Wall clock time and date at job start Mon Mar 30 2020 03:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35449 * 126.77666 * 2 1 4 4 C 1.41384 * 103.98247 * 180.09787 * 3 2 1 5 5 C 1.50704 * 126.80045 * 179.89060 * 4 3 2 6 6 N 1.46895 * 109.47030 * 94.70653 * 5 4 3 7 7 C 1.46906 * 110.99789 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47053 * 179.97438 * 7 6 5 9 9 O 1.42905 * 109.46911 * 65.00374 * 8 7 6 10 10 C 1.42901 * 113.99735 * 179.97438 * 9 8 7 11 11 C 1.50695 * 109.46841 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00154 * 359.97438 * 11 10 9 13 13 C 1.37883 * 120.00195 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99650 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00316 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47125 * 59.99437 * 15 13 11 17 17 H 1.48498 * 109.46926 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46824 * 299.99822 * 15 13 11 19 19 N 1.30172 * 106.39248 * 359.62177 * 4 3 2 20 20 O 1.20918 * 111.60863 * 0.24437 * 19 4 3 21 21 H 1.08993 * 109.47294 * 180.30384 * 1 2 3 22 22 H 1.09004 * 109.47103 * 300.30526 * 1 2 3 23 23 H 1.09002 * 109.46461 * 60.30214 * 1 2 3 24 24 H 1.07995 * 128.01069 * 359.95913 * 3 2 1 25 25 H 1.08996 * 109.46908 * 334.70471 * 5 4 3 26 26 H 1.09002 * 109.46622 * 214.70645 * 5 4 3 27 27 H 1.00902 * 111.00273 * 303.95312 * 6 5 4 28 28 H 1.08992 * 109.47459 * 299.99826 * 7 6 5 29 29 H 1.09004 * 109.47040 * 59.99976 * 7 6 5 30 30 H 1.09003 * 109.47073 * 184.99730 * 8 7 6 31 31 H 1.09002 * 109.47495 * 305.00162 * 8 7 6 32 32 H 1.08998 * 109.46730 * 299.99656 * 10 9 8 33 33 H 1.08996 * 109.47304 * 60.00237 * 10 9 8 34 34 H 0.96994 * 119.99473 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5372 -0.0023 5 6 4.9212 1.2999 -0.0056 6 7 5.4039 1.4507 1.3735 7 6 6.6725 2.1907 1.4093 8 6 7.1422 2.3279 2.8589 9 8 7.4440 1.0344 3.3862 10 6 7.8949 1.0503 4.7421 11 6 8.1818 -0.3588 5.1926 12 1 8.0341 -1.1840 4.5117 13 6 8.6318 -0.5948 6.4744 14 7 8.8111 0.4101 7.3037 15 14 8.9880 -2.3414 7.0326 16 1 10.0410 -2.9323 6.1682 17 1 9.4564 -2.3249 8.4417 18 1 7.7501 -3.1556 6.9314 19 7 3.4763 -0.7564 0.0048 20 8 2.3095 -1.0736 0.0062 21 1 -0.3633 -1.0276 0.0054 22 1 -0.3633 0.5186 0.8873 23 1 -0.3632 0.5092 -0.8927 24 1 2.0346 2.1270 -0.0006 25 1 4.7633 2.2848 -0.4451 26 1 5.6608 0.7546 -0.5920 27 1 4.7086 1.8962 1.9533 28 1 7.4241 1.6514 0.8330 29 1 6.5272 3.1818 0.9794 30 1 8.0352 2.9520 2.8940 31 1 6.3536 2.7881 3.4544 32 1 8.8036 1.6478 4.8158 33 1 7.1223 1.4841 5.3769 34 1 9.1280 0.2441 8.2053 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385351902.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:05 Heat of formation + Delta-G solvation = -17.007152 kcal Electronic energy + Delta-G solvation = -16346.363149 eV Core-core repulsion = 13474.571311 eV Total energy + Delta-G solvation = -2871.791838 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.90387 -38.91501 -37.35946 -35.12181 -34.68845 -34.05748 -30.84908 -28.99538 -28.57482 -26.40344 -24.49215 -23.92989 -22.91239 -21.06108 -18.66225 -18.64023 -18.12713 -17.61359 -16.89895 -16.73997 -16.16440 -15.50924 -15.27960 -15.11114 -14.57030 -14.46697 -13.93354 -13.69300 -13.61072 -13.32840 -13.13640 -12.91875 -12.80594 -12.56326 -12.31145 -11.97226 -11.83828 -11.29996 -11.16209 -10.87110 -10.22726 -10.20366 -9.36448 -8.33672 -6.45714 0.57843 1.23531 1.37527 1.42763 1.51244 2.30935 2.33963 2.99600 3.12845 3.20311 3.35702 3.61974 4.14331 4.15468 4.20293 4.33132 4.35318 4.54504 4.63095 4.63974 4.65809 4.76822 4.80650 4.94370 4.97077 5.03686 5.17655 5.29707 5.53487 5.94239 5.97874 6.35291 6.55789 6.85321 7.26607 7.39750 8.78533 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.025114 B = 0.004295 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.636622 B = 6518.350596 C = 7234.117159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.035 4.035 3 C -0.236 4.236 4 C 0.007 3.993 5 C 0.142 3.858 6 N -0.700 5.700 7 C 0.078 3.922 8 C 0.053 3.947 9 O -0.402 6.402 10 C 0.209 3.791 11 C -0.551 4.551 12 H 0.055 0.945 13 C 0.008 3.992 14 N -0.930 5.930 15 Si 0.982 3.018 16 H -0.266 1.266 17 H -0.270 1.270 18 H -0.269 1.269 19 N -0.394 5.394 20 O 0.083 5.917 21 H 0.089 0.911 22 H 0.105 0.895 23 H 0.113 0.887 24 H 0.200 0.800 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.345 0.655 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.041 0.959 32 H -0.013 1.013 33 H -0.016 1.016 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.589 5.613 -16.264 23.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.099 4.099 3 C -0.257 4.257 4 C -0.152 4.152 5 C 0.013 3.987 6 N -0.334 5.334 7 C -0.051 4.051 8 C -0.025 4.025 9 O -0.321 6.321 10 C 0.134 3.866 11 C -0.589 4.589 12 H 0.074 0.926 13 C -0.190 4.190 14 N -0.569 5.569 15 Si 0.804 3.196 16 H -0.190 1.190 17 H -0.195 1.195 18 H -0.193 1.193 19 N -0.100 5.100 20 O 0.017 5.983 21 H 0.107 0.893 22 H 0.124 0.876 23 H 0.131 0.869 24 H 0.218 0.782 25 H 0.104 0.896 26 H 0.095 0.905 27 H 0.164 0.836 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.005 0.995 33 H 0.001 0.999 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.379 3.851 -16.187 22.658 hybrid contribution -0.101 1.171 0.595 1.317 sum -15.481 5.021 -15.593 22.539 Atomic orbital electron populations 1.20574 0.80734 1.05759 1.05777 1.25405 0.98173 0.85398 1.00877 1.22767 0.89990 1.02473 1.10514 1.23815 0.98357 0.89907 1.03078 1.20193 0.89821 0.98216 0.90492 1.60143 1.06133 1.57202 1.09933 1.21922 0.91193 0.97527 0.94440 1.22643 0.98714 0.86006 0.95103 1.87927 1.86583 1.28600 1.29033 1.19787 0.91633 0.96691 0.78472 1.21367 1.45823 0.93207 0.98483 0.92639 1.25940 0.94388 1.02972 0.95744 1.70054 1.46336 1.33281 1.07211 0.85259 0.79017 0.77739 0.77541 1.19037 1.19459 1.19349 1.73896 0.97681 1.18163 1.20252 1.84806 1.11300 1.34647 1.67531 0.89250 0.87627 0.86891 0.78243 0.89609 0.90488 0.83619 0.90934 0.89982 0.92819 0.94065 0.99541 0.99852 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.45 71.24 0.74 0.16 16 2 C -0.04 -0.66 7.49 25.04 0.19 -0.48 16 3 C -0.24 -4.56 11.06 22.40 0.25 -4.31 16 4 C 0.01 0.19 6.84 43.58 0.30 0.49 16 5 C 0.14 3.51 6.27 85.56 0.54 4.05 16 6 N -0.70 -21.48 6.44 -517.93 -3.33 -24.81 16 7 C 0.08 2.24 6.07 86.30 0.52 2.77 16 8 C 0.05 1.98 6.22 71.98 0.45 2.43 16 9 O -0.40 -20.98 10.27 -148.98 -1.53 -22.51 16 10 C 0.21 12.39 5.69 71.23 0.41 12.79 16 11 C -0.55 -34.82 9.43 25.60 0.24 -34.57 16 12 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 13 C 0.01 0.48 5.46 84.66 0.46 0.95 16 14 N -0.93 -57.52 13.29 21.45 0.28 -57.24 16 15 Si 0.98 46.43 29.54 68.60 2.03 48.46 16 16 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 18 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 19 N -0.39 -12.97 12.07 -49.55 -0.60 -13.56 16 20 O 0.08 2.31 11.20 71.69 0.80 3.11 16 21 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 22 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16 23 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 24 H 0.20 2.33 8.06 -2.91 -0.02 2.31 16 25 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.35 9.86 8.72 -89.69 -0.78 9.08 16 28 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 32 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 33 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 34 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -78.64 301.56 2.05 -76.59 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: 0.31 Total: 5.69 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: 4.09 Total: -15.73 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -3.65 Total: -95.61 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.73 Total: -19.40 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -78.64 2.05 -76.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385351902.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.579 kcal (2) G-P(sol) polarization free energy of solvation -78.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds