Wall clock time and date at job start Mon Mar 30 2020 03:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47086 * 2 1 4 4 O 1.42898 * 109.47162 * 120.00356 * 2 1 3 5 5 C 1.42906 * 113.99821 * 90.00300 * 4 2 1 6 6 C 1.53006 * 109.46748 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.46866 * 179.97438 * 6 5 4 8 8 N 1.29945 * 126.28943 * 90.02241 * 7 6 5 9 9 O 1.21301 * 110.25300 * 179.97438 * 8 7 6 10 10 C 1.33641 * 109.81235 * 0.02562 * 9 8 7 11 11 C 1.50699 * 126.55289 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47233 * 269.97806 * 11 10 9 13 13 H 1.07997 * 120.00183 * 359.97438 * 12 11 10 14 14 C 1.37883 * 120.00058 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99782 * 0.02562 * 14 12 11 16 16 Si 1.86791 * 120.00210 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47167 * 59.99879 * 16 14 12 18 18 H 1.48497 * 109.47171 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47299 * 300.00303 * 16 14 12 20 20 N 1.31132 * 106.89893 * 359.76747 * 10 9 8 21 21 H 1.08996 * 109.47002 * 299.99354 * 1 2 3 22 22 H 1.08995 * 109.47093 * 59.99738 * 1 2 3 23 23 H 1.09006 * 109.46773 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46862 * 240.00336 * 2 1 3 25 25 H 1.09003 * 109.47414 * 179.97438 * 3 2 1 26 26 H 1.08995 * 109.47111 * 300.00579 * 3 2 1 27 27 H 1.09004 * 109.46995 * 60.00418 * 3 2 1 28 28 H 1.09000 * 109.47490 * 59.99859 * 5 4 2 29 29 H 1.09001 * 109.47232 * 299.99213 * 5 4 2 30 30 H 1.08993 * 109.46955 * 299.99993 * 6 5 4 31 31 H 1.09000 * 109.47050 * 59.99822 * 6 5 4 32 32 H 1.08994 * 109.46823 * 29.98007 * 11 10 9 33 33 H 1.09001 * 109.47261 * 149.97419 * 11 10 9 34 34 H 0.96995 * 119.99646 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2002 -2.0783 0.9884 6 6 2.7092 -2.6926 2.2940 7 6 2.9130 -4.1739 2.1062 8 7 4.0045 -4.7557 1.7077 9 8 3.8464 -5.9574 1.6597 10 6 2.6010 -6.2657 2.0338 11 6 2.0031 -7.6468 2.1115 12 6 1.3706 -7.9956 0.7889 13 1 1.3984 -7.2877 -0.0263 14 6 0.7565 -9.2184 0.6195 15 7 0.7222 -10.0802 1.6124 16 14 -0.0269 -9.6510 -1.0201 17 1 1.0062 -9.6176 -2.0864 18 1 -0.6161 -11.0119 -0.9434 19 1 -1.0940 -8.6671 -1.3339 20 7 1.9999 -5.1371 2.3247 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 3.1300 1.4425 0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.6767 1.9563 0.8901 28 1 2.9320 -2.2467 0.1984 29 1 1.2539 -2.5435 0.7123 30 1 3.6555 -2.2273 2.5697 31 1 1.9776 -2.5241 3.0843 32 1 2.7862 -8.3692 2.3415 33 1 1.2451 -7.6711 2.8944 34 1 0.2899 -10.9402 1.4934 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395434879.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:47 Heat of formation + Delta-G solvation = -4.139197 kcal Electronic energy + Delta-G solvation = -16593.271904 eV Core-core repulsion = 13722.038062 eV Total energy + Delta-G solvation = -2871.233842 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.80725 -38.57457 -35.59084 -34.15954 -33.20310 -32.11482 -30.17036 -28.40165 -27.42051 -24.22236 -24.03306 -22.29541 -21.49109 -20.28897 -17.56576 -17.02413 -16.60122 -16.28000 -15.67757 -15.11991 -14.84899 -14.10210 -13.71047 -13.46198 -12.96147 -12.65538 -12.49646 -12.43142 -12.14256 -12.01998 -11.79395 -11.46004 -11.22678 -11.06976 -10.84872 -10.78504 -10.69110 -10.33288 -10.12675 -9.88655 -9.65471 -8.97775 -8.63413 -6.27155 -4.33161 1.90032 2.85535 3.24115 3.28200 3.31587 3.46777 3.78182 4.28710 4.40318 4.65760 4.69752 4.84679 4.99969 5.09700 5.15626 5.18297 5.37064 5.39300 5.48813 5.59755 5.65874 5.80160 5.87637 5.95834 6.05647 6.11094 6.56086 6.65866 7.09656 7.11403 7.16787 7.65691 7.89516 8.66669 8.90905 9.31725 10.83266 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.026062 B = 0.004813 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.083867 B = 5816.456430 C = 6576.158470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.081 3.919 3 C -0.149 4.149 4 O -0.382 6.382 5 C 0.071 3.929 6 C -0.018 4.018 7 C 0.158 3.842 8 N -0.406 5.406 9 O 0.062 5.938 10 C 0.239 3.761 11 C 0.101 3.899 12 C -0.525 4.525 13 H 0.060 0.940 14 C 0.067 3.933 15 N -0.888 5.888 16 Si 0.906 3.094 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 N -0.505 5.505 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.506 16.020 -2.015 16.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.023 3.977 3 C -0.206 4.206 4 O -0.302 6.302 5 C -0.007 4.007 6 C -0.057 4.057 7 C -0.116 4.116 8 N -0.119 5.119 9 O 0.007 5.993 10 C 0.021 3.979 11 C 0.062 3.938 12 C -0.564 4.564 13 H 0.079 0.921 14 C -0.137 4.137 15 N -0.525 5.525 16 Si 0.733 3.267 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.200 1.200 20 N -0.239 5.239 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.111 0.889 31 H 0.118 0.882 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.871 16.609 -1.834 16.814 hybrid contribution -0.572 -0.634 -1.112 1.402 sum 1.299 15.975 -2.946 16.296 Atomic orbital electron populations 1.22310 0.95900 1.02740 1.02456 1.22076 0.93776 0.93654 0.88189 1.21858 1.01767 0.94523 1.02435 1.87852 1.86680 1.19849 1.35804 1.22386 1.00213 0.81296 0.96821 1.19547 1.03748 0.83898 0.98495 1.25409 0.86690 0.98857 1.00605 1.74513 1.24148 0.90756 1.22465 1.85259 1.33166 1.17684 1.63225 1.30183 0.79856 1.00077 0.87759 1.18216 0.96392 0.78801 1.00391 1.20747 1.37631 1.01672 0.96378 0.92137 1.24924 0.95538 0.95701 0.97495 1.69912 1.43081 1.08081 1.31415 0.86410 0.79604 0.77642 0.83021 1.19898 1.20883 1.19957 1.71974 1.29822 0.97766 1.24382 0.91709 0.91741 0.92169 0.92226 0.92019 0.91325 0.91770 0.93019 0.92386 0.88875 0.88202 0.92327 0.91267 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 9.53 37.16 0.35 -1.37 16 2 C 0.08 0.86 3.34 -26.73 -0.09 0.77 16 3 C -0.15 -1.26 9.56 37.16 0.36 -0.91 16 4 O -0.38 -5.03 9.99 -35.23 -0.35 -5.38 16 5 C 0.07 0.99 5.73 37.16 0.21 1.21 16 6 C -0.02 -0.27 6.21 -27.88 -0.17 -0.44 16 7 C 0.16 3.04 7.47 -156.36 -1.17 1.87 16 8 N -0.41 -8.29 12.16 30.90 0.38 -7.91 16 9 O 0.06 1.34 11.31 18.11 0.20 1.54 16 10 C 0.24 5.41 7.70 -13.06 -0.10 5.30 16 11 C 0.10 2.46 5.60 -29.04 -0.16 2.29 16 12 C -0.53 -14.04 9.09 -34.44 -0.31 -14.35 16 13 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 14 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 15 N -0.89 -24.53 13.29 55.43 0.74 -23.79 16 16 Si 0.91 20.60 29.54 -169.99 -5.02 15.57 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 N -0.51 -11.06 11.55 -9.87 -0.11 -11.17 16 21 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.65 7.87 -51.93 -0.41 0.24 16 24 H 0.06 0.61 7.79 -51.93 -0.40 0.21 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.73 8.09 -51.93 -0.42 0.31 16 29 H 0.06 0.86 7.87 -51.93 -0.41 0.45 16 30 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 31 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.07 1.75 8.14 -51.93 -0.42 1.32 16 34 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 299.79 15.07 4.52 4.52 Total: -1.00 -28.41 299.79 -5.82 -34.23 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -4.99 Total: -3.67 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -1.18 Total: -3.94 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 1.00 Total: -42.88 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: -0.15 Total: -3.83 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.41 -5.82 -34.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395434879.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.089 kcal (2) G-P(sol) polarization free energy of solvation -28.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds