Wall clock time and date at job start Mon Mar 30 2020 03:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47095 * 2 1 4 4 C 1.53000 * 115.54871 * 34.33618 * 3 2 1 5 5 C 1.53069 * 117.51660 * 248.60884 * 3 2 1 6 6 C 1.53000 * 59.98584 * 252.52266 * 5 3 2 7 7 H 1.09002 * 117.49833 * 107.50105 * 6 5 3 8 8 N 1.46502 * 117.50101 * 252.50061 * 6 5 3 9 9 C 1.34780 * 119.99864 * 223.74887 * 8 6 5 10 10 O 1.21444 * 119.99684 * 359.97438 * 9 8 6 11 11 C 1.48823 * 119.99882 * 179.97438 * 9 8 6 12 12 O 1.21505 * 120.00228 * 359.97438 * 11 9 8 13 13 N 1.34779 * 119.99916 * 179.97438 * 11 9 8 14 14 C 1.36127 * 119.99831 * 180.02562 * 13 11 9 15 15 H 1.07994 * 120.00010 * 0.02562 * 14 13 11 16 16 C 1.39587 * 119.99870 * 180.02562 * 14 13 11 17 17 N 1.31021 * 119.99893 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 119.99971 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47425 * 59.99719 * 18 16 14 20 20 H 1.48502 * 109.47146 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47146 * 299.99657 * 18 16 14 22 22 H 1.09005 * 109.47132 * 299.99576 * 1 2 3 23 23 H 1.08997 * 109.47279 * 59.99412 * 1 2 3 24 24 H 1.08995 * 109.46948 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47132 * 240.00424 * 2 1 3 26 26 H 1.08997 * 109.47279 * 120.00588 * 2 1 3 27 27 H 1.09003 * 109.47376 * 205.67158 * 4 3 2 28 28 H 1.09006 * 109.46992 * 325.66339 * 4 3 2 29 29 H 1.08999 * 109.47689 * 85.66017 * 4 3 2 30 30 H 1.09008 * 117.49334 * 145.03821 * 5 3 2 31 31 H 1.08999 * 117.51639 * 0.02562 * 5 3 2 32 32 H 0.96998 * 120.00294 * 43.74189 * 8 6 5 33 33 H 0.97000 * 119.99861 * 0.02562 * 13 11 9 34 34 H 0.96997 * 119.99424 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1853 2.4445 0.7786 5 6 2.7425 1.9442 -1.2640 6 6 3.5550 1.6562 0.0000 7 1 4.1884 0.7691 0.0000 8 7 4.0761 2.8046 0.7456 9 6 5.3410 2.7883 1.2108 10 8 6.0485 1.8214 1.0123 11 6 5.8706 3.9552 1.9676 12 8 5.1629 4.9227 2.1658 13 7 7.1353 3.9387 2.4332 14 6 7.6195 5.0058 3.1260 15 1 6.9901 5.8654 3.3028 16 6 8.9295 4.9889 3.6077 17 7 9.6928 3.9458 3.3936 18 14 9.5937 6.4529 4.5589 19 1 8.7675 6.6702 5.7736 20 1 10.9997 6.1880 4.9568 21 1 9.5423 7.6646 3.7020 22 1 -0.3634 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.3351 3.4442 0.3706 28 1 0.1339 2.1704 0.6913 29 1 1.4777 2.4330 1.8286 30 1 2.5955 2.9882 -1.5408 31 1 2.8411 1.2468 -2.0959 32 1 3.5110 3.5768 0.9043 33 1 7.7004 3.1664 2.2747 34 1 10.6030 3.9340 3.7288 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397129728.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:12 Heat of formation + Delta-G solvation = -60.840015 kcal Electronic energy + Delta-G solvation = -16864.266764 eV Core-core repulsion = 13990.574190 eV Total energy + Delta-G solvation = -2873.692574 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.81731 -38.45443 -36.95299 -34.42639 -33.44109 -31.51918 -31.10753 -28.24893 -25.98982 -24.01977 -23.51570 -21.20502 -19.55610 -18.83267 -18.31126 -16.91603 -16.17532 -15.22007 -15.02031 -14.69831 -14.61663 -14.47218 -13.87595 -13.32284 -12.94621 -12.70731 -12.54656 -12.42927 -12.20604 -11.79725 -11.75526 -11.26300 -11.18631 -10.98177 -10.74079 -10.58704 -10.44603 -10.35105 -9.73888 -9.71854 -8.41568 -8.28823 -8.23664 -6.68211 -4.00481 2.39235 3.14392 3.16271 3.17368 3.33273 3.76694 4.04641 4.29729 4.62929 4.72059 4.83774 4.94107 5.02403 5.16761 5.18895 5.38218 5.46619 5.71438 5.74455 5.77990 5.83455 5.91682 5.95139 6.04415 6.10952 6.12773 6.31738 6.81892 7.29770 7.67731 7.86649 8.31594 8.61088 8.94660 9.30228 9.83657 10.46525 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.057116 B = 0.004469 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.113689 B = 6264.454895 C = 6492.020859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.085 4.085 3 C -0.135 4.135 4 C -0.126 4.126 5 C -0.187 4.187 6 C 0.092 3.908 7 H 0.136 0.864 8 N -0.685 5.685 9 C 0.517 3.483 10 O -0.545 6.545 11 C 0.393 3.607 12 O -0.598 6.598 13 N -0.497 5.497 14 C -0.307 4.307 15 H 0.112 0.888 16 C 0.031 3.969 17 N -0.868 5.868 18 Si 0.940 3.060 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.269 1.269 22 H 0.060 0.940 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.411 0.589 33 H 0.405 0.595 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.057 -5.478 -5.880 15.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.123 4.123 3 C -0.137 4.137 4 C -0.182 4.182 5 C -0.225 4.225 6 C -0.015 4.015 7 H 0.153 0.847 8 N -0.337 5.337 9 C 0.302 3.698 10 O -0.422 6.422 11 C 0.178 3.822 12 O -0.487 6.487 13 N -0.131 5.131 14 C -0.437 4.437 15 H 0.130 0.870 16 C -0.176 4.176 17 N -0.506 5.506 18 Si 0.766 3.234 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.194 1.194 22 H 0.079 0.921 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.247 0.753 33 H 0.240 0.760 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.759 -5.598 -5.823 15.101 hybrid contribution 0.464 0.543 0.314 0.780 sum -12.295 -5.054 -5.510 14.390 Atomic orbital electron populations 1.21824 0.95594 1.01310 1.02037 1.21045 0.95872 0.93196 1.02182 1.22067 0.93951 0.96903 1.00752 1.21451 0.99489 0.97318 0.99991 1.23751 1.04235 1.02469 0.92089 1.21727 0.91878 0.92127 0.95745 0.84687 1.45060 1.13839 1.19393 1.55368 1.20712 0.81575 0.88297 0.79211 1.90678 1.57643 1.35729 1.58153 1.18900 0.84856 0.88713 0.89766 1.90579 1.58075 1.35689 1.64374 1.41557 1.10162 1.18301 1.43096 1.19850 0.96763 0.97369 1.29735 0.86982 1.25597 0.95857 0.98681 0.97427 1.69482 1.09130 1.29095 1.42887 0.85767 0.77687 0.80253 0.79720 1.19347 1.20571 1.19358 0.92147 0.92643 0.92922 0.91670 0.91440 0.92371 0.91214 0.91807 0.88502 0.88234 0.75289 0.75963 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.92 37.16 0.33 -0.88 16 2 C -0.09 -0.82 6.12 -26.73 -0.16 -0.99 16 3 C -0.14 -1.53 2.47 -154.47 -0.38 -1.91 16 4 C -0.13 -1.35 8.49 37.16 0.32 -1.04 16 5 C -0.19 -2.16 9.75 -26.70 -0.26 -2.42 16 6 C 0.09 1.34 6.12 -67.93 -0.42 0.92 16 7 H 0.14 2.10 7.40 -51.93 -0.38 1.72 16 8 N -0.69 -12.15 5.34 -54.43 -0.29 -12.44 16 9 C 0.52 11.46 7.87 -11.88 -0.09 11.37 16 10 O -0.55 -12.96 16.03 5.41 0.09 -12.87 16 11 C 0.39 10.03 7.82 -11.88 -0.09 9.93 16 12 O -0.60 -16.15 16.03 5.36 0.09 -16.07 16 13 N -0.50 -13.40 5.25 -11.59 -0.06 -13.46 16 14 C -0.31 -8.48 9.67 -15.14 -0.15 -8.63 16 15 H 0.11 3.15 7.15 -52.49 -0.38 2.77 16 16 C 0.03 0.82 5.51 -17.39 -0.10 0.72 16 17 N -0.87 -23.29 13.03 55.53 0.72 -22.56 16 18 Si 0.94 20.07 29.56 -169.99 -5.02 15.05 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 20 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 22 H 0.06 0.48 6.45 -51.93 -0.33 0.15 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.58 7.90 -51.93 -0.41 0.17 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.62 7.61 -51.93 -0.40 0.23 16 28 H 0.07 0.63 5.58 -51.93 -0.29 0.34 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.10 1.11 8.05 -51.92 -0.42 0.69 16 31 H 0.10 1.00 8.05 -51.93 -0.42 0.58 16 32 H 0.41 6.94 7.15 -40.82 -0.29 6.65 16 33 H 0.40 10.98 7.35 -40.82 -0.30 10.68 16 34 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 LS Contribution 292.86 15.07 4.41 4.41 Total: -1.00 -30.09 292.86 -5.51 -35.60 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -4.44 Total: 15.26 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -1.00 Total: 7.08 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.37 Total: -48.46 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: 0.17 Total: -28.94 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.09 -5.51 -35.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397129728.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.243 kcal (2) G-P(sol) polarization free energy of solvation -30.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds