Wall clock time and date at job start Mon Mar 30 2020 03:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47095 * 2 1 4 4 C 1.53000 * 115.54871 * 34.33618 * 3 2 1 5 5 C 1.53069 * 117.51660 * 248.60884 * 3 2 1 6 6 C 1.53000 * 59.98584 * 252.52266 * 5 3 2 7 7 H 1.09002 * 117.49833 * 107.50105 * 6 5 3 8 8 N 1.46502 * 117.50101 * 252.50061 * 6 5 3 9 9 C 1.34780 * 119.99864 * 223.74887 * 8 6 5 10 10 O 1.21444 * 119.99684 * 359.97438 * 9 8 6 11 11 C 1.48823 * 119.99882 * 179.97438 * 9 8 6 12 12 O 1.21505 * 120.00228 * 359.97438 * 11 9 8 13 13 N 1.34779 * 119.99916 * 179.97438 * 11 9 8 14 14 C 1.36127 * 119.99831 * 180.02562 * 13 11 9 15 15 H 1.07994 * 120.00010 * 0.02562 * 14 13 11 16 16 C 1.39587 * 119.99870 * 180.02562 * 14 13 11 17 17 N 1.31021 * 119.99893 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 119.99971 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47425 * 59.99719 * 18 16 14 20 20 H 1.48502 * 109.47146 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47146 * 299.99657 * 18 16 14 22 22 H 1.09005 * 109.47132 * 299.99576 * 1 2 3 23 23 H 1.08997 * 109.47279 * 59.99412 * 1 2 3 24 24 H 1.08995 * 109.46948 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47132 * 240.00424 * 2 1 3 26 26 H 1.08997 * 109.47279 * 120.00588 * 2 1 3 27 27 H 1.09003 * 109.47376 * 205.67158 * 4 3 2 28 28 H 1.09006 * 109.46992 * 325.66339 * 4 3 2 29 29 H 1.08999 * 109.47689 * 85.66017 * 4 3 2 30 30 H 1.09008 * 117.49334 * 145.03821 * 5 3 2 31 31 H 1.08999 * 117.51639 * 0.02562 * 5 3 2 32 32 H 0.96998 * 120.00294 * 43.74189 * 8 6 5 33 33 H 0.97000 * 119.99861 * 0.02562 * 13 11 9 34 34 H 0.96997 * 119.99424 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1853 2.4445 0.7786 5 6 2.7425 1.9442 -1.2640 6 6 3.5550 1.6562 0.0000 7 1 4.1884 0.7691 0.0000 8 7 4.0761 2.8046 0.7456 9 6 5.3410 2.7883 1.2108 10 8 6.0485 1.8214 1.0123 11 6 5.8706 3.9552 1.9676 12 8 5.1629 4.9227 2.1658 13 7 7.1353 3.9387 2.4332 14 6 7.6195 5.0058 3.1260 15 1 6.9901 5.8654 3.3028 16 6 8.9295 4.9889 3.6077 17 7 9.6928 3.9458 3.3936 18 14 9.5937 6.4529 4.5589 19 1 8.7675 6.6702 5.7736 20 1 10.9997 6.1880 4.9568 21 1 9.5423 7.6646 3.7020 22 1 -0.3634 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.3351 3.4442 0.3706 28 1 0.1339 2.1704 0.6913 29 1 1.4777 2.4330 1.8286 30 1 2.5955 2.9882 -1.5408 31 1 2.8411 1.2468 -2.0959 32 1 3.5110 3.5768 0.9043 33 1 7.7004 3.1664 2.2747 34 1 10.6030 3.9340 3.7288 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397129728.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:12 Heat of formation + Delta-G solvation = -82.081288 kcal Electronic energy + Delta-G solvation = -16865.187855 eV Core-core repulsion = 13990.574190 eV Total energy + Delta-G solvation = -2874.613664 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.43840 -39.89046 -38.74289 -36.41024 -34.81998 -33.47033 -32.26419 -29.13930 -27.96771 -25.41438 -24.62652 -22.55820 -21.27881 -20.44188 -19.80314 -18.63797 -17.81799 -16.94222 -16.53278 -16.30601 -15.98599 -15.62812 -15.39747 -14.81028 -14.69319 -14.06821 -13.70059 -13.65215 -13.37356 -13.01847 -12.96851 -12.60873 -12.60574 -12.32035 -12.13151 -12.11886 -11.90895 -11.67151 -11.64884 -10.73768 -10.29809 -10.26611 -9.72879 -8.67634 -6.12848 0.54406 1.40400 1.48565 1.53328 1.74674 2.27842 2.29880 2.81450 3.14370 3.20453 3.61791 3.81217 3.89086 3.98619 4.07125 4.45027 4.54066 4.72745 4.78853 4.88281 4.91280 4.93875 5.10146 5.20828 5.23337 5.27191 5.35432 5.39287 5.54964 5.65989 6.13463 6.35848 6.78672 6.98683 7.24981 7.77007 8.47960 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.057116 B = 0.004469 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.113689 B = 6264.454895 C = 6492.020859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 C -0.114 4.114 4 C -0.129 4.129 5 C -0.166 4.166 6 C 0.050 3.950 7 H 0.123 0.877 8 N -0.664 5.664 9 C 0.521 3.479 10 O -0.567 6.567 11 C 0.388 3.612 12 O -0.617 6.617 13 N -0.508 5.508 14 C -0.347 4.347 15 H 0.100 0.900 16 C -0.004 4.004 17 N -0.895 5.895 18 Si 1.012 2.988 19 H -0.263 1.263 20 H -0.266 1.266 21 H -0.263 1.263 22 H 0.060 0.940 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.050 0.950 30 H 0.102 0.898 31 H 0.120 0.880 32 H 0.415 0.585 33 H 0.401 0.599 34 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.264 -5.443 -6.385 16.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 C -0.116 4.116 4 C -0.186 4.186 5 C -0.204 4.204 6 C -0.056 4.056 7 H 0.140 0.860 8 N -0.315 5.315 9 C 0.305 3.695 10 O -0.446 6.446 11 C 0.173 3.827 12 O -0.507 6.507 13 N -0.142 5.142 14 C -0.477 4.477 15 H 0.118 0.882 16 C -0.208 4.208 17 N -0.532 5.532 18 Si 0.832 3.168 19 H -0.188 1.188 20 H -0.190 1.190 21 H -0.188 1.188 22 H 0.079 0.921 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.120 0.880 31 H 0.139 0.861 32 H 0.252 0.748 33 H 0.235 0.765 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.011 -5.580 -6.353 16.364 hybrid contribution 0.732 0.466 0.406 0.958 sum -13.279 -5.114 -5.947 15.422 Atomic orbital electron populations 1.21805 0.94009 1.02245 1.02404 1.21113 0.97189 0.91776 1.02413 1.22190 0.91094 0.98272 1.00001 1.21522 1.00766 0.97290 0.99034 1.23849 1.01401 1.03401 0.91791 1.21996 0.94002 0.90804 0.98753 0.85968 1.44960 1.12064 1.20427 1.54037 1.20088 0.82965 0.86970 0.79519 1.90664 1.58584 1.35987 1.59349 1.19535 0.84386 0.89489 0.89288 1.90541 1.58425 1.36768 1.65003 1.41650 1.10710 1.18154 1.43649 1.19980 0.97903 0.97731 1.32090 0.88219 1.26574 0.95251 1.01553 0.97467 1.69549 1.09709 1.30745 1.43219 0.84732 0.77456 0.76431 0.78177 1.18782 1.19041 1.18800 0.92094 0.91902 0.91824 0.90682 0.92131 0.92289 0.88918 0.93084 0.87986 0.86147 0.74766 0.76460 0.90005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.92 71.98 0.64 -1.29 16 2 C -0.09 -1.48 6.12 30.59 0.19 -1.29 16 3 C -0.11 -2.36 2.47 -52.16 -0.13 -2.48 16 4 C -0.13 -2.52 8.49 71.98 0.61 -1.91 16 5 C -0.17 -3.44 9.75 30.62 0.30 -3.14 16 6 C 0.05 1.40 6.12 44.99 0.28 1.68 16 7 H 0.12 3.80 7.40 -2.39 -0.02 3.78 16 8 N -0.66 -23.54 5.34 -444.44 -2.37 -25.91 16 9 C 0.52 23.58 7.87 87.08 0.69 24.26 16 10 O -0.57 -27.58 16.03 -3.54 -0.06 -27.64 16 11 C 0.39 20.35 7.82 87.08 0.68 21.03 16 12 O -0.62 -34.07 16.03 -3.73 -0.06 -34.13 16 13 N -0.51 -28.34 5.25 -308.87 -1.62 -29.96 16 14 C -0.35 -19.72 9.67 84.35 0.82 -18.90 16 15 H 0.10 5.78 7.15 -2.91 -0.02 5.76 16 16 C 0.00 -0.21 5.51 85.14 0.47 0.26 16 17 N -0.89 -48.34 13.03 21.77 0.28 -48.06 16 18 Si 1.01 40.78 29.56 68.60 2.03 42.81 16 19 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 20 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 21 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 22 H 0.06 0.80 6.45 -2.38 -0.02 0.78 16 23 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.07 1.13 7.90 -2.38 -0.02 1.12 16 26 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.06 1.14 7.61 -2.39 -0.02 1.12 16 28 H 0.09 1.40 5.58 -2.38 -0.01 1.39 16 29 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.10 2.06 8.05 -2.38 -0.02 2.04 16 31 H 0.12 2.03 8.05 -2.39 -0.02 2.01 16 32 H 0.41 13.92 7.15 -92.71 -0.66 13.26 16 33 H 0.40 22.60 7.35 -92.71 -0.68 21.92 16 34 H 0.29 14.32 8.30 -92.71 -0.77 13.56 16 Total: -1.00 -65.43 292.86 2.53 -62.90 By element: Atomic # 1 Polarization: 41.98 SS G_CDS: -0.21 Total: 41.77 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: 4.54 Total: 18.23 kcal Atomic # 7 Polarization: -100.22 SS G_CDS: -3.71 Total: -103.93 kcal Atomic # 8 Polarization: -61.65 SS G_CDS: -0.12 Total: -61.77 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -65.43 2.53 -62.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397129728.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.180 kcal (2) G-P(sol) polarization free energy of solvation -65.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds