Wall clock time and date at job start Mon Mar 30 2020 03:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47538 * 2 1 4 4 C 1.52997 * 115.54722 * 325.67071 * 3 2 1 5 5 C 1.52994 * 117.49691 * 111.37895 * 3 2 1 6 6 C 1.52995 * 60.00100 * 107.48971 * 5 3 2 7 7 H 1.08996 * 117.52426 * 252.51787 * 6 5 3 8 8 N 1.46504 * 117.50092 * 107.48585 * 6 5 3 9 9 C 1.34774 * 120.00240 * 136.38016 * 8 6 5 10 10 O 1.21440 * 120.00153 * 0.02562 * 9 8 6 11 11 C 1.48827 * 120.00052 * 180.02562 * 9 8 6 12 12 O 1.21502 * 120.00432 * 359.97438 * 11 9 8 13 13 N 1.34784 * 120.00046 * 180.02562 * 11 9 8 14 14 C 1.36116 * 120.00140 * 179.72741 * 13 11 9 15 15 H 1.08004 * 119.99757 * 359.97438 * 14 13 11 16 16 C 1.39585 * 120.00339 * 179.97438 * 14 13 11 17 17 N 1.31012 * 119.99681 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00288 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46922 * 90.00038 * 18 16 14 20 20 H 1.48496 * 109.47354 * 210.00235 * 18 16 14 21 21 H 1.48507 * 109.47154 * 330.00524 * 18 16 14 22 22 H 1.09008 * 109.47118 * 59.99520 * 1 2 3 23 23 H 1.08993 * 109.47879 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47049 * 300.00284 * 1 2 3 25 25 H 1.09001 * 109.47008 * 240.00266 * 2 1 3 26 26 H 1.09000 * 109.47199 * 120.00153 * 2 1 3 27 27 H 1.09003 * 109.47467 * 274.32693 * 4 3 2 28 28 H 1.09003 * 109.47477 * 34.33102 * 4 3 2 29 29 H 1.09004 * 109.46776 * 154.32576 * 4 3 2 30 30 H 1.09001 * 117.49960 * 0.02562 * 5 3 2 31 31 H 1.09001 * 117.49980 * 214.97603 * 5 3 2 32 32 H 0.97005 * 119.99919 * 316.38233 * 8 6 5 33 33 H 0.97000 * 119.99339 * 0.02562 * 13 11 9 34 34 H 0.97000 * 120.00294 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1853 2.4446 -0.7785 5 6 2.7420 1.9435 1.2637 6 6 3.5550 1.6560 0.0000 7 1 4.1884 0.7689 -0.0005 8 7 4.0762 2.8048 -0.7450 9 6 5.3404 2.7879 -1.2119 10 8 6.0474 1.8203 -1.0155 11 6 5.8700 3.9551 -1.9683 12 8 5.1626 4.9231 -2.1653 13 7 7.1341 3.9380 -2.4356 14 6 7.6166 5.0033 -3.1322 15 1 6.9864 5.8620 -3.3107 16 6 8.9259 4.9858 -3.6157 17 7 9.6905 3.9443 -3.3987 18 14 9.5879 6.4474 -4.5722 19 1 10.2119 7.4127 -3.6320 20 1 10.6042 5.9805 -5.5491 21 1 8.4738 7.1111 -5.2959 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0275 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8932 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.4778 2.4332 -1.8285 28 1 0.1339 2.1705 -0.6911 29 1 1.3352 3.4442 -0.3703 30 1 2.8407 1.2454 2.0950 31 1 2.5949 2.9874 1.5409 32 1 3.5114 3.5776 -0.9023 33 1 7.6984 3.1648 -2.2793 34 1 10.6003 3.9320 -3.7351 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397129731.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:23 Heat of formation + Delta-G solvation = -82.148589 kcal Electronic energy + Delta-G solvation = -16865.662620 eV Core-core repulsion = 13991.046037 eV Total energy + Delta-G solvation = -2874.616583 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.44014 -39.89436 -38.74537 -36.41213 -34.82083 -33.47125 -32.26571 -29.13965 -27.96884 -25.41559 -24.62530 -22.55929 -21.27948 -20.44225 -19.80343 -18.63992 -17.81928 -16.94402 -16.53315 -16.30723 -15.98335 -15.62755 -15.39783 -14.81324 -14.69362 -14.06837 -13.70693 -13.65496 -13.37381 -13.01891 -12.97689 -12.60905 -12.59576 -12.32181 -12.13048 -12.10433 -11.90861 -11.68235 -11.64912 -10.74025 -10.29824 -10.26707 -9.72788 -8.67807 -6.12893 0.54252 1.40523 1.46517 1.55196 1.74792 2.27709 2.29876 2.81575 3.14263 3.20411 3.61778 3.81195 3.89150 3.98585 4.07159 4.45021 4.54069 4.72767 4.78853 4.88266 4.91280 4.93897 5.10142 5.20839 5.23492 5.27211 5.35420 5.39251 5.54957 5.66031 6.13458 6.35801 6.78714 6.98715 7.24977 7.76977 8.48037 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.057063 B = 0.004469 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.563871 B = 6263.689550 C = 6490.876760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 C -0.114 4.114 4 C -0.129 4.129 5 C -0.166 4.166 6 C 0.049 3.951 7 H 0.123 0.877 8 N -0.664 5.664 9 C 0.521 3.479 10 O -0.567 6.567 11 C 0.388 3.612 12 O -0.617 6.617 13 N -0.508 5.508 14 C -0.346 4.346 15 H 0.100 0.900 16 C -0.004 4.004 17 N -0.895 5.895 18 Si 1.012 2.988 19 H -0.264 1.264 20 H -0.266 1.266 21 H -0.263 1.263 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.050 0.950 28 H 0.092 0.908 29 H 0.058 0.942 30 H 0.120 0.880 31 H 0.102 0.898 32 H 0.415 0.585 33 H 0.401 0.599 34 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.273 -5.450 6.397 16.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 C -0.116 4.116 4 C -0.186 4.186 5 C -0.204 4.204 6 C -0.056 4.056 7 H 0.140 0.860 8 N -0.315 5.315 9 C 0.305 3.695 10 O -0.446 6.446 11 C 0.173 3.827 12 O -0.507 6.507 13 N -0.142 5.142 14 C -0.476 4.476 15 H 0.118 0.882 16 C -0.209 4.209 17 N -0.532 5.532 18 Si 0.832 3.168 19 H -0.189 1.189 20 H -0.190 1.190 21 H -0.187 1.187 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.069 0.931 28 H 0.111 0.889 29 H 0.077 0.923 30 H 0.139 0.861 31 H 0.120 0.880 32 H 0.252 0.748 33 H 0.235 0.765 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.023 -5.586 6.364 16.381 hybrid contribution 0.740 0.463 -0.403 0.962 sum -13.283 -5.123 5.960 15.434 Atomic orbital electron populations 1.21805 0.94011 1.02245 1.02404 1.21113 0.97188 0.91779 1.02412 1.22178 0.91103 0.98276 1.00006 1.21522 1.00764 0.97288 0.99035 1.23837 1.01381 1.03409 0.91795 1.21994 0.93996 0.90799 0.98781 0.85962 1.44960 1.12127 1.20371 1.54025 1.20084 0.82960 0.86984 0.79511 1.90664 1.58583 1.35953 1.59379 1.19539 0.84371 0.89487 0.89282 1.90541 1.58416 1.36739 1.65030 1.41654 1.10794 1.18178 1.43565 1.20010 0.97944 0.97874 1.31790 0.88240 1.26571 0.95246 1.01514 0.97532 1.69550 1.09655 1.30736 1.43293 0.84674 0.78124 0.76291 0.77699 1.18901 1.19050 1.18727 0.92096 0.91824 0.91903 0.92135 0.90680 0.93089 0.88918 0.92289 0.86147 0.87977 0.74765 0.76462 0.90014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.92 71.98 0.64 -1.29 16 2 C -0.09 -1.48 6.12 30.59 0.19 -1.29 16 3 C -0.11 -2.36 2.47 -52.18 -0.13 -2.49 16 4 C -0.13 -2.52 8.49 71.98 0.61 -1.91 16 5 C -0.17 -3.43 9.75 30.59 0.30 -3.13 16 6 C 0.05 1.40 6.13 44.99 0.28 1.67 16 7 H 0.12 3.80 7.40 -2.39 -0.02 3.78 16 8 N -0.66 -23.53 5.33 -444.47 -2.37 -25.90 16 9 C 0.52 23.57 7.87 87.08 0.69 24.26 16 10 O -0.57 -27.57 16.03 -3.53 -0.06 -27.63 16 11 C 0.39 20.36 7.82 87.08 0.68 21.04 16 12 O -0.62 -34.08 16.03 -3.72 -0.06 -34.14 16 13 N -0.51 -28.35 5.25 -308.87 -1.62 -29.97 16 14 C -0.35 -19.67 9.67 84.35 0.82 -18.85 16 15 H 0.10 5.78 7.15 -2.91 -0.02 5.76 16 16 C 0.00 -0.22 5.51 85.14 0.47 0.25 16 17 N -0.89 -48.34 13.03 21.76 0.28 -48.05 16 18 Si 1.01 40.80 29.56 68.60 2.03 42.83 16 19 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 20 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 21 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 22 H 0.06 0.80 6.45 -2.38 -0.02 0.78 16 23 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.07 1.13 7.90 -2.39 -0.02 1.12 16 27 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.09 1.40 5.58 -2.39 -0.01 1.39 16 29 H 0.06 1.14 7.61 -2.38 -0.02 1.12 16 30 H 0.12 2.03 8.05 -2.39 -0.02 2.01 16 31 H 0.10 2.06 8.05 -2.39 -0.02 2.04 16 32 H 0.41 13.92 7.15 -92.70 -0.66 13.25 16 33 H 0.40 22.59 7.35 -92.71 -0.68 21.91 16 34 H 0.29 14.28 8.30 -92.71 -0.77 13.51 16 Total: -1.00 -65.48 292.85 2.53 -62.96 By element: Atomic # 1 Polarization: 41.85 SS G_CDS: -0.21 Total: 41.63 kcal Atomic # 6 Polarization: 13.73 SS G_CDS: 4.54 Total: 18.27 kcal Atomic # 7 Polarization: -100.21 SS G_CDS: -3.71 Total: -103.92 kcal Atomic # 8 Polarization: -61.65 SS G_CDS: -0.12 Total: -61.77 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -65.48 2.53 -62.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397129731.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.190 kcal (2) G-P(sol) polarization free energy of solvation -65.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds