Wall clock time and date at job start Mon Mar 30 2020 03:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30174 * 126.80448 * 2 1 4 4 O 1.20918 * 111.60837 * 179.73357 * 3 2 1 5 5 C 1.34044 * 111.56370 * 359.97438 * 4 3 2 6 6 C 1.35446 * 106.44743 * 359.97438 * 5 4 3 7 7 C 1.50704 * 128.00505 * 180.02562 * 6 5 4 8 8 N 1.46901 * 109.46987 * 259.97654 * 7 6 5 9 9 C 1.46898 * 110.99866 * 180.02562 * 8 7 6 10 10 C 1.53008 * 109.47024 * 180.02562 * 9 8 7 11 11 O 1.42889 * 109.47251 * 64.99413 * 10 9 8 12 12 C 1.42901 * 113.99954 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47301 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99884 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00482 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99538 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00499 * 180.02562 * 15 13 12 18 18 H 1.48491 * 109.47200 * 59.99887 * 17 15 13 19 19 H 1.48505 * 109.47340 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46906 * 299.99871 * 17 15 13 21 21 H 1.09006 * 109.46991 * 90.03020 * 1 2 3 22 22 H 1.08999 * 109.47361 * 210.02423 * 1 2 3 23 23 H 1.08995 * 109.47063 * 330.03017 * 1 2 3 24 24 H 1.08004 * 126.77350 * 180.02562 * 5 4 3 25 25 H 1.08999 * 109.47083 * 19.97348 * 7 6 5 26 26 H 1.09007 * 109.47121 * 139.97728 * 7 6 5 27 27 H 1.00906 * 111.00019 * 303.95417 * 8 7 6 28 28 H 1.08996 * 109.47056 * 299.99369 * 9 8 7 29 29 H 1.08997 * 109.47498 * 59.99706 * 9 8 7 30 30 H 1.09001 * 109.47058 * 185.00217 * 10 9 8 31 31 H 1.09004 * 109.46835 * 304.99485 * 10 9 8 32 32 H 1.08994 * 109.47314 * 300.00501 * 12 11 10 33 33 H 1.09000 * 109.46919 * 60.00245 * 12 11 10 34 34 H 0.97001 * 119.99962 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0052 5 6 3.6024 -0.6068 0.0100 6 6 2.3539 -1.1320 0.0078 7 6 1.9590 -2.5864 0.0119 8 7 1.6027 -3.0008 -1.3517 9 6 1.2108 -4.4161 -1.3863 10 6 0.8482 -4.8101 -2.8196 11 8 2.0097 -4.7189 -3.6470 12 6 1.7789 -5.0683 -5.0133 13 6 3.0642 -4.9379 -5.7892 14 1 3.9671 -4.6204 -5.2888 15 6 3.0876 -5.2239 -7.1377 16 7 1.9879 -5.6101 -7.7470 17 14 4.6809 -5.0629 -8.0993 18 1 5.7018 -5.9736 -7.5218 19 1 4.4408 -5.4247 -9.5194 20 1 5.1667 -3.6618 -8.0213 21 1 -0.3633 -0.0005 -1.0277 22 1 -0.3634 -0.8897 0.5142 23 1 -0.3633 0.8902 0.5133 24 1 4.5339 -1.1535 0.0156 25 1 2.7948 -3.1888 0.3679 26 1 1.1021 -2.7284 0.6704 27 1 0.8730 -2.4146 -1.7287 28 1 2.0411 -5.0315 -1.0398 29 1 0.3487 -4.5705 -0.7375 30 1 0.4731 -5.8334 -2.8313 31 1 0.0789 -4.1368 -3.1979 32 1 1.4234 -6.0971 -5.0701 33 1 1.0288 -4.4008 -5.4373 34 1 2.0042 -5.8110 -8.6959 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397884047.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:21 Heat of formation + Delta-G solvation = 7.941303 kcal Electronic energy + Delta-G solvation = -16540.056540 eV Core-core repulsion = 13669.346548 eV Total energy + Delta-G solvation = -2870.709992 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.95603 -37.41140 -36.13191 -34.35137 -32.70226 -32.03163 -29.24617 -28.74891 -26.89728 -25.07788 -22.28665 -21.65585 -21.43380 -21.28090 -17.60503 -17.48579 -16.41498 -16.01410 -15.39401 -15.15842 -14.98517 -14.26826 -13.81321 -13.68279 -13.47144 -13.27639 -12.88194 -12.58413 -12.36036 -12.12282 -11.73892 -11.22466 -11.08442 -10.81225 -10.73861 -10.50342 -10.01537 -9.92636 -9.52697 -9.07232 -8.77701 -8.27829 -8.11463 -6.07273 -4.08344 1.46599 2.11614 3.22369 3.35210 3.37485 3.41804 4.05937 4.35836 4.40125 4.43785 4.80993 4.83655 4.99074 5.28139 5.29239 5.30794 5.38588 5.43913 5.54028 5.64648 5.69825 5.74009 5.97431 6.02371 6.07190 6.26445 7.05722 7.13843 7.44522 7.46744 7.84117 8.20202 8.21692 8.64407 9.05746 9.56400 11.04399 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.025944 B = 0.004502 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.985990 B = 6218.277056 C = 6805.933678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.020 3.980 3 N -0.370 5.370 4 O 0.094 5.906 5 C -0.038 4.038 6 C -0.196 4.196 7 C 0.137 3.863 8 N -0.672 5.672 9 C 0.065 3.935 10 C 0.065 3.935 11 O -0.380 6.380 12 C 0.194 3.806 13 C -0.512 4.512 14 H 0.066 0.934 15 C 0.056 3.944 16 N -0.901 5.901 17 Si 0.908 3.092 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.275 1.275 21 H 0.082 0.918 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.218 0.782 25 H 0.085 0.915 26 H 0.039 0.961 27 H 0.341 0.659 28 H 0.080 0.920 29 H 0.035 0.965 30 H 0.041 0.959 31 H 0.034 0.966 32 H 0.002 0.998 33 H 0.003 0.997 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.565 6.845 17.455 18.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.139 4.139 3 N -0.076 5.076 4 O 0.031 5.969 5 C -0.120 4.120 6 C -0.200 4.200 7 C 0.007 3.993 8 N -0.303 5.303 9 C -0.064 4.064 10 C -0.014 4.014 11 O -0.300 6.300 12 C 0.119 3.881 13 C -0.550 4.550 14 H 0.084 0.916 15 C -0.145 4.145 16 N -0.540 5.540 17 Si 0.735 3.265 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.200 1.200 21 H 0.101 0.899 22 H 0.096 0.904 23 H 0.094 0.906 24 H 0.234 0.766 25 H 0.104 0.896 26 H 0.057 0.943 27 H 0.159 0.841 28 H 0.098 0.902 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.020 0.980 33 H 0.021 0.979 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.013 8.031 17.149 19.043 hybrid contribution -0.434 -0.920 -0.411 1.097 sum -2.447 7.111 16.738 18.350 Atomic orbital electron populations 1.20166 0.86237 1.03438 1.03603 1.23502 0.98893 0.88651 1.02887 1.73817 0.89529 1.24267 1.20032 1.84801 1.21464 1.23232 1.67446 1.25845 1.00943 0.83242 1.01983 1.21175 0.92443 0.97216 1.09195 1.20100 1.00232 0.88325 0.90615 1.60359 1.47259 1.03599 1.19122 1.22010 0.99235 0.89008 0.96123 1.22225 0.90225 0.98408 0.90509 1.87952 1.30594 1.89494 1.21953 1.20182 0.97434 0.93999 0.76435 1.21024 0.95485 1.45332 0.93134 0.91573 1.24944 0.97064 0.95171 0.97341 1.69958 1.27164 1.46159 1.10744 0.86401 0.82932 0.78774 0.78403 1.20024 1.21206 1.20012 0.89906 0.90360 0.90604 0.76569 0.89632 0.94302 0.84118 0.90159 0.94683 0.94044 0.94807 0.97976 0.97914 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.39 36.01 0.37 -0.33 16 2 C 0.02 0.25 7.33 -82.10 -0.60 -0.36 16 3 N -0.37 -5.13 12.07 33.42 0.40 -4.73 16 4 O 0.09 1.20 11.20 17.17 0.19 1.39 16 5 C -0.04 -0.41 12.26 29.74 0.36 -0.05 16 6 C -0.20 -2.29 5.84 -104.42 -0.61 -2.89 16 7 C 0.14 1.49 6.17 -4.97 -0.03 1.46 16 8 N -0.67 -9.41 6.44 -115.05 -0.74 -10.15 16 9 C 0.07 0.91 6.07 -3.82 -0.02 0.88 16 10 C 0.06 1.16 6.22 37.16 0.23 1.40 16 11 O -0.38 -9.24 10.27 -35.23 -0.36 -9.60 16 12 C 0.19 5.39 5.69 36.01 0.20 5.60 16 13 C -0.51 -15.31 9.43 -34.44 -0.32 -15.63 16 14 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 17 Si 0.91 22.14 29.54 -169.99 -5.02 17.12 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.08 0.58 7.98 -51.93 -0.41 0.17 16 23 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.22 1.58 8.06 -52.48 -0.42 1.16 16 25 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.04 0.36 7.98 -51.93 -0.41 -0.05 16 27 H 0.34 4.65 8.72 -39.29 -0.34 4.31 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 33 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 301.12 15.07 4.54 4.54 Total: -1.00 -33.72 301.12 -5.71 -39.43 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -4.94 Total: -3.08 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -0.51 Total: -8.40 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.40 Total: -41.40 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -0.17 Total: -8.21 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.72 -5.71 -39.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397884047.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.371 kcal (2) G-P(sol) polarization free energy of solvation -33.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds