Wall clock time and date at job start Mon Mar 30 2020 04:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 110.78356 * 2 1 4 4 C 1.55165 * 110.71789 * 123.23843 * 2 1 3 5 5 C 1.54915 * 101.57980 * 153.86302 * 4 2 1 6 6 N 1.47425 * 104.83334 * 322.99105 * 5 4 2 7 7 C 1.34777 * 125.65136 * 204.16738 * 6 5 4 8 8 O 1.21436 * 120.00354 * 179.97438 * 7 6 5 9 9 C 1.48831 * 119.99698 * 359.95153 * 7 6 5 10 10 O 1.21504 * 120.00001 * 0.02562 * 9 7 6 11 11 N 1.34770 * 120.00206 * 179.97438 * 9 7 6 12 12 C 1.36118 * 120.00588 * 179.97438 * 11 9 7 13 13 H 1.08003 * 119.99610 * 0.02562 * 12 11 9 14 14 C 1.39586 * 120.00245 * 180.02562 * 12 11 9 15 15 N 1.31013 * 120.00226 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99707 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47254 * 90.00200 * 16 14 12 18 18 H 1.48504 * 109.46820 * 209.99680 * 16 14 12 19 19 H 1.48504 * 109.47243 * 329.99645 * 16 14 12 20 20 C 1.47022 * 108.70334 * 24.12789 * 6 5 4 21 21 H 1.09000 * 110.01436 * 118.43179 * 20 6 5 22 22 C 1.53005 * 109.88592 * 239.52415 * 20 6 5 23 23 H 1.08992 * 109.47567 * 183.24024 * 1 2 3 24 24 H 1.09001 * 109.47087 * 303.23982 * 1 2 3 25 25 H 1.09000 * 109.46936 * 63.23532 * 1 2 3 26 26 H 1.08995 * 111.00547 * 271.93634 * 4 2 1 27 27 H 1.09001 * 111.00003 * 35.79214 * 4 2 1 28 28 H 1.08997 * 110.36462 * 204.15099 * 5 4 2 29 29 H 1.08999 * 110.46102 * 81.87572 * 5 4 2 30 30 H 0.97001 * 119.99703 * 0.02562 * 11 9 7 31 31 H 0.96997 * 120.00342 * 179.97438 * 15 14 12 32 32 H 1.08993 * 109.47167 * 177.80428 * 22 20 6 33 33 H 1.09000 * 109.46800 * 297.80932 * 22 20 6 34 34 H 1.09003 * 109.46659 * 57.80603 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0789 -0.7955 1.2139 5 6 3.4632 -1.2499 0.6876 6 7 3.2445 -1.5508 -0.7390 7 6 3.9913 -2.3848 -1.4894 8 8 3.7175 -2.5584 -2.6597 9 6 5.1521 -3.0927 -0.8839 10 8 5.4260 -2.9191 0.2871 11 7 5.8987 -3.9270 -1.6340 12 6 6.9606 -4.5741 -1.0804 13 1 7.2046 -4.4192 -0.0398 14 6 7.7341 -5.4378 -1.8576 15 7 7.4378 -5.6262 -3.1198 16 14 9.1910 -6.3263 -1.0975 17 1 8.7420 -7.6282 -0.5421 18 1 10.2245 -6.5619 -2.1375 19 1 9.7647 -5.4950 -0.0089 20 6 2.0760 -0.7913 -1.2072 21 1 2.3715 -0.1026 -1.9988 22 6 1.0048 -1.7522 -1.7270 23 1 -0.3634 -1.0259 0.0581 24 1 -0.3633 0.5633 0.8595 25 1 -0.3633 0.4628 -0.9176 26 1 2.1849 -0.1519 2.0871 27 1 1.4450 -1.6536 1.4375 28 1 3.7959 -2.1427 1.2170 29 1 4.1946 -0.4493 0.7985 30 1 5.6797 -4.0659 -2.5687 31 1 7.9756 -6.2261 -3.6600 32 1 0.1269 -1.1849 -2.0360 33 1 1.3973 -2.3072 -2.5791 34 1 0.7272 -2.4490 -0.9361 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380693301.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:29 Heat of formation + Delta-G solvation = -94.380434 kcal Electronic energy + Delta-G solvation = -17585.343078 eV Core-core repulsion = 14710.196083 eV Total energy + Delta-G solvation = -2875.146995 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.66118 -39.82898 -38.55174 -36.34105 -34.13391 -33.38831 -32.12000 -28.97972 -27.67728 -26.12953 -24.77551 -23.15243 -20.96821 -20.29753 -19.79370 -18.40140 -17.77843 -17.07446 -16.81729 -16.35360 -15.84726 -15.35966 -15.04056 -14.71939 -14.43352 -14.14436 -13.72294 -13.68920 -13.45676 -13.03405 -12.97784 -12.81229 -12.57833 -12.34997 -12.21532 -12.10149 -11.67511 -11.65304 -11.46378 -11.34129 -10.28528 -10.08380 -9.74194 -8.66263 -6.11399 0.59655 1.39670 1.46354 1.54375 1.71162 2.27059 2.35454 3.07697 3.14257 3.57707 3.65736 3.90839 3.99523 4.22042 4.32116 4.40725 4.58958 4.64609 4.83604 4.88606 4.92437 4.98902 5.11788 5.15350 5.23710 5.25800 5.35380 5.42624 5.56348 5.68394 6.22344 6.34035 6.75780 6.97088 7.27698 7.79367 8.49889 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.052324 B = 0.005594 C = 0.005168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.003635 B = 5004.503369 C = 5416.462397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 H 0.099 0.901 4 C -0.118 4.118 5 C 0.095 3.905 6 N -0.591 5.591 7 C 0.525 3.475 8 O -0.569 6.569 9 C 0.392 3.608 10 O -0.605 6.605 11 N -0.514 5.514 12 C -0.345 4.345 13 H 0.100 0.900 14 C -0.006 4.006 15 N -0.899 5.899 16 Si 1.012 2.988 17 H -0.264 1.264 18 H -0.267 1.267 19 H -0.263 1.263 20 C 0.123 3.877 21 H 0.068 0.932 22 C -0.156 4.156 23 H 0.059 0.941 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.112 0.888 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.399 0.601 31 H 0.289 0.711 32 H 0.098 0.902 33 H 0.034 0.966 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.564 9.409 6.188 16.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.108 4.108 3 H 0.117 0.883 4 C -0.156 4.156 5 C -0.027 4.027 6 N -0.324 5.324 7 C 0.310 3.690 8 O -0.449 6.449 9 C 0.177 3.823 10 O -0.494 6.494 11 N -0.147 5.147 12 C -0.474 4.474 13 H 0.117 0.883 14 C -0.210 4.210 15 N -0.536 5.536 16 Si 0.832 3.168 17 H -0.189 1.189 18 H -0.191 1.191 19 H -0.187 1.187 20 C 0.021 3.979 21 H 0.086 0.914 22 C -0.214 4.214 23 H 0.078 0.922 24 H 0.096 0.904 25 H 0.086 0.914 26 H 0.130 0.870 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.233 0.767 31 H 0.099 0.901 32 H 0.117 0.883 33 H 0.053 0.947 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.424 9.281 6.111 15.937 hybrid contribution 0.852 -0.709 -0.653 1.286 sum -10.572 8.572 5.459 14.665 Atomic orbital electron populations 1.21834 0.91797 1.02704 1.03132 1.22281 0.97833 0.98902 0.91784 0.88266 1.22948 0.93493 1.00712 0.98462 1.22679 0.98910 1.01667 0.79475 1.48391 1.28957 1.42355 1.12704 1.19891 0.83601 0.80015 0.85487 1.90650 1.71834 1.65188 1.17223 1.19539 0.87776 0.87333 0.87641 1.90495 1.73335 1.68929 1.16637 1.41653 1.24561 1.35623 1.12909 1.19978 1.05896 1.23463 0.98076 0.88265 1.26562 1.01880 0.97050 0.95464 1.69558 1.40790 1.35647 1.07639 0.84676 0.75847 0.78144 0.78114 1.18921 1.19134 1.18714 1.21979 0.84765 0.93007 0.98174 0.91432 1.22171 0.98853 0.99667 1.00709 0.92218 0.90448 0.91382 0.87005 0.90449 0.90534 0.91520 0.76676 0.90135 0.88302 0.94653 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 7.98 71.98 0.57 -1.26 16 2 C -0.09 -1.67 3.48 -9.60 -0.03 -1.70 16 3 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 4 C -0.12 -2.42 6.53 31.99 0.21 -2.21 16 5 C 0.09 3.01 6.06 86.86 0.53 3.54 16 6 N -0.59 -21.95 3.08 -790.29 -2.43 -24.39 16 7 C 0.52 24.74 7.67 87.08 0.67 25.41 16 8 O -0.57 -28.67 15.37 -3.52 -0.05 -28.73 16 9 C 0.39 20.97 7.78 87.08 0.68 21.65 16 10 O -0.60 -33.22 13.33 -3.73 -0.05 -33.27 16 11 N -0.51 -29.17 5.25 -308.88 -1.62 -30.79 16 12 C -0.34 -19.77 9.67 84.35 0.82 -18.95 16 13 H 0.10 5.81 7.15 -2.91 -0.02 5.79 16 14 C -0.01 -0.30 5.51 85.14 0.47 0.17 16 15 N -0.90 -49.34 13.03 21.77 0.28 -49.06 16 16 Si 1.01 41.33 29.56 68.60 2.03 43.36 16 17 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 18 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 19 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 20 C 0.12 3.45 3.44 45.34 0.16 3.60 16 21 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 22 C -0.16 -4.20 7.92 71.98 0.57 -3.63 16 23 H 0.06 0.86 6.62 -2.39 -0.02 0.84 16 24 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.07 0.80 7.58 -2.39 -0.02 0.78 16 26 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.08 1.57 8.02 -2.39 -0.02 1.55 16 28 H 0.08 2.91 6.15 -2.39 -0.01 2.89 16 29 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.40 23.05 7.35 -92.71 -0.68 22.37 16 31 H 0.29 14.48 8.30 -92.71 -0.77 13.71 16 32 H 0.10 1.94 6.65 -2.39 -0.02 1.92 16 33 H 0.03 1.20 6.76 -2.39 -0.02 1.18 16 34 H 0.06 1.51 7.58 -2.39 -0.02 1.49 16 Total: -1.00 -68.09 279.84 3.22 -64.87 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: 0.43 Total: 31.39 kcal Atomic # 6 Polarization: 21.98 SS G_CDS: 4.63 Total: 26.62 kcal Atomic # 7 Polarization: -100.46 SS G_CDS: -3.77 Total: -104.23 kcal Atomic # 8 Polarization: -61.90 SS G_CDS: -0.10 Total: -62.00 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -68.09 3.22 -64.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380693301.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.511 kcal (2) G-P(sol) polarization free energy of solvation -68.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds