Wall clock time and date at job start Mon Mar 30 2020 04:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3 13 13 O 1.21280 * 119.99901 * 120.00184 * 12 2 1 14 14 N 1.34774 * 120.00338 * 300.00305 * 12 2 1 15 15 C 1.46497 * 120.00288 * 179.97438 * 14 12 2 16 16 C 1.50699 * 109.47447 * 180.02562 * 15 14 12 17 17 O 1.21288 * 119.99625 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00325 * 180.02562 * 16 15 14 19 19 C 1.46504 * 120.00240 * 180.02562 * 18 16 15 20 20 C 1.52998 * 117.50019 * 223.74772 * 19 18 16 21 21 C 1.52999 * 117.50253 * 155.08626 * 19 18 16 22 22 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 23 23 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 24 24 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 0.97006 * 120.00251 * 0.02562 * 14 12 2 27 27 H 1.09002 * 109.47081 * 299.99975 * 15 14 12 28 28 H 1.09000 * 109.47237 * 60.00287 * 15 14 12 29 29 H 0.96996 * 120.00143 * 0.02562 * 18 16 15 30 30 H 1.09006 * 115.54924 * 9.41252 * 19 18 16 31 31 H 1.09007 * 117.49470 * 359.97438 * 20 19 18 32 32 H 1.08994 * 117.49890 * 145.01483 * 20 19 18 33 33 H 1.09001 * 117.49776 * 214.98003 * 21 19 18 34 34 H 1.09001 * 117.49461 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 6 2.0323 -0.7103 1.2305 13 8 2.7296 -1.6963 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.1946 -0.9406 3.6508 16 6 1.6919 -0.2305 4.8812 17 8 0.9942 0.7554 4.7699 18 7 2.0174 -0.6909 6.1053 19 6 1.5282 -0.0009 7.3015 20 6 2.5206 0.2209 8.4447 21 6 1.4064 -0.8187 8.5888 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.7088 1.1611 -3.4845 26 1 1.1487 0.5387 2.5436 27 1 1.8309 -1.9682 3.6507 28 1 3.2846 -0.9410 3.6510 29 1 2.5757 -1.4791 6.1944 30 1 0.7822 0.7741 7.1251 31 1 3.5374 -0.1470 8.3069 32 1 2.4273 1.1416 9.0206 33 1 0.5805 -0.5816 9.2595 34 1 1.6898 -1.8704 8.5456 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596668622.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:59 Heat of formation + Delta-G solvation = -54.253959 kcal Electronic energy + Delta-G solvation = -16688.470694 eV Core-core repulsion = 13815.063713 eV Total energy + Delta-G solvation = -2873.406981 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.11816 -38.59891 -37.29346 -33.83915 -33.65984 -33.07658 -30.52118 -27.48225 -25.07629 -22.87119 -22.76048 -21.84096 -20.80107 -19.49182 -17.35728 -16.96012 -16.20529 -15.70627 -15.56698 -15.19594 -14.59829 -14.41998 -14.04346 -13.52118 -13.03706 -12.75803 -12.69167 -12.20220 -11.96493 -11.64329 -11.41708 -10.96563 -10.88874 -10.70420 -10.64507 -10.20577 -10.09176 -9.90660 -9.07078 -8.93757 -8.64380 -8.51200 -8.29679 -5.98642 -4.02186 2.37798 2.71779 3.39075 3.41460 3.46708 3.56347 3.72080 3.98959 4.40810 4.51035 4.53598 4.59429 4.63674 5.24867 5.34027 5.43263 5.45174 5.47030 5.58551 5.69284 6.17146 6.29050 6.70998 6.90875 6.92083 7.00397 7.23642 7.53536 7.81562 7.97245 8.02769 8.19220 8.47373 9.06013 9.21959 9.62879 11.08951 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.067942 B = 0.004103 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.015821 B = 6822.312854 C = 7079.545819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.031 3.969 3 H 0.054 0.946 4 C -0.502 4.502 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.902 3.098 9 H -0.288 1.288 10 H -0.276 1.276 11 H -0.277 1.277 12 C 0.523 3.477 13 O -0.548 6.548 14 N -0.736 5.736 15 C 0.102 3.898 16 C 0.515 3.485 17 O -0.530 6.530 18 N -0.704 5.704 19 C 0.081 3.919 20 C -0.194 4.194 21 C -0.190 4.190 22 H 0.014 0.986 23 H 0.093 0.907 24 H 0.031 0.969 25 H 0.261 0.739 26 H 0.408 0.592 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.404 0.596 30 H 0.139 0.861 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.977 -1.805 19.892 19.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.010 3.990 3 H 0.072 0.928 4 C -0.541 4.541 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.730 3.270 9 H -0.214 1.214 10 H -0.202 1.202 11 H -0.202 1.202 12 C 0.313 3.687 13 O -0.425 6.425 14 N -0.394 5.394 15 C -0.026 4.026 16 C 0.302 3.698 17 O -0.406 6.406 18 N -0.355 5.355 19 C -0.025 4.025 20 C -0.233 4.233 21 C -0.228 4.228 22 H 0.033 0.967 23 H 0.112 0.888 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.245 0.755 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.239 0.761 30 H 0.156 0.844 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.893 -1.690 19.536 19.629 hybrid contribution 0.362 -0.494 -0.503 0.793 sum 1.255 -2.185 19.033 19.199 Atomic orbital electron populations 1.21749 0.96411 0.99826 1.01142 1.18869 0.94279 0.96920 0.88937 0.92801 1.21107 1.31104 1.12856 0.88990 0.90801 1.24961 0.95130 0.95081 0.99102 1.69872 1.36993 1.23064 1.23625 0.86495 0.79242 0.79680 0.81627 1.21405 1.20206 1.20219 1.22055 0.78299 0.84220 0.84136 1.90523 1.38180 1.26982 1.86771 1.46136 1.55843 1.33285 1.04171 1.20907 1.00656 0.97131 0.83883 1.20843 0.79765 0.84485 0.84697 1.90701 1.37414 1.26087 1.86386 1.45313 1.53722 1.31800 1.04637 1.21607 1.00924 0.99595 0.80421 1.23446 0.95968 1.01299 1.02564 1.23395 1.01681 0.97687 1.00072 0.96661 0.88804 0.95019 0.92901 0.75459 0.88968 0.88955 0.76104 0.84365 0.88408 0.87953 0.87844 0.88380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.87 37.16 0.33 -2.86 16 2 C 0.03 0.80 2.64 -92.93 -0.25 0.55 16 3 H 0.05 1.43 8.14 -51.92 -0.42 1.01 16 4 C -0.50 -14.46 8.37 -34.44 -0.29 -14.75 16 5 H 0.07 2.22 6.75 -52.49 -0.35 1.87 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.61 11.32 55.43 0.63 -24.98 16 8 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 9 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.52 12.17 7.15 -10.99 -0.08 12.09 16 13 O -0.55 -14.15 15.46 5.56 0.09 -14.07 16 14 N -0.74 -13.71 5.42 -61.48 -0.33 -14.04 16 15 C 0.10 1.47 6.15 -5.20 -0.03 1.44 16 16 C 0.52 6.83 7.90 -10.99 -0.09 6.74 16 17 O -0.53 -8.85 15.23 5.55 0.08 -8.77 16 18 N -0.70 -6.68 5.57 -53.80 -0.30 -6.98 16 19 C 0.08 0.71 6.43 -67.93 -0.44 0.27 16 20 C -0.19 -1.31 10.46 -26.70 -0.28 -1.58 16 21 C -0.19 -1.20 10.46 -26.69 -0.28 -1.48 16 22 H 0.01 0.30 7.56 -51.93 -0.39 -0.09 16 23 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.41 7.45 6.85 -40.82 -0.28 7.17 16 27 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.40 2.70 8.83 -40.82 -0.36 2.34 16 30 H 0.14 1.43 7.40 -51.93 -0.38 1.04 16 31 H 0.10 0.61 8.14 -51.92 -0.42 0.19 16 32 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 294.50 15.07 4.44 4.44 Total: -1.00 -33.17 294.50 -6.51 -39.68 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -4.60 Total: 5.75 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -1.49 Total: 1.97 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: -0.01 Total: -46.00 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: 0.17 Total: -22.83 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.17 -6.51 -39.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596668622.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.575 kcal (2) G-P(sol) polarization free energy of solvation -33.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds