Wall clock time and date at job start Mon Mar 30 2020 04:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47188 * 2 1 4 4 C 1.38695 * 125.99145 * 269.69341 * 3 2 1 5 5 C 1.32860 * 107.92016 * 179.82311 * 4 3 2 6 6 N 1.38696 * 107.91320 * 0.43365 * 5 4 3 7 7 C 1.46500 * 125.98342 * 179.75775 * 6 5 4 8 8 C 1.53001 * 109.47367 * 269.95984 * 7 6 5 9 9 O 1.42891 * 109.47000 * 65.00063 * 8 7 6 10 10 C 1.42900 * 114.00230 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47471 * 179.97438 * 10 9 8 12 12 H 1.07992 * 120.00134 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99765 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99559 * 179.97438 * 13 11 10 15 15 Si 1.86792 * 120.00205 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47219 * 89.99675 * 15 13 11 17 17 H 1.48502 * 109.47452 * 209.99786 * 15 13 11 18 18 H 1.48500 * 109.47327 * 329.99657 * 15 13 11 19 19 C 1.34752 * 108.03077 * 359.72276 * 6 5 4 20 20 O 1.21804 * 125.94789 * 180.02562 * 19 6 5 21 21 H 1.09002 * 109.47153 * 299.99573 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99745 * 1 2 3 24 24 H 1.08996 * 109.47853 * 120.00399 * 2 1 3 25 25 H 1.09002 * 109.47153 * 240.00427 * 2 1 3 26 26 H 1.08004 * 126.03796 * 359.97438 * 4 3 2 27 27 H 1.07998 * 126.04336 * 180.16133 * 5 4 3 28 28 H 1.09003 * 109.46767 * 29.96382 * 7 6 5 29 29 H 1.09001 * 109.47308 * 149.95738 * 7 6 5 30 30 H 1.09004 * 109.47004 * 185.00359 * 8 7 6 31 31 H 1.09001 * 109.46979 * 305.00084 * 8 7 6 32 32 H 1.09003 * 109.46890 * 300.00368 * 10 9 8 33 33 H 1.09001 * 109.46840 * 60.00012 * 10 9 8 34 34 H 0.97001 * 119.99907 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2957 2.1476 -1.1222 5 6 2.7109 3.3405 -0.7101 6 7 2.7097 3.3369 0.6769 7 6 3.1035 4.4525 1.5409 8 6 4.6006 4.3604 1.8425 9 8 5.3418 4.5385 0.6338 10 6 6.7588 4.4706 0.8055 11 6 7.4363 4.6700 -0.5257 12 1 6.8441 4.8328 -1.4140 13 6 8.8124 4.6457 -0.6094 14 7 9.4036 4.8193 -1.7712 15 14 9.8367 4.3650 0.9272 16 1 10.0700 2.9096 1.1075 17 1 11.1407 5.0616 0.7870 18 1 9.1140 4.9006 2.1087 19 6 2.2823 2.1277 1.0905 20 8 2.1559 1.7716 2.2484 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 2.1901 1.8315 -2.1495 27 1 3.0025 4.1654 -1.3431 28 1 2.8918 5.3952 1.0361 29 1 2.5414 4.4057 2.4736 30 1 4.8761 5.1375 2.5555 31 1 4.8263 3.3818 2.2662 32 1 7.0787 5.2502 1.4969 33 1 7.0296 3.4945 1.2080 34 1 10.3717 4.8026 -1.8301 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385270116.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:28 Heat of formation + Delta-G solvation = -51.988116 kcal Electronic energy + Delta-G solvation = -17179.605681 eV Core-core repulsion = 14306.296954 eV Total energy + Delta-G solvation = -2873.308727 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.15325 -38.87607 -37.81013 -36.69659 -34.89906 -33.29995 -30.75901 -29.66474 -28.95473 -25.23350 -24.07867 -23.64906 -22.54321 -21.15791 -19.11495 -18.49932 -17.61900 -17.39180 -16.74317 -16.56785 -16.13511 -16.03778 -15.29662 -14.96717 -14.77691 -14.65593 -14.25937 -13.91525 -13.54980 -13.33401 -12.99978 -12.93483 -12.76786 -12.61530 -12.26196 -12.11348 -11.85611 -11.40277 -11.37498 -10.95249 -10.72530 -10.44182 -8.61964 -8.38376 -6.45202 1.32053 1.32959 1.35012 1.43761 1.50309 1.85704 2.27103 2.64319 2.94319 2.97124 3.80947 4.02371 4.05985 4.21657 4.29140 4.34101 4.38939 4.50089 4.51315 4.61360 4.68145 4.73024 4.88531 4.90470 4.95478 5.21766 5.26355 5.41243 5.56141 5.89795 6.04574 6.52319 6.56887 6.66954 7.18614 7.31368 8.78047 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.033608 B = 0.005382 C = 0.005166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.926348 B = 5201.645500 C = 5419.081150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.119 3.881 3 N -0.534 5.534 4 C -0.018 4.018 5 C -0.007 4.007 6 N -0.529 5.529 7 C 0.138 3.862 8 C 0.036 3.964 9 O -0.391 6.391 10 C 0.180 3.820 11 C -0.539 4.539 12 H 0.040 0.960 13 C 0.019 3.981 14 N -0.938 5.938 15 Si 0.946 3.054 16 H -0.266 1.266 17 H -0.271 1.271 18 H -0.248 1.248 19 C 0.622 3.378 20 O -0.627 6.627 21 H 0.035 0.965 22 H 0.096 0.904 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.119 0.881 26 H 0.218 0.782 27 H 0.191 0.809 28 H 0.120 0.880 29 H 0.113 0.887 30 H 0.080 0.920 31 H 0.027 0.973 32 H 0.015 0.985 33 H -0.003 1.003 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.446 -5.906 2.921 17.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.001 4.001 3 N -0.253 5.253 4 C -0.139 4.139 5 C -0.129 4.129 6 N -0.247 5.247 7 C 0.017 3.983 8 C -0.042 4.042 9 O -0.310 6.310 10 C 0.104 3.896 11 C -0.576 4.576 12 H 0.058 0.942 13 C -0.180 4.180 14 N -0.577 5.577 15 Si 0.768 3.232 16 H -0.191 1.191 17 H -0.195 1.195 18 H -0.172 1.172 19 C 0.325 3.675 20 O -0.511 6.511 21 H 0.054 0.946 22 H 0.114 0.886 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.137 0.863 26 H 0.234 0.766 27 H 0.208 0.792 28 H 0.138 0.862 29 H 0.131 0.869 30 H 0.098 0.902 31 H 0.045 0.955 32 H 0.032 0.968 33 H 0.014 0.986 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.465 -6.121 3.475 17.906 hybrid contribution 0.996 -0.065 0.597 1.163 sum -15.468 -6.186 4.072 17.150 Atomic orbital electron populations 1.22091 0.93653 1.03901 1.01994 1.21778 0.95907 0.77718 1.04716 1.45601 1.59349 1.14518 1.05830 1.22344 1.07718 0.90093 0.93769 1.22243 1.06890 1.01193 0.82596 1.45422 1.58561 1.12949 1.07817 1.21753 0.92341 0.88394 0.95804 1.23003 0.92646 1.00054 0.88515 1.87843 1.18673 1.93343 1.31181 1.20308 0.78566 0.94470 0.96234 1.21080 0.92085 1.50486 0.93995 0.94164 1.25698 0.98577 0.93858 0.99852 1.70002 1.10763 1.50534 1.26395 0.85741 0.78470 0.79343 0.79629 1.19090 1.19546 1.17201 1.16596 0.83544 0.82230 0.85147 1.90930 1.65701 1.76537 1.17966 0.94598 0.88576 0.91057 0.90995 0.86295 0.76568 0.79155 0.86164 0.86934 0.90158 0.95459 0.96751 0.98564 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 10.24 71.98 0.74 -1.80 16 2 C 0.12 2.37 6.76 86.38 0.58 2.95 16 3 N -0.53 -14.56 2.78 -656.20 -1.82 -16.38 16 4 C -0.02 -0.41 11.49 82.43 0.95 0.54 16 5 C -0.01 -0.18 11.34 82.43 0.93 0.75 16 6 N -0.53 -16.87 2.73 -656.19 -1.79 -18.66 16 7 C 0.14 3.94 6.42 86.38 0.55 4.49 16 8 C 0.04 1.24 6.28 71.98 0.45 1.69 16 9 O -0.39 -17.50 10.12 -148.98 -1.51 -19.00 16 10 C 0.18 9.01 4.76 71.23 0.34 9.35 16 11 C -0.54 -32.04 9.99 25.60 0.26 -31.79 16 12 H 0.04 2.65 8.06 -2.91 -0.02 2.62 16 13 C 0.02 1.09 5.47 84.66 0.46 1.55 16 14 N -0.94 -57.91 13.96 21.45 0.30 -57.61 16 15 Si 0.95 43.46 27.47 68.60 1.88 45.34 16 16 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.25 -10.62 6.54 99.48 0.65 -9.96 16 19 C 0.62 21.93 8.52 179.07 1.53 23.45 16 20 O -0.63 -26.28 17.64 -4.68 -0.08 -26.37 16 21 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 22 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 24 H 0.07 1.65 8.07 -2.39 -0.02 1.63 16 25 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.22 3.05 8.06 -2.91 -0.02 3.03 16 27 H 0.19 4.69 8.06 -2.91 -0.02 4.66 16 28 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 29 H 0.11 2.86 8.07 -2.39 -0.02 2.84 16 30 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 31 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.01 0.70 7.20 -2.39 -0.02 0.69 16 33 H 0.00 -0.17 7.57 -2.39 -0.02 -0.18 16 34 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -77.99 297.11 4.79 -73.20 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 1.01 Total: 8.27 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 6.79 Total: 11.20 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -3.31 Total: -92.66 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -1.59 Total: -45.37 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.88 Total: 45.34 kcal Total: -77.99 4.79 -73.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385270116.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.217 kcal (2) G-P(sol) polarization free energy of solvation -77.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds