Wall clock time and date at job start Mon Mar 30 2020 04:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 H 1.07996 * 119.99751 * 120.00006 * 4 2 1 6 6 C 1.37877 * 120.00001 * 300.00469 * 4 2 1 7 7 N 1.31512 * 119.99923 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 120.00006 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47093 * 90.00088 * 8 6 4 10 10 H 1.48500 * 109.47049 * 210.00797 * 8 6 4 11 11 H 1.48504 * 109.47189 * 330.00185 * 8 6 4 12 12 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 13 13 O 1.21280 * 119.99781 * 240.00479 * 12 2 1 14 14 N 1.34780 * 119.99795 * 59.99803 * 12 2 1 15 15 C 1.46497 * 119.99566 * 180.02562 * 14 12 2 16 16 H 1.09001 * 110.44120 * 327.54565 * 15 14 12 17 17 C 1.54627 * 110.48379 * 205.00181 * 15 14 12 18 18 C 1.54483 * 101.76559 * 216.52646 * 17 15 14 19 19 N 1.46758 * 105.47447 * 25.41644 * 18 17 15 20 20 C 1.46498 * 124.35174 * 162.98464 * 19 18 17 21 21 C 1.34427 * 111.29858 * 342.98408 * 19 18 17 22 22 O 1.21289 * 124.93896 * 180.44155 * 21 19 18 23 23 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 0.97000 * 119.99684 * 180.02562 * 7 6 4 27 27 H 0.96995 * 120.00011 * 0.02562 * 14 12 2 28 28 H 1.08998 * 110.97267 * 334.64463 * 17 15 14 29 29 H 1.09001 * 110.97049 * 98.41352 * 17 15 14 30 30 H 1.08999 * 110.24899 * 144.41707 * 18 17 15 31 31 H 1.09002 * 110.24419 * 266.41710 * 18 17 15 32 32 H 1.08997 * 109.47285 * 89.99887 * 20 19 18 33 33 H 1.09008 * 109.47158 * 209.99894 * 20 19 18 34 34 H 1.08992 * 109.47242 * 329.99924 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 2.1379 -0.8590 3.5566 8 14 0.6257 1.2798 2.6541 9 1 -0.8022 0.8744 2.6992 10 1 0.9770 1.9954 3.9070 11 1 0.8490 2.1773 1.4923 12 6 2.0324 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4546 15 6 2.1948 -0.9409 -3.6507 16 1 3.1753 -1.3788 -3.4639 17 6 2.2564 0.0324 -4.8506 18 6 1.8374 -0.8841 -6.0215 19 7 1.0258 -1.9464 -5.4161 20 6 0.1289 -2.8300 -6.1652 21 6 1.2111 -2.0046 -4.0859 22 8 0.6690 -2.7953 -3.3430 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.9032 -0.5279 4.4375 27 1 1.1494 0.5388 -2.5436 28 1 1.5492 0.8522 -4.7246 29 1 3.2684 0.4108 -4.9943 30 1 1.2461 -0.3241 -6.7459 31 1 2.7188 -1.3098 -6.5012 32 1 0.6768 -3.7154 -6.4874 33 1 -0.7026 -3.1295 -5.5270 34 1 -0.2550 -2.3025 -7.0383 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597280321.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:16 Heat of formation + Delta-G solvation = -58.367115 kcal Electronic energy + Delta-G solvation = -17588.667435 eV Core-core repulsion = 14715.082095 eV Total energy + Delta-G solvation = -2873.585341 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.59601 -38.52339 -36.36116 -34.35314 -33.75952 -31.66485 -30.76395 -27.25320 -26.43916 -25.06701 -22.94598 -21.84241 -19.75244 -19.29013 -16.95610 -16.91596 -16.54243 -15.98389 -15.43772 -14.92039 -14.34829 -14.16015 -13.82672 -13.49321 -13.11470 -12.92829 -12.60754 -12.52785 -12.27589 -12.24351 -12.15716 -11.54659 -11.22962 -10.92735 -10.56458 -10.25205 -10.05047 -9.58492 -9.03792 -8.83967 -8.66470 -8.52442 -8.48744 -5.99065 -3.98853 2.60325 2.88395 3.28213 3.33994 3.40083 3.62046 3.75026 4.29694 4.38285 4.42948 4.71719 4.78046 5.08479 5.17214 5.24834 5.30417 5.42164 5.54590 5.59688 5.69965 5.96012 6.17895 6.37725 6.40462 6.52616 6.76310 6.82628 7.03562 7.24624 7.59127 8.09411 8.26542 8.61046 9.12797 9.22414 9.59748 11.14069 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.044006 B = 0.005974 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.118115 B = 4685.528959 C = 4757.518365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.002 4.002 3 H 0.053 0.947 4 C -0.504 4.504 5 H 0.094 0.906 6 C 0.069 3.931 7 N -0.897 5.897 8 Si 0.885 3.115 9 H -0.279 1.279 10 H -0.296 1.296 11 H -0.267 1.267 12 C 0.532 3.468 13 O -0.519 6.519 14 N -0.731 5.731 15 C 0.117 3.883 16 H 0.123 0.877 17 C -0.138 4.138 18 C 0.107 3.893 19 N -0.633 5.633 20 C 0.098 3.902 21 C 0.500 3.500 22 O -0.502 6.502 23 H 0.059 0.941 24 H 0.048 0.952 25 H 0.031 0.969 26 H 0.264 0.736 27 H 0.398 0.602 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.854 5.227 -22.126 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 H 0.070 0.930 4 C -0.542 4.542 5 H 0.112 0.888 6 C -0.132 4.132 7 N -0.535 5.535 8 Si 0.715 3.285 9 H -0.206 1.206 10 H -0.224 1.224 11 H -0.193 1.193 12 C 0.321 3.679 13 O -0.391 6.391 14 N -0.387 5.387 15 C 0.007 3.993 16 H 0.140 0.860 17 C -0.177 4.177 18 C -0.016 4.016 19 N -0.370 5.370 20 C -0.044 4.044 21 C 0.285 3.715 22 O -0.374 6.374 23 H 0.078 0.922 24 H 0.067 0.933 25 H 0.050 0.950 26 H 0.074 0.926 27 H 0.232 0.768 28 H 0.106 0.894 29 H 0.117 0.883 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.665 3.983 -21.419 21.948 hybrid contribution -0.977 1.141 -0.016 1.503 sum -3.643 5.125 -21.435 22.338 Atomic orbital electron populations 1.22107 0.97285 1.01722 0.98989 1.19302 0.93230 0.97437 0.92385 0.92977 1.20951 1.31975 1.14051 0.87200 0.88841 1.24980 0.95842 0.96606 0.95749 1.69886 1.45549 1.40215 0.97826 0.86906 0.80775 0.83817 0.76973 1.20558 1.22351 1.19274 1.21330 0.78720 0.84175 0.83723 1.90591 1.36844 1.25579 1.86112 1.46078 1.55983 1.32021 1.04598 1.21422 0.98772 0.92686 0.86400 0.85960 1.22920 1.04102 0.97653 0.92979 1.22038 0.95280 0.88326 0.95991 1.48187 1.44882 1.35809 1.08169 1.21497 0.93501 0.93273 0.96125 1.21553 0.82822 0.85421 0.81690 1.90769 1.50196 1.39820 1.56618 0.92195 0.93327 0.95020 0.92615 0.76757 0.89352 0.88319 0.90278 0.90898 0.92805 0.90787 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.57 37.16 0.32 -2.82 16 2 C 0.00 -0.05 2.23 -92.92 -0.21 -0.25 16 3 H 0.05 1.19 7.20 -51.93 -0.37 0.82 16 4 C -0.50 -15.07 8.96 -34.44 -0.31 -15.38 16 5 H 0.09 3.19 7.00 -52.49 -0.37 2.82 16 6 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 7 N -0.90 -28.39 13.96 55.43 0.77 -27.61 16 8 Si 0.88 21.79 24.37 -169.99 -4.14 17.65 16 9 H -0.28 -6.69 6.87 56.52 0.39 -6.31 16 10 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.27 -6.07 6.53 56.52 0.37 -5.70 16 12 C 0.53 12.20 7.15 -10.98 -0.08 12.12 16 13 O -0.52 -14.14 15.11 5.56 0.08 -14.05 16 14 N -0.73 -12.30 5.02 -53.82 -0.27 -12.57 16 15 C 0.12 1.68 3.28 -67.95 -0.22 1.45 16 16 H 0.12 1.92 7.55 -51.93 -0.39 1.53 16 17 C -0.14 -1.12 6.87 -25.10 -0.17 -1.29 16 18 C 0.11 0.78 7.35 -3.12 -0.02 0.76 16 19 N -0.63 -7.25 3.33 -180.29 -0.60 -7.85 16 20 C 0.10 0.90 10.96 59.85 0.66 1.56 16 21 C 0.50 8.19 7.66 -10.86 -0.08 8.10 16 22 O -0.50 -10.97 17.59 5.55 0.10 -10.88 16 23 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 24 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 25 H 0.03 0.55 7.56 -51.93 -0.39 0.16 16 26 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 27 H 0.40 5.40 7.84 -40.82 -0.32 5.08 16 28 H 0.09 0.61 7.82 -51.93 -0.41 0.20 16 29 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.80 7.93 -51.92 -0.41 0.39 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 281.71 15.07 4.25 4.25 Total: -1.00 -38.66 281.71 -4.58 -43.24 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -4.55 Total: 1.61 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -0.22 Total: 6.22 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: -0.10 Total: -48.03 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: 0.18 Total: -24.93 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.14 Total: 17.65 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -38.66 -4.58 -43.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597280321.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.124 kcal (2) G-P(sol) polarization free energy of solvation -38.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds