Wall clock time and date at job start Mon Mar 30 2020 04:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.50701 * 109.47098 * 120.00393 * 2 1 3 5 5 H 1.08000 * 119.99624 * 119.99792 * 4 2 1 6 6 C 1.37872 * 119.99634 * 299.99500 * 4 2 1 7 7 N 1.31515 * 120.00230 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99703 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46973 * 90.00366 * 8 6 4 10 10 H 1.48505 * 109.47151 * 210.00011 * 8 6 4 11 11 H 1.48500 * 109.47089 * 330.00544 * 8 6 4 12 12 C 1.50703 * 109.46771 * 240.00448 * 2 1 3 13 13 O 1.21283 * 119.99488 * 239.99768 * 12 2 1 14 14 N 1.34777 * 120.00290 * 60.00208 * 12 2 1 15 15 C 1.46498 * 119.99828 * 180.27728 * 14 12 2 16 16 C 1.50700 * 109.46769 * 179.72341 * 15 14 12 17 17 O 1.21275 * 120.00486 * 359.97438 * 16 15 14 18 18 N 1.34783 * 119.99600 * 179.97438 * 16 15 14 19 19 C 1.46499 * 119.99943 * 179.97438 * 18 16 15 20 20 C 1.52992 * 117.50181 * 223.74790 * 19 18 16 21 21 C 1.52999 * 117.49989 * 155.08325 * 19 18 16 22 22 H 1.08992 * 109.47503 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46818 * 300.00015 * 1 2 3 24 24 H 1.09008 * 109.47076 * 59.99403 * 1 2 3 25 25 H 0.97000 * 119.99613 * 180.02562 * 7 6 4 26 26 H 0.97001 * 119.99727 * 359.97438 * 14 12 2 27 27 H 1.09004 * 109.46963 * 299.72135 * 15 14 12 28 28 H 1.08994 * 109.47567 * 59.72287 * 15 14 12 29 29 H 0.96995 * 120.00445 * 0.02562 * 18 16 15 30 30 H 1.09006 * 115.54880 * 9.41949 * 19 18 16 31 31 H 1.08995 * 117.49906 * 0.02562 * 20 19 18 32 32 H 1.09006 * 117.50250 * 145.02021 * 20 19 18 33 33 H 1.08994 * 117.49953 * 214.98003 * 21 19 18 34 34 H 1.08998 * 117.49561 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9429 0.8296 2.6033 8 14 2.3226 -1.1197 4.0078 9 1 3.6306 -0.5442 4.4117 10 1 1.3445 -0.9491 5.1122 11 1 2.4881 -2.5655 3.7120 12 6 2.0323 -0.7103 -1.2306 13 8 2.7295 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 2.1900 -0.9439 -3.6508 16 6 1.6831 -0.2366 -4.8812 17 8 0.9865 0.7498 -4.7699 18 7 2.0041 -0.7003 -6.1053 19 6 1.5110 -0.0131 -7.3015 20 6 0.9673 -0.8785 -8.4399 21 6 2.3176 -0.1737 -8.5916 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5140 -0.8900 25 1 0.7089 1.1612 3.4844 26 1 1.1488 0.5387 -2.5436 27 1 3.2800 -0.9444 -3.6551 28 1 1.8262 -1.9714 -3.6466 29 1 2.5610 -1.4894 -6.1944 30 1 1.0288 0.9486 -7.1259 31 1 0.9760 -1.9593 -8.2987 32 1 0.1275 -0.4862 -9.0136 33 1 2.3657 0.6820 -9.2650 34 1 3.2154 -0.7904 -8.5503 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596668623.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:02 Heat of formation + Delta-G solvation = -79.073143 kcal Electronic energy + Delta-G solvation = -16690.865894 eV Core-core repulsion = 13816.382672 eV Total energy + Delta-G solvation = -2874.483221 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.26641 -40.21112 -38.10562 -35.79230 -35.34093 -33.99123 -32.53102 -28.83913 -27.18484 -24.48486 -23.26503 -22.91544 -21.78482 -21.19062 -18.74802 -18.32462 -17.81694 -17.08456 -16.84856 -16.72160 -16.19645 -15.66912 -15.36609 -14.95725 -14.53117 -14.26529 -13.83086 -13.67213 -13.35383 -12.95823 -12.68436 -12.60254 -12.52074 -12.35948 -12.19182 -12.00411 -11.49115 -11.15532 -11.03455 -10.63431 -10.36019 -10.11713 -9.80097 -8.13549 -6.24917 1.35582 1.43179 1.43432 1.55554 1.75293 1.87729 2.41217 2.59636 2.97915 3.16019 3.54891 3.80702 4.05384 4.07980 4.23588 4.32483 4.48236 4.74443 4.77231 4.78390 4.95380 5.01165 5.03474 5.22071 5.40930 5.44766 5.49027 5.74259 5.93061 6.19668 6.35604 6.66010 6.85243 7.04578 7.38096 7.48330 8.92693 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.068076 B = 0.004106 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.209032 B = 6817.906923 C = 7078.104256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.023 3.977 3 H 0.039 0.961 4 C -0.528 4.528 5 H 0.054 0.946 6 C 0.016 3.984 7 N -0.914 5.914 8 Si 0.960 3.040 9 H -0.274 1.274 10 H -0.276 1.276 11 H -0.275 1.275 12 C 0.527 3.473 13 O -0.579 6.579 14 N -0.723 5.723 15 C 0.099 3.901 16 C 0.520 3.480 17 O -0.570 6.570 18 N -0.683 5.683 19 C 0.048 3.952 20 C -0.183 4.183 21 C -0.170 4.170 22 H 0.026 0.974 23 H 0.071 0.929 24 H 0.044 0.956 25 H 0.265 0.735 26 H 0.411 0.589 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.420 0.580 30 H 0.118 0.882 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.176 -2.629 -21.355 21.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.001 3.999 3 H 0.057 0.943 4 C -0.567 4.567 5 H 0.072 0.928 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.786 3.214 9 H -0.200 1.200 10 H -0.201 1.201 11 H -0.200 1.200 12 C 0.316 3.684 13 O -0.458 6.458 14 N -0.379 5.379 15 C -0.028 4.028 16 C 0.307 3.693 17 O -0.449 6.449 18 N -0.334 5.334 19 C -0.058 4.058 20 C -0.222 4.222 21 C -0.208 4.208 22 H 0.045 0.955 23 H 0.090 0.910 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.249 0.751 27 H 0.125 0.875 28 H 0.124 0.876 29 H 0.257 0.743 30 H 0.136 0.864 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.132 0.868 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.104 -2.520 -21.076 21.255 hybrid contribution 0.229 -0.255 0.838 0.905 sum 1.333 -2.775 -20.238 20.471 Atomic orbital electron populations 1.21561 0.95251 0.99544 1.01464 1.18819 0.95272 0.96026 0.89735 0.94291 1.21299 1.31662 1.12846 0.90860 0.92769 1.25667 0.95156 0.95768 1.01655 1.69973 1.37226 1.23757 1.24343 0.85523 0.78283 0.78844 0.78795 1.19973 1.20119 1.20017 1.21464 0.78200 0.83724 0.84970 1.90502 1.39668 1.28223 1.87380 1.45853 1.54873 1.32882 1.04295 1.21131 1.01560 0.97385 0.82676 1.20552 0.79458 0.83920 0.85371 1.90687 1.39508 1.27840 1.86898 1.45121 1.52734 1.31856 1.03734 1.21688 1.04637 0.98588 0.80855 1.23522 0.98252 0.99844 1.00551 1.23490 0.95852 1.04008 0.97465 0.95451 0.90982 0.93729 0.92608 0.75139 0.87499 0.87563 0.74250 0.86401 0.87534 0.87264 0.86841 0.87024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.77 8.87 71.98 0.64 -5.13 16 2 C 0.02 1.18 2.64 -12.28 -0.03 1.15 16 3 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 4 C -0.53 -30.95 8.37 25.60 0.21 -30.74 16 5 H 0.05 3.34 6.75 -2.91 -0.02 3.32 16 6 C 0.02 0.93 5.30 84.65 0.45 1.38 16 7 N -0.91 -52.43 11.32 21.45 0.24 -52.18 16 8 Si 0.96 45.20 29.54 68.60 2.03 47.22 16 9 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 12 C 0.53 24.61 7.15 87.66 0.63 25.24 16 13 O -0.58 -30.01 15.46 -3.04 -0.05 -30.06 16 14 N -0.72 -26.48 5.42 -466.79 -2.53 -29.01 16 15 C 0.10 2.72 6.15 85.63 0.53 3.25 16 16 C 0.52 13.15 7.90 87.66 0.69 13.85 16 17 O -0.57 -18.82 15.23 -3.01 -0.05 -18.86 16 18 N -0.68 -11.66 5.57 -442.54 -2.46 -14.12 16 19 C 0.05 0.77 6.43 44.99 0.29 1.06 16 20 C -0.18 -1.99 10.46 30.62 0.32 -1.67 16 21 C -0.17 -1.66 10.46 30.62 0.32 -1.34 16 22 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.07 3.79 6.07 -2.39 -0.01 3.77 16 24 H 0.04 1.82 7.56 -2.38 -0.02 1.80 16 25 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 26 H 0.41 14.80 6.85 -92.71 -0.64 14.16 16 27 H 0.11 2.67 8.14 -2.38 -0.02 2.65 16 28 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 29 H 0.42 4.47 8.83 -92.71 -0.82 3.65 16 30 H 0.12 2.41 7.40 -2.38 -0.02 2.39 16 31 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.11 0.91 8.14 -2.39 -0.02 0.90 16 34 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -71.62 294.50 0.90 -70.72 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -0.33 Total: 19.26 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 4.04 Total: 7.04 kcal Atomic # 7 Polarization: -90.57 SS G_CDS: -4.75 Total: -95.32 kcal Atomic # 8 Polarization: -48.83 SS G_CDS: -0.09 Total: -48.92 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -71.62 0.90 -70.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596668623.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.354 kcal (2) G-P(sol) polarization free energy of solvation -71.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds