Wall clock time and date at job start Mon Mar 30 2020 04:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.66959 * 2 1 4 4 C 1.53063 * 109.67739 * 239.49440 * 2 1 3 5 5 C 1.50174 * 109.89116 * 191.32864 * 4 2 1 6 6 O 1.21285 * 118.24189 * 197.55978 * 5 4 2 7 7 N 1.33351 * 123.51123 * 17.58664 * 5 4 2 8 8 C 1.45753 * 124.10340 * 357.77604 * 7 5 4 9 9 H 1.09002 * 109.29865 * 258.76086 * 8 7 5 10 10 C 1.50700 * 109.30220 * 139.17774 * 8 7 5 11 11 O 1.21279 * 119.99753 * 339.58738 * 10 8 7 12 12 N 1.34774 * 120.00224 * 159.57768 * 10 8 7 13 13 C 1.46500 * 120.00189 * 180.02562 * 12 10 8 14 14 C 1.50697 * 109.46984 * 180.02562 * 13 12 10 15 15 H 1.08001 * 120.00459 * 0.02562 * 14 13 12 16 16 C 1.37883 * 120.00020 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99397 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00226 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46970 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47227 * 120.00054 * 18 16 14 21 21 H 1.48503 * 109.46979 * 240.00366 * 18 16 14 22 22 C 1.52922 * 110.49038 * 19.07306 * 8 7 5 23 23 H 1.08998 * 109.46975 * 180.50109 * 1 2 3 24 24 H 1.08997 * 109.47750 * 300.50164 * 1 2 3 25 25 H 1.09000 * 109.47008 * 60.50261 * 1 2 3 26 26 H 1.09011 * 109.39931 * 71.20168 * 4 2 1 27 27 H 1.08999 * 109.40373 * 311.46159 * 4 2 1 28 28 H 0.96999 * 117.94986 * 177.74930 * 7 5 4 29 29 H 0.97006 * 119.99909 * 0.02562 * 12 10 8 30 30 H 1.08996 * 109.47410 * 300.00380 * 13 12 10 31 31 H 1.09001 * 109.46750 * 60.00405 * 13 12 10 32 32 H 0.97003 * 119.99395 * 179.97438 * 17 16 14 33 33 H 1.09001 * 109.60229 * 69.00284 * 22 8 7 34 34 H 1.08994 * 109.60520 * 189.49401 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0264 0.0000 4 6 2.0454 -0.7316 -1.2418 5 6 3.5212 -0.9782 -1.1137 6 8 4.1474 -1.2465 -2.1172 7 7 4.1799 -0.9183 0.0442 8 6 3.5649 -0.5628 1.3168 9 1 3.8002 0.4749 1.5532 10 6 4.1105 -1.4565 2.4007 11 8 4.6259 -2.5155 2.1111 12 7 4.0259 -1.0789 3.6917 13 6 4.5568 -1.9475 4.7452 14 6 4.3380 -1.2995 6.0881 15 1 3.8517 -0.3372 6.1506 16 6 4.7586 -1.9352 7.2370 17 7 5.3512 -3.1069 7.1608 18 14 4.4868 -1.1325 8.9017 19 1 3.8044 0.1733 8.7159 20 1 3.6435 -2.0165 9.7458 21 1 5.7968 -0.9157 9.5665 22 6 2.0469 -0.7330 1.2438 23 1 -0.3633 -1.0276 0.0090 24 1 -0.3634 0.5216 0.8854 25 1 -0.3633 0.5060 -0.8945 26 1 1.8553 -0.1227 -2.1257 27 1 1.5264 -1.6848 -1.3419 28 1 5.1277 -1.1247 0.0392 29 1 3.6134 -0.2320 3.9233 30 1 4.0426 -2.9081 4.7176 31 1 5.6239 -2.1018 4.5854 32 1 5.6475 -3.5539 7.9691 33 1 1.8007 -1.7924 1.1727 34 1 1.5879 -0.3075 2.1362 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408066931.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:05 Heat of formation + Delta-G solvation = -96.252382 kcal Electronic energy + Delta-G solvation = -17135.119803 eV Core-core repulsion = 14259.891634 eV Total energy + Delta-G solvation = -2875.228169 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.64660 -38.73244 -36.64576 -34.47746 -33.91295 -32.46651 -30.11391 -28.11489 -27.27112 -24.67459 -22.55549 -21.55771 -19.96595 -19.29925 -17.74384 -17.02785 -16.35503 -15.90217 -15.38089 -14.99415 -14.67559 -14.41899 -14.16729 -13.76164 -13.50866 -12.98124 -12.73072 -12.32642 -12.09151 -12.02975 -11.79838 -11.45499 -11.06634 -11.03368 -10.98260 -10.95986 -10.39305 -9.91457 -9.49625 -9.46142 -8.84660 -8.83082 -8.04482 -6.24151 -4.31828 2.64196 2.97512 3.18746 3.25528 3.28226 3.31546 3.85681 4.27670 4.42113 4.45561 4.56069 4.62352 5.04473 5.12411 5.18098 5.26651 5.36850 5.38799 5.47670 5.60052 5.67411 5.77904 5.90235 6.06665 6.77491 7.17105 7.23889 7.36494 7.40370 7.55871 7.87414 8.21894 8.45177 8.65555 8.90473 9.35005 10.86001 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.038487 B = 0.004980 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.351258 B = 5620.814294 C = 6142.041400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.081 0.919 4 C -0.131 4.131 5 C 0.523 3.477 6 O -0.563 6.563 7 N -0.696 5.696 8 C 0.122 3.878 9 H 0.096 0.904 10 C 0.486 3.514 11 O -0.544 6.544 12 N -0.704 5.704 13 C 0.249 3.751 14 C -0.545 4.545 15 H 0.064 0.936 16 C 0.064 3.936 17 N -0.884 5.884 18 Si 0.905 3.095 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.123 4.123 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.405 0.595 29 H 0.392 0.608 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.266 0.734 33 H 0.081 0.919 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.719 8.930 -10.641 16.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.100 0.900 4 C -0.171 4.171 5 C 0.310 3.690 6 O -0.442 6.442 7 N -0.348 5.348 8 C 0.013 3.987 9 H 0.113 0.887 10 C 0.269 3.731 11 O -0.422 6.422 12 N -0.352 5.352 13 C 0.128 3.872 14 C -0.583 4.583 15 H 0.083 0.917 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.732 3.268 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.161 4.161 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.118 0.882 27 H 0.119 0.881 28 H 0.242 0.758 29 H 0.225 0.775 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.170 7.914 -11.215 16.508 hybrid contribution 0.119 0.602 1.298 1.436 sum -9.051 8.517 -9.917 15.900 Atomic orbital electron populations 1.21807 0.93825 1.02445 1.02251 1.21269 0.96747 0.99774 0.93482 0.90014 1.21755 0.91881 1.03403 1.00054 1.20112 0.90352 0.75991 0.82497 1.90751 1.68475 1.49684 1.35284 1.45235 1.13796 1.69487 1.06243 1.20964 0.94808 0.99019 0.83932 0.88672 1.20555 0.80873 0.87360 0.84334 1.90714 1.45068 1.23790 1.82621 1.46460 1.59001 1.23816 1.05959 1.19169 0.94813 0.89858 0.83356 1.21233 1.40800 1.05701 0.90588 0.91742 1.24961 0.94612 0.94814 0.99604 1.69986 1.38537 1.14417 1.29228 0.86346 0.78044 0.79299 0.83139 1.19595 1.20760 1.20767 1.21946 0.91763 1.02838 0.99556 0.92226 0.91938 0.92248 0.88157 0.88082 0.75826 0.77485 0.95370 0.95364 0.92408 0.90079 0.88787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.20 37.16 0.34 -0.62 16 2 C -0.09 -0.77 2.80 -90.41 -0.25 -1.03 16 3 H 0.08 0.61 8.13 -51.93 -0.42 0.18 16 4 C -0.13 -1.31 5.35 -28.10 -0.15 -1.46 16 5 C 0.52 7.49 7.71 -11.87 -0.09 7.39 16 6 O -0.56 -10.24 17.78 5.55 0.10 -10.15 16 7 N -0.70 -9.88 4.78 -55.99 -0.27 -10.15 16 8 C 0.12 1.56 3.47 -69.53 -0.24 1.32 16 9 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 10 C 0.49 8.83 6.97 -10.99 -0.08 8.75 16 11 O -0.54 -12.46 16.39 5.56 0.09 -12.37 16 12 N -0.70 -13.42 5.55 -61.48 -0.34 -13.77 16 13 C 0.25 6.25 5.43 -5.20 -0.03 6.23 16 14 C -0.54 -14.10 9.28 -34.44 -0.32 -14.42 16 15 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 16 C 0.06 1.72 5.46 -17.81 -0.10 1.62 16 17 N -0.88 -25.41 13.29 55.43 0.74 -24.68 16 18 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 19 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 C -0.12 -1.27 4.58 -26.59 -0.12 -1.39 16 23 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.10 0.87 8.14 -51.92 -0.42 0.44 16 27 H 0.10 0.95 8.10 -51.93 -0.42 0.53 16 28 H 0.40 6.23 8.46 -40.82 -0.35 5.89 16 29 H 0.39 6.16 8.32 -40.82 -0.34 5.82 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 291.04 15.07 4.39 4.39 Total: -1.00 -33.20 291.04 -6.22 -39.42 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -4.86 Total: 5.77 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -1.04 Total: 6.39 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: 0.13 Total: -48.60 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: 0.19 Total: -22.52 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.20 -6.22 -39.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408066931.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.835 kcal (2) G-P(sol) polarization free energy of solvation -33.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds