Wall clock time and date at job start Mon Mar 30 2020 04:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47364 * 2 1 4 4 C 1.50702 * 109.46635 * 119.99862 * 2 1 3 5 5 H 1.08009 * 119.99934 * 119.99720 * 4 2 1 6 6 C 1.37875 * 120.00139 * 300.00291 * 4 2 1 7 7 N 1.31509 * 120.00299 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00137 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47435 * 59.99194 * 8 6 4 10 10 H 1.48493 * 109.47139 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46604 * 299.99512 * 8 6 4 12 12 C 1.50699 * 109.47212 * 239.99327 * 2 1 3 13 13 O 1.21280 * 120.00514 * 253.45887 * 12 2 1 14 14 N 1.34784 * 119.99516 * 73.46762 * 12 2 1 15 15 C 1.47263 * 121.35389 * 5.38341 * 14 12 2 16 16 C 1.53466 * 107.93125 * 118.51820 * 15 14 12 17 17 N 1.45641 * 110.73912 * 46.91217 * 16 15 14 18 18 C 1.33383 * 124.59040 * 337.98029 * 17 16 15 19 19 O 1.21286 * 118.48457 * 184.33979 * 18 17 16 20 20 C 1.47053 * 121.35161 * 185.67672 * 14 12 2 21 21 H 1.09002 * 109.56163 * 342.53016 * 20 14 12 22 22 C 1.52997 * 109.56933 * 102.88834 * 20 14 12 23 23 H 1.09005 * 109.46463 * 56.57054 * 1 2 3 24 24 H 1.09000 * 109.47390 * 176.56875 * 1 2 3 25 25 H 1.08997 * 109.47565 * 296.57003 * 1 2 3 26 26 H 0.96994 * 120.00635 * 180.02562 * 7 6 4 27 27 H 1.08999 * 109.72164 * 238.19646 * 15 14 12 28 28 H 1.09004 * 109.72335 * 358.85275 * 15 14 12 29 29 H 1.09001 * 109.32754 * 286.52502 * 16 15 14 30 30 H 1.09003 * 109.13760 * 167.17801 * 16 15 14 31 31 H 0.97003 * 117.70335 * 157.95992 * 17 16 15 32 32 H 1.08993 * 109.47118 * 59.99768 * 22 20 14 33 33 H 1.08995 * 109.46860 * 180.02562 * 22 20 14 34 34 H 1.09008 * 109.47029 * 299.99894 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6990 -0.2394 2.4828 7 7 0.9434 0.8301 2.6034 8 14 2.3222 -1.1196 4.0081 9 1 3.8071 -1.1192 4.0080 10 1 1.8275 -0.4193 5.2205 11 1 1.8276 -2.5198 4.0082 12 6 2.0324 -0.7105 -1.2304 13 8 2.5164 -1.8185 -1.1357 14 7 1.9438 -0.1146 -2.4360 15 6 1.4707 1.2734 -2.5718 16 6 2.6071 2.1020 -3.1860 17 7 3.1838 1.4155 -4.3338 18 6 3.1005 0.1021 -4.5509 19 8 3.6900 -0.3655 -5.5022 20 6 2.3097 -0.8260 -3.6699 21 1 2.9145 -1.6984 -3.4225 22 6 1.0410 -1.2696 -4.4010 23 1 -0.3632 0.5662 -0.8577 24 1 -0.3634 -1.0258 -0.0615 25 1 -0.3634 0.4596 0.9191 26 1 0.7093 1.1618 3.4843 27 1 0.5975 1.3023 -3.2236 28 1 1.2114 1.6713 -1.5906 29 1 3.3825 2.2621 -2.4368 30 1 2.2134 3.0669 -3.5056 31 1 3.6616 1.9511 -4.9862 32 1 0.4412 -0.3946 -4.6514 33 1 1.3140 -1.7970 -5.3150 34 1 0.4640 -1.9336 -3.7573 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597097855.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:33 Heat of formation + Delta-G solvation = -94.189517 kcal Electronic energy + Delta-G solvation = -18012.372897 eV Core-core repulsion = 15137.234181 eV Total energy + Delta-G solvation = -2875.138717 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.87326 -40.15480 -37.56057 -35.88431 -35.40571 -33.22046 -31.63015 -29.64206 -27.22772 -26.08821 -24.68198 -24.14612 -21.07993 -19.57570 -18.61817 -18.32503 -18.03898 -17.26905 -16.87561 -16.47995 -15.96620 -15.73935 -15.04302 -14.89546 -14.68399 -14.12847 -13.70322 -13.54900 -13.23163 -13.13489 -12.96318 -12.73466 -12.55912 -12.55256 -12.45289 -12.22965 -12.01563 -11.34998 -11.04158 -10.60154 -10.28974 -10.19332 -9.67700 -8.14874 -6.24306 1.38619 1.42247 1.42933 1.51254 1.80374 1.87204 2.22537 2.45743 3.14982 3.37063 3.75307 3.95153 4.03344 4.16336 4.26654 4.42117 4.63735 4.72290 4.75063 4.79060 4.91627 4.98822 5.05188 5.10826 5.37169 5.48259 5.74357 5.77226 5.94784 6.12428 6.20440 6.50014 6.81678 7.03328 7.35037 7.45563 8.90150 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.038137 B = 0.006733 C = 0.006492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.020925 B = 4157.466682 C = 4312.152418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.034 3.966 3 H 0.054 0.946 4 C -0.534 4.534 5 H 0.042 0.958 6 C 0.028 3.972 7 N -0.904 5.904 8 Si 0.948 3.052 9 H -0.278 1.278 10 H -0.272 1.272 11 H -0.280 1.280 12 C 0.527 3.473 13 O -0.586 6.586 14 N -0.619 5.619 15 C 0.081 3.919 16 C 0.095 3.905 17 N -0.701 5.701 18 C 0.523 3.477 19 O -0.588 6.588 20 C 0.121 3.879 21 H 0.093 0.907 22 C -0.140 4.140 23 H 0.058 0.942 24 H 0.016 0.984 25 H 0.075 0.925 26 H 0.266 0.734 27 H 0.106 0.894 28 H 0.115 0.885 29 H 0.068 0.932 30 H 0.139 0.861 31 H 0.410 0.590 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.503 7.431 -11.482 13.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.013 3.987 3 H 0.071 0.929 4 C -0.572 4.572 5 H 0.060 0.940 6 C -0.172 4.172 7 N -0.543 5.543 8 Si 0.774 3.226 9 H -0.204 1.204 10 H -0.197 1.197 11 H -0.206 1.206 12 C 0.318 3.682 13 O -0.465 6.465 14 N -0.355 5.355 15 C -0.041 4.041 16 C -0.029 4.029 17 N -0.352 5.352 18 C 0.309 3.691 19 O -0.469 6.469 20 C 0.014 3.986 21 H 0.111 0.889 22 C -0.198 4.198 23 H 0.077 0.923 24 H 0.035 0.965 25 H 0.094 0.906 26 H 0.076 0.924 27 H 0.124 0.876 28 H 0.133 0.867 29 H 0.086 0.914 30 H 0.157 0.843 31 H 0.247 0.753 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.148 6.618 -11.575 13.505 hybrid contribution 0.700 -0.542 0.842 1.221 sum -1.448 6.076 -10.733 12.418 Atomic orbital electron populations 1.21594 0.94704 0.99086 1.02467 1.18782 0.95314 0.96224 0.88384 0.92867 1.21247 1.31916 1.12691 0.91373 0.93979 1.25450 0.95141 0.95694 1.00952 1.69881 1.36799 1.23180 1.24458 0.85770 0.78652 0.78766 0.79389 1.20366 1.19703 1.20620 1.21845 0.75668 0.85675 0.84962 1.90523 1.46341 1.23125 1.86484 1.48519 1.67128 1.15255 1.04616 1.22590 0.97372 0.79366 1.04762 1.22111 0.96302 0.96995 0.87539 1.45280 1.56122 1.06878 1.26917 1.20210 0.80245 0.83926 0.84755 1.90732 1.47433 1.75896 1.32859 1.21215 0.98052 0.95129 0.84203 0.88874 1.21921 0.94732 1.02800 1.00381 0.92332 0.96487 0.90619 0.92434 0.87625 0.86695 0.91404 0.84329 0.75293 0.89820 0.90154 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.13 8.75 71.98 0.63 -4.50 16 2 C 0.03 1.60 1.78 -12.29 -0.02 1.57 16 3 H 0.05 2.45 6.88 -2.39 -0.02 2.43 16 4 C -0.53 -29.96 8.36 25.60 0.21 -29.75 16 5 H 0.04 2.57 6.84 -2.91 -0.02 2.55 16 6 C 0.03 1.48 5.30 84.65 0.45 1.93 16 7 N -0.90 -47.99 11.30 21.45 0.24 -47.74 16 8 Si 0.95 43.79 29.54 68.60 2.03 45.81 16 9 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 12 C 0.53 23.45 6.93 87.66 0.61 24.06 16 13 O -0.59 -31.27 15.11 -3.03 -0.05 -31.32 16 14 N -0.62 -20.37 2.62 -798.31 -2.09 -22.46 16 15 C 0.08 1.80 5.54 86.39 0.48 2.28 16 16 C 0.09 1.60 7.35 86.70 0.64 2.24 16 17 N -0.70 -14.80 5.42 -466.30 -2.53 -17.32 16 18 C 0.52 15.45 7.10 87.79 0.62 16.07 16 19 O -0.59 -21.12 17.80 -3.05 -0.05 -21.17 16 20 C 0.12 3.83 3.09 44.05 0.14 3.97 16 21 H 0.09 3.59 7.19 -2.39 -0.02 3.57 16 22 C -0.14 -3.53 9.38 71.98 0.67 -2.86 16 23 H 0.06 1.94 6.68 -2.38 -0.02 1.92 16 24 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.08 3.57 5.99 -2.39 -0.01 3.56 16 26 H 0.27 13.44 8.31 -92.71 -0.77 12.67 16 27 H 0.11 1.74 7.49 -2.39 -0.02 1.73 16 28 H 0.12 2.75 5.00 -2.38 -0.01 2.73 16 29 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.41 6.93 8.80 -92.71 -0.82 6.11 16 32 H 0.08 1.68 7.49 -2.39 -0.02 1.66 16 33 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 Total: -1.00 -71.46 278.03 2.28 -69.18 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.31 Total: 10.01 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: 4.43 Total: 15.02 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -4.37 Total: -87.53 kcal Atomic # 8 Polarization: -52.39 SS G_CDS: -0.10 Total: -52.49 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -71.46 2.28 -69.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597097855.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.012 kcal (2) G-P(sol) polarization free energy of solvation -71.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds