Wall clock time and date at job start Mon Mar 30 2020 04:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46517 * 2 1 4 4 C 1.50692 * 109.47077 * 119.99991 * 2 1 3 5 5 H 1.07996 * 120.00286 * 114.48492 * 4 2 1 6 6 C 1.37884 * 119.99856 * 294.48023 * 4 2 1 7 7 N 1.31516 * 119.99818 * 164.81394 * 6 4 2 8 8 Si 1.86796 * 120.00222 * 344.81481 * 6 4 2 9 9 H 1.48507 * 109.46866 * 270.00036 * 8 6 4 10 10 H 1.48504 * 109.46984 * 29.99538 * 8 6 4 11 11 H 1.48498 * 109.47230 * 149.99749 * 8 6 4 12 12 C 1.50702 * 109.47075 * 239.99890 * 2 1 3 13 13 O 1.21277 * 120.00153 * 239.99292 * 12 2 1 14 14 N 1.34777 * 119.99697 * 60.00314 * 12 2 1 15 15 C 1.46503 * 119.99778 * 179.97438 * 14 12 2 16 16 H 1.09001 * 110.85811 * 31.20290 * 15 14 12 17 17 C 1.54634 * 110.96525 * 267.37732 * 15 14 12 18 18 C 1.51289 * 104.19150 * 217.08047 * 17 15 14 19 19 O 1.21279 * 124.93901 * 196.25097 * 18 17 15 20 20 N 1.34414 * 110.11404 * 16.25282 * 18 17 15 21 21 C 1.46507 * 124.34814 * 180.38173 * 20 18 17 22 22 C 1.46760 * 111.30376 * 0.40520 * 20 18 17 23 23 H 1.09002 * 109.47128 * 53.52001 * 1 2 3 24 24 H 1.09001 * 109.47164 * 173.51278 * 1 2 3 25 25 H 1.08994 * 109.47265 * 293.51250 * 1 2 3 26 26 H 0.97005 * 120.00141 * 354.90057 * 7 6 4 27 27 H 0.96997 * 120.00472 * 359.97438 * 14 12 2 28 28 H 1.08996 * 110.48545 * 335.75816 * 17 15 14 29 29 H 1.08999 * 110.48530 * 98.40793 * 17 15 14 30 30 H 1.08991 * 109.47262 * 270.02850 * 21 20 18 31 31 H 1.08999 * 109.46728 * 30.03053 * 21 20 18 32 32 H 1.08996 * 109.47167 * 150.02215 * 21 20 18 33 33 H 1.09000 * 110.24709 * 223.97749 * 22 20 18 34 34 H 1.09001 * 110.24412 * 101.98423 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5778 -1.6374 1.1339 6 6 1.7956 -0.1766 2.4795 7 7 1.9587 -0.9184 3.5532 8 14 1.2432 1.5999 2.6468 9 1 2.4338 2.4789 2.7700 10 1 0.4618 1.9905 1.4458 11 1 0.3950 1.7427 3.8573 12 6 2.0323 -0.7104 -1.2305 13 8 2.7297 -1.6964 -1.1192 14 7 1.7068 -0.2499 -2.4546 15 6 2.1955 -0.9402 -3.6507 16 1 2.3051 -2.0086 -3.4647 17 6 3.5264 -0.3236 -4.1404 18 6 3.4282 -0.3795 -5.6490 19 8 4.3636 -0.2559 -6.4110 20 7 2.1535 -0.5860 -6.0219 21 6 1.7073 -0.7005 -7.4127 22 6 1.2660 -0.6816 -4.8570 23 1 -0.3633 0.6110 -0.8263 24 1 -0.3633 -1.0211 -0.1161 25 1 -0.3633 0.4100 0.9423 26 1 2.1734 -1.8602 3.4641 27 1 1.1488 0.5385 -2.5436 28 1 3.6160 0.7085 -3.8018 29 1 4.3724 -0.9156 -3.7910 30 1 1.4425 0.2865 -7.7917 31 1 2.5108 -1.1190 -8.0187 32 1 0.8366 -1.3543 -7.4623 33 1 0.5690 -1.5104 -4.9808 34 1 0.7214 0.2527 -4.7201 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597053591.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:29 Heat of formation + Delta-G solvation = -70.713777 kcal Electronic energy + Delta-G solvation = -17261.758902 eV Core-core repulsion = 14387.638170 eV Total energy + Delta-G solvation = -2874.120732 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.65921 -38.89405 -36.60786 -34.28050 -33.86591 -31.70068 -30.59698 -27.67908 -26.49006 -24.87794 -23.09905 -21.27030 -19.99552 -19.37104 -17.45608 -16.91829 -16.78518 -16.10056 -15.59696 -14.99896 -14.40683 -14.00593 -13.85588 -13.60564 -13.33499 -13.16697 -12.74409 -12.60356 -12.55277 -11.90974 -11.79483 -11.54690 -11.32009 -11.10675 -10.60528 -10.29736 -10.09396 -9.71307 -8.99323 -8.90781 -8.79694 -8.76664 -8.30701 -6.46503 -4.06983 2.44623 2.73634 3.33502 3.38514 3.43292 3.50370 3.54753 4.23829 4.40234 4.47607 4.78782 4.82903 5.03152 5.12869 5.22574 5.25824 5.39530 5.43526 5.62634 5.82730 5.98609 6.12473 6.23451 6.34564 6.45108 6.73461 6.82601 6.86201 7.16283 7.70318 7.99232 8.13674 8.45474 8.97624 9.00770 9.62437 10.94033 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.046709 B = 0.005217 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.312420 B = 5365.896924 C = 5487.761799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.003 3.997 3 H 0.047 0.953 4 C -0.590 4.590 5 H 0.075 0.925 6 C 0.031 3.969 7 N -0.905 5.905 8 Si 1.041 2.959 9 H -0.286 1.286 10 H -0.272 1.272 11 H -0.285 1.285 12 C 0.530 3.470 13 O -0.530 6.530 14 N -0.738 5.738 15 C 0.137 3.863 16 H 0.110 0.890 17 C -0.169 4.169 18 C 0.522 3.478 19 O -0.534 6.534 20 N -0.625 5.625 21 C 0.096 3.904 22 C 0.098 3.902 23 H 0.027 0.973 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.270 0.730 27 H 0.398 0.602 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.784 3.834 -17.788 19.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.019 4.019 3 H 0.065 0.935 4 C -0.628 4.628 5 H 0.093 0.907 6 C -0.174 4.174 7 N -0.539 5.539 8 Si 0.869 3.131 9 H -0.213 1.213 10 H -0.197 1.197 11 H -0.211 1.211 12 C 0.319 3.681 13 O -0.404 6.404 14 N -0.393 5.393 15 C 0.030 3.970 16 H 0.128 0.872 17 C -0.211 4.211 18 C 0.310 3.690 19 O -0.410 6.410 20 N -0.360 5.360 21 C -0.046 4.046 22 C -0.026 4.026 23 H 0.046 0.954 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.233 0.767 28 H 0.128 0.872 29 H 0.126 0.874 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.157 4.311 -17.035 18.314 hybrid contribution -0.003 -0.798 -1.208 1.448 sum -5.160 3.513 -18.243 19.282 Atomic orbital electron populations 1.22141 0.96996 1.00290 1.00216 1.19254 0.93611 0.97040 0.92007 0.93512 1.21963 1.39783 1.11492 0.89554 0.90696 1.25755 0.94493 1.05257 0.91919 1.70772 1.43974 1.08497 1.30671 0.84152 0.77170 0.75756 0.75988 1.21279 1.19727 1.21132 1.21572 0.78502 0.84231 0.83830 1.90578 1.36993 1.26405 1.86383 1.46277 1.55601 1.32525 1.04945 1.21601 0.91418 0.99251 0.84760 0.87210 1.22885 1.01101 1.04918 0.92171 1.20960 0.82083 0.74804 0.91185 1.90710 1.40556 1.50426 1.59336 1.48172 1.08598 1.72558 1.06722 1.21544 1.00732 1.01638 0.80642 1.22356 0.92990 1.02823 0.84399 0.95415 0.93383 0.92183 0.91963 0.76724 0.87236 0.87387 0.92596 0.90671 0.90956 0.89529 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 8.32 37.16 0.31 -2.34 16 2 C 0.00 0.06 2.19 -92.93 -0.20 -0.14 16 3 H 0.05 0.99 6.78 -51.93 -0.35 0.63 16 4 C -0.59 -16.46 8.65 -34.44 -0.30 -16.76 16 5 H 0.07 2.39 7.02 -52.49 -0.37 2.02 16 6 C 0.03 0.86 5.33 -17.82 -0.09 0.77 16 7 N -0.91 -27.63 13.70 55.43 0.76 -26.87 16 8 Si 1.04 23.66 26.17 -169.99 -4.45 19.21 16 9 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.27 -5.34 5.54 56.52 0.31 -5.03 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.53 10.76 7.15 -10.98 -0.08 10.68 16 13 O -0.53 -13.01 15.11 5.56 0.08 -12.92 16 14 N -0.74 -10.45 5.06 -52.22 -0.26 -10.72 16 15 C 0.14 1.69 3.53 -66.30 -0.23 1.46 16 16 H 0.11 1.55 7.54 -51.93 -0.39 1.16 16 17 C -0.17 -2.18 6.59 -26.74 -0.18 -2.36 16 18 C 0.52 7.10 8.02 -10.86 -0.09 7.01 16 19 O -0.53 -9.18 17.60 5.56 0.10 -9.08 16 20 N -0.62 -6.55 3.33 -180.29 -0.60 -7.15 16 21 C 0.10 0.76 10.96 59.85 0.66 1.42 16 22 C 0.10 0.87 7.08 -3.13 -0.02 0.85 16 23 H 0.03 0.40 7.75 -51.93 -0.40 0.00 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.06 1.20 5.06 -51.93 -0.26 0.94 16 26 H 0.27 8.33 8.73 -40.82 -0.36 7.97 16 27 H 0.40 4.44 7.98 -40.82 -0.33 4.12 16 28 H 0.11 1.34 8.08 -51.93 -0.42 0.92 16 29 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.66 7.93 -51.93 -0.41 0.25 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.56 7.80 -51.93 -0.40 0.16 16 LS Contribution 283.88 15.07 4.28 4.28 Total: -1.00 -34.87 283.88 -5.02 -39.89 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -4.69 Total: 2.77 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -0.23 Total: 0.58 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -0.11 Total: -44.73 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: 0.18 Total: -22.01 kcal Atomic # 14 Polarization: 23.66 SS G_CDS: -4.45 Total: 19.21 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -34.87 -5.02 -39.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597053591.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.828 kcal (2) G-P(sol) polarization free energy of solvation -34.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds