Wall clock time and date at job start Mon Mar 30 2020 03:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42903 * 113.99881 * 2 1 4 4 C 1.52994 * 109.47009 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.47296 * 60.00072 * 4 3 2 6 6 C 1.52999 * 109.47453 * 300.00311 * 4 3 2 7 7 C 1.50697 * 109.47136 * 180.02562 * 4 3 2 8 8 N 1.29949 * 126.29094 * 359.97438 * 7 4 3 9 9 O 1.21299 * 110.25253 * 180.02562 * 8 7 4 10 10 C 1.33638 * 109.81146 * 359.97438 * 9 8 7 11 11 C 1.50697 * 126.54638 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47266 * 270.02308 * 11 10 9 13 13 H 1.07999 * 119.99988 * 0.02562 * 12 11 10 14 14 C 1.37885 * 120.00047 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 11 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47163 * 59.99902 * 16 14 12 18 18 H 1.48495 * 109.47159 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47290 * 299.99897 * 16 14 12 20 20 N 1.31126 * 106.90184 * 0.22991 * 10 9 8 21 21 H 1.08995 * 109.46958 * 299.99710 * 1 2 3 22 22 H 1.08999 * 109.46951 * 59.99775 * 1 2 3 23 23 H 1.09000 * 109.46858 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46845 * 60.00150 * 3 2 1 25 25 H 1.08992 * 109.47203 * 300.00001 * 3 2 1 26 26 H 1.08997 * 109.47369 * 179.97438 * 5 4 3 27 27 H 1.09005 * 109.46724 * 299.99987 * 5 4 3 28 28 H 1.09006 * 109.46851 * 59.99728 * 5 4 3 29 29 H 1.09002 * 109.47045 * 300.00145 * 6 4 3 30 30 H 1.08996 * 109.47410 * 59.99835 * 6 4 3 31 31 H 1.09004 * 109.47631 * 180.02562 * 6 4 3 32 32 H 1.09004 * 109.47205 * 150.02402 * 11 10 9 33 33 H 1.08997 * 109.47395 * 30.02894 * 11 10 9 34 34 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9875 0.4252 -1.2483 6 6 3.9865 0.4256 1.2501 7 6 4.1484 2.5614 0.0013 8 7 3.5044 3.6901 0.0008 9 8 4.2847 4.6187 0.0011 10 6 5.5386 4.1567 0.0023 11 6 6.7992 4.9824 0.0024 12 6 7.2201 5.2570 -1.4184 13 1 6.6332 4.8724 -2.2393 14 6 8.3545 5.9992 -1.6702 15 7 9.0662 6.4722 -0.6705 16 14 8.8757 6.3402 -3.4313 17 1 7.7977 7.0837 -4.1315 18 1 10.1180 7.1537 -3.4311 19 1 9.1255 5.0545 -4.1313 20 7 5.4626 2.8477 -0.0023 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.6886 1.8464 0.8900 25 1 1.6887 1.8464 -0.8899 26 1 5.0741 0.3395 -1.2481 27 1 3.5441 -0.5706 -1.2483 28 1 3.6661 0.9660 -2.1386 29 1 3.6645 0.9666 2.1399 30 1 3.5432 -0.5701 1.2502 31 1 5.0731 0.3399 1.2509 32 1 7.5907 4.4373 0.5168 33 1 6.6154 5.9262 0.5157 34 1 9.8644 6.9940 -0.8477 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395458834.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:04 Heat of formation + Delta-G solvation = 1.774370 kcal Electronic energy + Delta-G solvation = -17212.177623 eV Core-core repulsion = 14341.200213 eV Total energy + Delta-G solvation = -2870.977410 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.77914 -38.66593 -36.21625 -34.43170 -33.25670 -31.56583 -28.54625 -27.49996 -27.17387 -25.69777 -23.92679 -23.56062 -21.58278 -19.19033 -17.47264 -16.93175 -16.31941 -15.97082 -15.88493 -15.49611 -14.72133 -14.16189 -13.66853 -13.48214 -13.10322 -12.49240 -12.33954 -12.32643 -11.80007 -11.74847 -11.39252 -11.30793 -11.23890 -11.02022 -10.80905 -10.74329 -10.60847 -10.24702 -10.07082 -9.86013 -9.75732 -8.94444 -8.61746 -6.25540 -4.31297 1.95739 2.98404 3.25727 3.29561 3.33599 3.44806 3.80152 4.23915 4.32100 4.66468 4.87312 5.05687 5.10045 5.16385 5.19074 5.24549 5.47794 5.48609 5.60049 5.84210 5.87286 5.94189 5.96991 6.18399 6.33102 6.37447 6.61610 6.68924 7.01444 7.11360 7.18719 7.67646 7.91391 8.68657 8.94660 9.33542 10.84848 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.043597 B = 0.005029 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.090630 B = 5565.822164 C = 5674.104449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.386 6.386 3 C 0.078 3.922 4 C 0.037 3.963 5 C -0.132 4.132 6 C -0.131 4.131 7 C 0.169 3.831 8 N -0.413 5.413 9 O 0.059 5.941 10 C 0.239 3.761 11 C 0.101 3.899 12 C -0.524 4.524 13 H 0.060 0.940 14 C 0.067 3.933 15 N -0.888 5.888 16 Si 0.906 3.094 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.274 1.274 20 N -0.500 5.500 21 H 0.040 0.960 22 H 0.040 0.960 23 H 0.085 0.915 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.004 -9.936 1.956 15.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.304 6.304 3 C 0.001 3.999 4 C 0.035 3.965 5 C -0.190 4.190 6 C -0.189 4.189 7 C -0.104 4.104 8 N -0.126 5.126 9 O 0.005 5.995 10 C 0.021 3.979 11 C 0.062 3.938 12 C -0.563 4.563 13 H 0.079 0.921 14 C -0.137 4.137 15 N -0.525 5.525 16 Si 0.733 3.267 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.199 1.199 20 N -0.233 5.233 21 H 0.059 0.941 22 H 0.059 0.941 23 H 0.104 0.896 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.425 -10.319 2.008 16.275 hybrid contribution 0.205 0.714 -0.943 1.200 sum -12.220 -9.605 1.065 15.579 Atomic orbital electron populations 1.22720 0.81053 1.02541 1.00063 1.87808 1.19526 1.27635 1.95473 1.22381 0.92101 0.84287 1.01176 1.18683 0.92199 0.86614 0.98988 1.21767 1.02429 0.99919 0.94915 1.21759 1.02349 0.99983 0.94853 1.25395 0.87668 0.95969 1.01380 1.74471 1.17843 0.96565 1.23737 1.85240 1.15872 1.31897 1.66509 1.30175 0.89264 0.89423 0.89071 1.18202 0.82054 0.93362 1.00133 1.20754 1.10585 1.34910 0.90075 0.92126 1.24921 0.95753 0.94913 0.98063 1.69915 1.16634 1.34928 1.31068 0.86413 0.78028 0.78550 0.83707 1.19928 1.20914 1.19923 1.71876 1.16163 1.12111 1.23196 0.94136 0.94104 0.89620 0.92707 0.92667 0.91191 0.90869 0.92845 0.92923 0.90847 0.91259 0.91312 0.92409 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.39 -4.83 9.35 -35.23 -0.33 -5.16 16 3 C 0.08 1.08 4.31 37.15 0.16 1.24 16 4 C 0.04 0.58 0.82 -155.66 -0.13 0.45 16 5 C -0.13 -1.92 8.31 37.16 0.31 -1.62 16 6 C -0.13 -1.83 8.31 37.16 0.31 -1.52 16 7 C 0.17 3.29 6.40 -156.36 -1.00 2.29 16 8 N -0.41 -8.41 11.47 30.90 0.35 -8.06 16 9 O 0.06 1.27 11.31 18.12 0.20 1.48 16 10 C 0.24 5.41 7.70 -13.06 -0.10 5.31 16 11 C 0.10 2.48 5.60 -29.04 -0.16 2.32 16 12 C -0.52 -14.08 9.09 -34.44 -0.31 -14.40 16 13 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 14 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 15 N -0.89 -24.62 13.29 55.43 0.74 -23.88 16 16 Si 0.91 20.73 29.54 -169.99 -5.02 15.71 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 20 N -0.50 -10.93 11.55 -9.87 -0.11 -11.04 16 21 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 22 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.07 0.93 7.68 -51.93 -0.40 0.53 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.90 7.68 -51.93 -0.40 0.50 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 33 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 295.82 15.07 4.46 4.46 Total: -1.00 -28.37 295.82 -4.61 -32.98 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -4.99 Total: -3.68 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: 0.09 Total: -2.81 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 0.98 Total: -42.98 kcal Atomic # 8 Polarization: -3.55 SS G_CDS: -0.12 Total: -3.68 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.37 -4.61 -32.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395458834.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.758 kcal (2) G-P(sol) polarization free energy of solvation -28.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds