Wall clock time and date at job start Mon Mar 30 2020 04:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47023 * 2 1 4 4 C 1.50698 * 109.46876 * 119.99694 * 2 1 3 5 5 H 1.08003 * 119.99664 * 120.00284 * 4 2 1 6 6 C 1.37872 * 120.00263 * 299.99920 * 4 2 1 7 7 N 1.31516 * 120.00335 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 119.99925 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47274 * 89.99827 * 8 6 4 10 10 H 1.48505 * 109.47039 * 209.99947 * 8 6 4 11 11 H 1.48496 * 109.47291 * 329.99767 * 8 6 4 12 12 C 1.50695 * 109.47325 * 239.99879 * 2 1 3 13 13 O 1.21283 * 119.99915 * 263.32876 * 12 2 1 14 14 N 1.34779 * 120.00264 * 83.32461 * 12 2 1 15 15 C 1.47270 * 121.35218 * 4.13807 * 14 12 2 16 16 C 1.52990 * 108.18821 * 118.51510 * 15 14 12 17 17 N 1.45645 * 110.76916 * 46.72664 * 16 15 14 18 18 C 1.33370 * 124.59516 * 338.09915 * 17 16 15 19 19 O 1.21283 * 118.49301 * 184.30034 * 18 17 16 20 20 C 1.47049 * 121.35604 * 184.16024 * 14 12 2 21 21 H 1.09000 * 109.66746 * 102.83669 * 20 14 12 22 22 C 1.53005 * 109.56761 * 342.53723 * 20 14 12 23 23 H 1.09002 * 109.47226 * 185.35565 * 1 2 3 24 24 H 1.09004 * 109.47126 * 305.36121 * 1 2 3 25 25 H 1.09000 * 109.46759 * 65.35874 * 1 2 3 26 26 H 0.96998 * 120.00096 * 180.02562 * 7 6 4 27 27 H 1.08998 * 109.71705 * 358.84434 * 15 14 12 28 28 H 1.08997 * 109.71981 * 238.19431 * 15 14 12 29 29 H 1.08998 * 109.21615 * 286.39087 * 16 15 14 30 30 H 1.09005 * 109.18022 * 167.03589 * 16 15 14 31 31 H 0.97007 * 117.70311 * 158.12265 * 17 16 15 32 32 H 1.08998 * 109.47344 * 309.01387 * 22 20 14 33 33 H 1.08997 * 109.46948 * 189.00818 * 22 20 14 34 34 H 1.08998 * 109.46889 * 69.01080 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1379 -0.8589 3.5566 8 14 0.6247 1.2791 2.6540 9 1 -0.8029 0.8728 2.6997 10 1 0.9759 1.9952 3.9067 11 1 0.8470 2.1765 1.4920 12 6 2.0324 -0.7104 -1.2304 13 8 2.3496 -1.8794 -1.1686 14 7 2.1291 -0.0468 -2.3995 15 6 1.8382 1.3941 -2.4890 16 6 3.1102 2.1106 -2.9466 17 7 3.7129 1.4203 -4.0786 18 6 3.5019 0.1393 -4.3841 19 8 4.1227 -0.3454 -5.3064 20 6 2.5289 -0.7321 -3.6375 21 1 1.6505 -0.9124 -4.2572 22 6 3.1954 -2.0656 -3.2928 23 1 -0.3634 -1.0232 0.0959 24 1 -0.3633 0.5948 0.8381 25 1 -0.3633 0.4285 -0.9341 26 1 1.9033 -0.5277 4.4375 27 1 1.5361 1.7697 -1.5114 28 1 1.0401 1.5640 -3.2116 29 1 3.8228 2.1381 -2.1223 30 1 2.8610 3.1305 -3.2396 31 1 4.3101 1.9278 -4.6504 32 1 3.9779 -1.9000 -2.5523 33 1 3.6326 -2.4967 -4.1934 34 1 2.4503 -2.7499 -2.8872 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597097852.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:26 Heat of formation + Delta-G solvation = -75.633127 kcal Electronic energy + Delta-G solvation = -18180.260075 eV Core-core repulsion = 15305.926024 eV Total energy + Delta-G solvation = -2874.334051 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.97896 -40.21458 -37.53272 -36.01316 -35.28002 -33.66862 -32.03502 -29.50761 -27.15205 -26.53049 -24.51250 -24.04599 -21.15318 -19.72938 -18.89555 -18.31010 -18.21706 -17.11253 -16.89229 -16.66910 -16.12336 -15.82189 -15.11051 -14.94028 -14.58021 -14.19039 -14.11637 -13.75630 -13.42614 -13.14831 -13.09556 -12.86153 -12.66856 -12.52956 -12.41505 -12.06852 -11.43375 -11.39881 -11.18992 -10.73875 -10.18059 -9.98418 -9.63777 -8.24922 -6.33502 1.37201 1.40375 1.43222 1.55247 1.79999 1.81712 2.24889 2.37755 3.09283 3.39215 3.69576 3.90552 4.05309 4.10882 4.20620 4.35809 4.43716 4.64084 4.70071 4.72058 4.80094 4.85189 4.95646 4.97375 5.18022 5.44239 5.49570 5.55677 5.77564 6.13426 6.22177 6.47671 6.79604 7.05403 7.27095 7.42051 8.92959 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.035347 B = 0.007816 C = 0.007059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.957504 B = 3581.537067 C = 3965.647478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.002 4.002 3 H 0.077 0.923 4 C -0.520 4.520 5 H 0.022 0.978 6 C 0.005 3.995 7 N -0.955 5.955 8 Si 0.958 3.042 9 H -0.266 1.266 10 H -0.302 1.302 11 H -0.214 1.214 12 C 0.532 3.468 13 O -0.565 6.565 14 N -0.622 5.622 15 C 0.077 3.923 16 C 0.091 3.909 17 N -0.704 5.704 18 C 0.516 3.484 19 O -0.586 6.586 20 C 0.133 3.867 21 H 0.123 0.877 22 C -0.121 4.121 23 H 0.039 0.961 24 H 0.051 0.949 25 H 0.085 0.915 26 H 0.267 0.733 27 H 0.121 0.879 28 H 0.113 0.887 29 H 0.066 0.934 30 H 0.140 0.860 31 H 0.409 0.591 32 H 0.033 0.967 33 H 0.063 0.937 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.245 13.076 -14.679 20.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.023 4.023 3 H 0.094 0.906 4 C -0.558 4.558 5 H 0.040 0.960 6 C -0.192 4.192 7 N -0.595 5.595 8 Si 0.782 3.218 9 H -0.192 1.192 10 H -0.230 1.230 11 H -0.136 1.136 12 C 0.323 3.677 13 O -0.443 6.443 14 N -0.359 5.359 15 C -0.044 4.044 16 C -0.033 4.033 17 N -0.355 5.355 18 C 0.302 3.698 19 O -0.466 6.466 20 C 0.027 3.973 21 H 0.141 0.859 22 C -0.179 4.179 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.104 0.896 26 H 0.075 0.925 27 H 0.139 0.861 28 H 0.131 0.869 29 H 0.085 0.915 30 H 0.158 0.842 31 H 0.246 0.754 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.897 12.080 -14.779 19.481 hybrid contribution 0.265 -0.015 0.679 0.729 sum -3.632 12.065 -14.099 18.909 Atomic orbital electron populations 1.21999 0.94434 1.01459 1.01762 1.19294 0.95236 0.97664 0.90120 0.90569 1.21047 1.31760 1.12488 0.90491 0.95974 1.26077 0.97409 1.00973 0.94697 1.70090 1.47661 1.42943 0.98806 0.85744 0.78450 0.79036 0.78582 1.19194 1.22982 1.13646 1.21189 0.75547 0.86760 0.84196 1.90622 1.49506 1.19208 1.84948 1.48461 1.69562 1.11060 1.06836 1.22591 0.98034 0.77781 1.06044 1.22069 0.94954 0.97990 0.88294 1.45303 1.48825 1.10319 1.31003 1.20390 0.82731 0.83254 0.83442 1.90732 1.50043 1.72975 1.32874 1.21323 0.97252 0.92716 0.85995 0.85922 1.21861 1.00971 0.95100 0.99935 0.94177 0.93051 0.89647 0.92460 0.86141 0.86889 0.91533 0.84188 0.75426 0.94787 0.91836 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.96 8.48 71.98 0.61 -4.35 16 2 C 0.00 -0.07 1.40 -12.29 -0.02 -0.09 16 3 H 0.08 2.75 5.40 -2.39 -0.01 2.73 16 4 C -0.52 -29.71 8.92 25.60 0.23 -29.48 16 5 H 0.02 1.51 7.24 -2.91 -0.02 1.49 16 6 C 0.00 0.27 5.45 84.65 0.46 0.73 16 7 N -0.96 -60.01 13.96 21.45 0.30 -59.71 16 8 Si 0.96 40.09 24.32 68.60 1.67 41.76 16 9 H -0.27 -10.63 6.92 99.48 0.69 -9.94 16 10 H -0.30 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.21 -7.09 6.53 99.48 0.65 -6.44 16 12 C 0.53 21.75 6.68 87.66 0.59 22.34 16 13 O -0.57 -28.43 11.66 -3.04 -0.04 -28.46 16 14 N -0.62 -18.26 2.98 -799.21 -2.38 -20.64 16 15 C 0.08 1.36 6.23 86.23 0.54 1.89 16 16 C 0.09 1.27 7.34 86.54 0.63 1.91 16 17 N -0.70 -13.53 5.42 -467.10 -2.53 -16.06 16 18 C 0.52 14.28 7.35 87.79 0.65 14.92 16 19 O -0.59 -20.13 17.03 -3.04 -0.05 -20.18 16 20 C 0.13 3.87 3.68 44.06 0.16 4.03 16 21 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 22 C -0.12 -4.31 7.57 71.98 0.55 -3.76 16 23 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.05 1.81 3.43 -2.39 -0.01 1.80 16 25 H 0.08 2.18 7.96 -2.39 -0.02 2.16 16 26 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 27 H 0.12 2.04 5.46 -2.39 -0.01 2.03 16 28 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.14 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.41 6.36 8.80 -92.70 -0.82 5.54 16 32 H 0.03 1.39 7.25 -2.39 -0.02 1.38 16 33 H 0.06 2.10 7.61 -2.39 -0.02 2.08 16 34 H 0.07 2.91 6.48 -2.39 -0.02 2.90 16 Total: -1.00 -81.00 267.63 1.60 -79.40 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.24 Total: 15.76 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 4.39 Total: 8.14 kcal Atomic # 7 Polarization: -91.80 SS G_CDS: -4.61 Total: -96.41 kcal Atomic # 8 Polarization: -48.56 SS G_CDS: -0.09 Total: -48.65 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 1.67 Total: 41.76 kcal Total: -81.00 1.60 -79.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597097852.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.764 kcal (2) G-P(sol) polarization free energy of solvation -80.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds