Wall clock time and date at job start Mon Mar 30 2020 04:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 110.78356 * 2 1 4 4 C 1.55165 * 110.71789 * 123.23843 * 2 1 3 5 5 C 1.54915 * 101.57980 * 153.86302 * 4 2 1 6 6 N 1.47425 * 104.83334 * 322.99105 * 5 4 2 7 7 C 1.34777 * 125.65136 * 204.16738 * 6 5 4 8 8 O 1.21436 * 120.00354 * 179.97438 * 7 6 5 9 9 C 1.48831 * 119.99698 * 359.95153 * 7 6 5 10 10 O 1.21504 * 120.00001 * 0.02562 * 9 7 6 11 11 N 1.34770 * 120.00206 * 179.97438 * 9 7 6 12 12 C 1.36118 * 120.00588 * 179.97438 * 11 9 7 13 13 H 1.08003 * 119.99610 * 0.02562 * 12 11 9 14 14 C 1.39586 * 120.00245 * 180.02562 * 12 11 9 15 15 N 1.31013 * 120.00226 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99707 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47254 * 90.00200 * 16 14 12 18 18 H 1.48504 * 109.46820 * 209.99680 * 16 14 12 19 19 H 1.48504 * 109.47243 * 329.99645 * 16 14 12 20 20 C 1.47022 * 108.70334 * 24.12789 * 6 5 4 21 21 H 1.09000 * 110.01436 * 118.43179 * 20 6 5 22 22 C 1.53005 * 109.88592 * 239.52415 * 20 6 5 23 23 H 1.08992 * 109.47567 * 183.24024 * 1 2 3 24 24 H 1.09001 * 109.47087 * 303.23982 * 1 2 3 25 25 H 1.09000 * 109.46936 * 63.23532 * 1 2 3 26 26 H 1.08995 * 111.00547 * 271.93634 * 4 2 1 27 27 H 1.09001 * 111.00003 * 35.79214 * 4 2 1 28 28 H 1.08997 * 110.36462 * 204.15099 * 5 4 2 29 29 H 1.08999 * 110.46102 * 81.87572 * 5 4 2 30 30 H 0.97001 * 119.99703 * 0.02562 * 11 9 7 31 31 H 0.96997 * 120.00342 * 179.97438 * 15 14 12 32 32 H 1.08993 * 109.47167 * 177.80428 * 22 20 6 33 33 H 1.09000 * 109.46800 * 297.80932 * 22 20 6 34 34 H 1.09003 * 109.46659 * 57.80603 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0789 -0.7955 1.2139 5 6 3.4632 -1.2499 0.6876 6 7 3.2445 -1.5508 -0.7390 7 6 3.9913 -2.3848 -1.4894 8 8 3.7175 -2.5584 -2.6597 9 6 5.1521 -3.0927 -0.8839 10 8 5.4260 -2.9191 0.2871 11 7 5.8987 -3.9270 -1.6340 12 6 6.9606 -4.5741 -1.0804 13 1 7.2046 -4.4192 -0.0398 14 6 7.7341 -5.4378 -1.8576 15 7 7.4378 -5.6262 -3.1198 16 14 9.1910 -6.3263 -1.0975 17 1 8.7420 -7.6282 -0.5421 18 1 10.2245 -6.5619 -2.1375 19 1 9.7647 -5.4950 -0.0089 20 6 2.0760 -0.7913 -1.2072 21 1 2.3715 -0.1026 -1.9988 22 6 1.0048 -1.7522 -1.7270 23 1 -0.3634 -1.0259 0.0581 24 1 -0.3633 0.5633 0.8595 25 1 -0.3633 0.4628 -0.9176 26 1 2.1849 -0.1519 2.0871 27 1 1.4450 -1.6536 1.4375 28 1 3.7959 -2.1427 1.2170 29 1 4.1946 -0.4493 0.7985 30 1 5.6797 -4.0659 -2.5687 31 1 7.9756 -6.2261 -3.6600 32 1 0.1269 -1.1849 -2.0360 33 1 1.3973 -2.3072 -2.5791 34 1 0.7272 -2.4490 -0.9361 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380693301.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:29 Heat of formation + Delta-G solvation = -73.253573 kcal Electronic energy + Delta-G solvation = -17584.426949 eV Core-core repulsion = 14710.196083 eV Total energy + Delta-G solvation = -2874.230866 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.07371 -38.15017 -36.75690 -34.33926 -32.75711 -31.36905 -30.93937 -27.76163 -25.79429 -24.89283 -23.24863 -21.68087 -19.44295 -18.63972 -18.08179 -16.76539 -15.98997 -15.63616 -14.91767 -14.79018 -14.08920 -13.88465 -13.58574 -13.33199 -12.94547 -12.66588 -12.57008 -12.13751 -11.98476 -11.75357 -11.68476 -11.31932 -11.18695 -10.88056 -10.58826 -10.48836 -10.39334 -10.36739 -10.04504 -9.69886 -8.30562 -8.19907 -8.06189 -6.65249 -3.97774 2.48782 3.15160 3.15898 3.20786 3.32301 4.05804 4.28995 4.47432 4.72929 4.84716 5.00084 5.20385 5.31059 5.39902 5.45584 5.47508 5.69627 5.71145 5.78323 5.89752 6.00011 6.02211 6.11094 6.23001 6.36486 6.38456 6.50959 6.82002 7.32524 7.76211 7.90645 8.33105 8.63419 8.98117 9.34265 9.87210 10.49777 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.052324 B = 0.005594 C = 0.005168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.003635 B = 5004.503369 C = 5416.462397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 H 0.082 0.918 4 C -0.132 4.132 5 C 0.104 3.896 6 N -0.598 5.598 7 C 0.528 3.472 8 O -0.546 6.546 9 C 0.398 3.602 10 O -0.592 6.592 11 N -0.500 5.500 12 C -0.306 4.306 13 H 0.112 0.888 14 C 0.031 3.969 15 N -0.870 5.870 16 Si 0.939 3.061 17 H -0.274 1.274 18 H -0.280 1.280 19 H -0.265 1.265 20 C 0.137 3.863 21 H 0.070 0.930 22 C -0.163 4.163 23 H 0.062 0.938 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.106 0.894 29 H 0.064 0.936 30 H 0.404 0.596 31 H 0.280 0.720 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.473 8.336 5.038 14.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.100 0.900 4 C -0.171 4.171 5 C -0.018 4.018 6 N -0.333 5.333 7 C 0.315 3.685 8 O -0.423 6.423 9 C 0.182 3.818 10 O -0.480 6.480 11 N -0.134 5.134 12 C -0.436 4.436 13 H 0.130 0.870 14 C -0.176 4.176 15 N -0.508 5.508 16 Si 0.764 3.236 17 H -0.199 1.199 18 H -0.205 1.205 19 H -0.189 1.189 20 C 0.033 3.967 21 H 0.088 0.912 22 C -0.221 4.221 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.124 0.876 29 H 0.082 0.918 30 H 0.240 0.760 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.295 8.176 4.937 14.043 hybrid contribution 0.589 -0.458 -0.320 0.812 sum -9.707 7.718 4.617 13.233 Atomic orbital electron populations 1.21838 0.94131 1.02304 1.01516 1.22250 0.96129 0.99055 0.94687 0.89999 1.22963 0.96897 0.99950 0.97245 1.22522 0.95554 1.02788 0.80940 1.48244 1.29056 1.44133 1.11911 1.20430 0.83634 0.78978 0.85504 1.90668 1.71255 1.63934 1.16480 1.18897 0.87287 0.87825 0.87741 1.90518 1.72727 1.68656 1.16129 1.41547 1.23998 1.34801 1.13103 1.19865 1.04357 1.21321 0.98081 0.87003 1.25577 0.99584 0.97228 0.95195 1.69484 1.39604 1.35238 1.06477 0.85727 0.79589 0.79477 0.78782 1.19923 1.20541 1.18920 1.21544 0.86041 0.92943 0.96157 0.91153 1.22216 0.98023 0.99713 1.02133 0.91920 0.92614 0.92435 0.90214 0.90788 0.87640 0.91772 0.76034 0.90953 0.91809 0.91140 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 7.98 37.16 0.30 -0.95 16 2 C -0.10 -1.14 3.48 -88.78 -0.31 -1.45 16 3 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 4 C -0.13 -1.56 6.53 -24.57 -0.16 -1.72 16 5 C 0.10 1.70 6.06 -2.53 -0.02 1.68 16 6 N -0.60 -11.11 3.08 -163.74 -0.50 -11.61 16 7 C 0.53 12.04 7.67 -11.88 -0.09 11.95 16 8 O -0.55 -13.26 15.37 5.42 0.08 -13.17 16 9 C 0.40 10.21 7.78 -11.88 -0.09 10.12 16 10 O -0.59 -15.68 13.33 5.36 0.07 -15.60 16 11 N -0.50 -13.58 5.25 -11.59 -0.06 -13.64 16 12 C -0.31 -8.47 9.67 -15.15 -0.15 -8.62 16 13 H 0.11 3.15 7.15 -52.48 -0.38 2.77 16 14 C 0.03 0.81 5.51 -17.40 -0.10 0.71 16 15 N -0.87 -23.53 13.03 55.53 0.72 -22.81 16 16 Si 0.94 20.18 29.56 -169.99 -5.02 15.15 16 17 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 18 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 19 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 20 C 0.14 2.02 3.44 -66.95 -0.23 1.79 16 21 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 22 C -0.16 -2.30 7.92 37.16 0.29 -2.01 16 23 H 0.06 0.58 6.62 -51.93 -0.34 0.23 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.47 7.58 -51.93 -0.39 0.08 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.86 8.02 -51.93 -0.42 0.45 16 28 H 0.11 1.97 6.15 -51.93 -0.32 1.65 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.40 11.11 7.35 -40.82 -0.30 10.81 16 31 H 0.28 7.02 8.30 -40.82 -0.34 6.68 16 32 H 0.06 0.71 6.65 -51.93 -0.35 0.37 16 33 H 0.07 1.20 6.76 -51.93 -0.35 0.85 16 34 H 0.06 0.78 7.58 -51.93 -0.39 0.39 16 LS Contribution 279.84 15.07 4.22 4.22 Total: -1.00 -30.24 279.84 -5.53 -35.77 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -4.49 Total: 10.18 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: -0.55 Total: 11.51 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: 0.16 Total: -48.06 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: 0.15 Total: -28.78 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.24 -5.53 -35.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380693301.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.482 kcal (2) G-P(sol) polarization free energy of solvation -30.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds