2.1608 3.3216 14 7 2.1564 -0.8196 4.8543 15 6 2.6760 -1.5665 5.8667 16 1 3.2657 -2.4433 5.6432 17 6 2.4476 -1.1987 7.1937 18 7 2.9481 -1.9174 8.1681 19 14 1.4282 0.3181 7.5803 20 1 2.3180 1.5041 7.6652 21 1 0.7310 0.1286 8.8777 22 1 0.4253 0.5277 6.5054 23 1 -0.3633 0.5205 0.8861 24 1 -0.3634 0.5071 -0.8937 25 1 -0.3633 -1.0276 0.0078 26 1 3.2630 0.8834 -1.9553 27 1 2.8402 -0.3164 -3.2000 28 1 1.6146 0.8400 -2.6257 29 1 3.4850 -2.4128 -1.2765 30 1 4.1655 -0.8700 -0.6600 31 1 3.6777 -2.0247 1.3938 32 1 2.1970 -2.7703 0.7179 33 1 1.6264 -0.0323 5.0551 34 1 2.7897 -1.6616 9.0903 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380693299.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:21 Heat of formation + Delta-G solvation = -92.571489 kcal Electronic energy + Delta-G solvation = -17590.535052 eV Core-core repulsion = 14715.466499 eV Total energy + Delta-G solvation = -2875.068554 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.72142 -39.88647 -38.59340 -36.38149 -34.16418 -33.68438 -32.33354 -29.40061 -27.88067 -25.54155 -24.62974 -22.89458 -21.39055 -21.02938 -19.94119 -18.27286 -17.87867 -17.29358 -16.82983 -16.26111 -15.63721 -15.06080 -14.89436 -14.84542 -14.54551 -14.45394 -14.29893 -13.86180 -13.44218 -13.13633 -13.07172 -12.63172 -12.58390 -12.55631 -12.44224 -12.03997 -11.74064 -11.71449 -11.50106 -11.44171 -10.48972 -10.17119 -9.78633 -8.63893 -6.17385 0.50383 1.26581 1.30513 1.36407 1.59684 2.08284 2.25520 2.87371 3.04748 3.51298 3.63092 3.77734 3.89220 4.23685 4.30464 4.40788 4.58003 4.63509 4.69680 4.91276 4.94895 5.01237 5.11082 5.15420 5.19254 5.25486 5.35482 5.39977 5.49530 5.72816 6.15958 6.29207 6.55035 6.83665 7.13640 7.60978 8.50698 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.044127 B = 0.006157 C = 0.005582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.378979 B = 4546.687768 C = 5015.055793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.124 3.876 3 H 0.073 0.927 4 C -0.089 4.089 5 H 0.102 0.898 6 C -0.136 4.136 7 C -0.121 4.121 8 C 0.093 3.907 9 N -0.589 5.589 10 C 0.528 3.472 11 O -0.564 6.564 12 C 0.408 3.592 13 O -0.592 6.592 14 N -0.534 5.534 15 C -0.338 4.338 16 H 0.079 0.921 17 C 0.013 3.987 18 N -0.892 5.892 19 Si 0.946 3.054 20 H -0.252 1.252 21 H -0.255 1.255 22 H -0.251 1.251 23 H 0.040 0.960 24 H 0.096 0.904 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.111 0.889 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.391 0.609 34 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.516 5.164 -19.043 20.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.023 3.977 3 H 0.091 0.909 4 C -0.108 4.108 5 H 0.120 0.880 6 C -0.194 4.194 7 C -0.159 4.159 8 C -0.028 4.028 9 N -0.321 5.321 10 C 0.313 3.687 11 O -0.444 6.444 12 C 0.193 3.807 13 O -0.478 6.478 14 N -0.173 5.173 15 C -0.467 4.467 16 H 0.097 0.903 17 C -0.192 4.192 18 N -0.529 5.529 19 Si 0.766 3.234 20 H -0.176 1.176 21 H -0.179 1.179 22 H -0.176 1.176 23 H 0.059 0.941 24 H 0.114 0.886 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.130 0.870 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.227 0.773 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.407 5.005 -18.777 19.729 hybrid contribution -0.411 0.517 1.121 1.301 sum -3.818 5.522 -17.656 18.889 Atomic orbital electron populations 1.22104 0.94199 1.02328 1.02917 1.22083 0.95235 0.96441 0.83984 0.90897 1.22323 0.97671 0.97802 0.93012 0.88005 1.21744 1.01773 0.98397 0.97451 1.22921 0.97837 1.02142 0.92952 1.22645 0.95799 0.87444 0.96961 1.48403 1.50790 1.29143 1.03814 1.19673 0.80814 0.84578 0.83634 1.90645 1.41306 1.28290 1.84124 1.19580 0.88488 0.88713 0.83924 1.90555 1.44514 1.29641 1.83115 1.41701 1.44928 1.25637 1.05019 1.19162 1.32127 1.09968 0.85456 0.90294 1.26031 0.97747 1.01313 0.94135 1.69539 1.42678 1.39763 1.00942 0.85623 0.79491 0.78376 0.79932 1.17593 1.17868 1.17575 0.94092 0.88579 0.92476 0.92853 0.90214 0.91406 0.87040 0.90396 0.90599 0.91442 0.77280 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 9.10 71.98 0.66 -3.17 16 2 C 0.12 3.19 3.05 45.34 0.14 3.33 16 3 H 0.07 1.93 7.83 -2.39 -0.02 1.91 16 4 C -0.09 -1.53 3.08 -9.60 -0.03 -1.56 16 5 H 0.10 1.48 7.85 -2.39 -0.02 1.47 16 6 C -0.14 -1.68 9.14 71.98 0.66 -1.02 16 7 C -0.12 -2.34 6.52 31.91 0.21 -2.13 16 8 C 0.09 2.85 6.04 86.78 0.52 3.37 16 9 N -0.59 -20.40 3.07 -790.72 -2.42 -22.82 16 10 C 0.53 23.02 7.69 87.08 0.67 23.69 16 11 O -0.56 -25.55 15.51 -3.51 -0.05 -25.60 16 12 C 0.41 20.78 7.78 87.08 0.68 21.46 16 13 O -0.59 -32.27 13.33 -3.74 -0.05 -32.32 16 14 N -0.53 -28.22 5.06 -308.87 -1.56 -29.78 16 15 C -0.34 -19.89 10.16 84.35 0.86 -19.03 16 16 H 0.08 5.29 7.37 -2.91 -0.02 5.27 16 17 C 0.01 0.70 5.51 85.14 0.47 1.17 16 18 N -0.89 -51.26 13.94 21.77 0.30 -50.96 16 19 Si 0.95 40.28 27.74 68.60 1.90 42.18 16 20 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 21 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 22 H -0.25 -10.30 6.53 99.48 0.65 -9.65 16 23 H 0.04 1.24 6.88 -2.39 -0.02 1.23 16 24 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.05 0.73 8.10 -2.39 -0.02 0.71 16 27 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.08 1.50 8.02 -2.39 -0.02 1.48 16 31 H 0.08 2.80 6.17 -2.39 -0.01 2.79 16 32 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.39 19.11 5.22 -92.71 -0.48 18.62 16 34 H 0.29 15.04 8.30 -92.71 -0.77 14.27 16 Total: -1.00 -69.63 282.04 3.51 -66.12 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.57 Total: 27.09 kcal Atomic # 6 Polarization: 21.27 SS G_CDS: 4.83 Total: 26.10 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -3.68 Total: -103.56 kcal Atomic # 8 Polarization: -57.82 SS G_CDS: -0.10 Total: -57.93 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 1.90 Total: 42.18 kcal Total: -69.63 3.51 -66.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380693299.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.451 kcal (2) G-P(sol) polarization free energy of solvation -69.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds