Wall clock time and date at job start Mon Mar 30 2020 04:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 H 1.07996 * 119.99751 * 120.00006 * 4 2 1 6 6 C 1.37877 * 120.00001 * 300.00469 * 4 2 1 7 7 N 1.31512 * 119.99923 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 120.00006 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47093 * 90.00088 * 8 6 4 10 10 H 1.48500 * 109.47049 * 210.00797 * 8 6 4 11 11 H 1.48504 * 109.47189 * 330.00185 * 8 6 4 12 12 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 13 13 O 1.21280 * 119.99781 * 240.00479 * 12 2 1 14 14 N 1.34780 * 119.99795 * 59.99803 * 12 2 1 15 15 C 1.46497 * 119.99566 * 180.02562 * 14 12 2 16 16 H 1.09001 * 110.44120 * 327.54565 * 15 14 12 17 17 C 1.54627 * 110.48379 * 205.00181 * 15 14 12 18 18 C 1.54483 * 101.76559 * 216.52646 * 17 15 14 19 19 N 1.46758 * 105.47447 * 25.41644 * 18 17 15 20 20 C 1.46498 * 124.35174 * 162.98464 * 19 18 17 21 21 C 1.34427 * 111.29858 * 342.98408 * 19 18 17 22 22 O 1.21289 * 124.93896 * 180.44155 * 21 19 18 23 23 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 0.97000 * 119.99684 * 180.02562 * 7 6 4 27 27 H 0.96995 * 120.00011 * 0.02562 * 14 12 2 28 28 H 1.08998 * 110.97267 * 334.64463 * 17 15 14 29 29 H 1.09001 * 110.97049 * 98.41352 * 17 15 14 30 30 H 1.08999 * 110.24899 * 144.41707 * 18 17 15 31 31 H 1.09002 * 110.24419 * 266.41710 * 18 17 15 32 32 H 1.08997 * 109.47285 * 89.99887 * 20 19 18 33 33 H 1.09008 * 109.47158 * 209.99894 * 20 19 18 34 34 H 1.08992 * 109.47242 * 329.99924 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 2.1379 -0.8590 3.5566 8 14 0.6257 1.2798 2.6541 9 1 -0.8022 0.8744 2.6992 10 1 0.9770 1.9954 3.9070 11 1 0.8490 2.1773 1.4923 12 6 2.0324 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4546 15 6 2.1948 -0.9409 -3.6507 16 1 3.1753 -1.3788 -3.4639 17 6 2.2564 0.0324 -4.8506 18 6 1.8374 -0.8841 -6.0215 19 7 1.0258 -1.9464 -5.4161 20 6 0.1289 -2.8300 -6.1652 21 6 1.2111 -2.0046 -4.0859 22 8 0.6690 -2.7953 -3.3430 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.9032 -0.5279 4.4375 27 1 1.1494 0.5388 -2.5436 28 1 1.5492 0.8522 -4.7246 29 1 3.2684 0.4108 -4.9943 30 1 1.2461 -0.3241 -6.7459 31 1 2.7188 -1.3098 -6.5012 32 1 0.6768 -3.7154 -6.4874 33 1 -0.7026 -3.1295 -5.5270 34 1 -0.2550 -2.3025 -7.0383 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597280321.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:15 Heat of formation + Delta-G solvation = -91.672041 kcal Electronic energy + Delta-G solvation = -17590.111645 eV Core-core repulsion = 14715.082095 eV Total energy + Delta-G solvation = -2875.029551 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.76657 -40.19430 -37.55956 -35.83908 -35.69366 -33.48016 -32.12272 -28.23843 -27.42109 -27.11397 -24.64698 -22.81856 -21.34169 -20.53040 -18.84158 -18.24042 -17.84985 -17.29860 -16.98789 -16.55212 -15.89733 -15.61287 -14.92212 -14.83145 -14.70661 -14.39744 -14.07263 -13.83209 -13.45833 -13.43165 -13.12016 -12.93740 -12.78993 -12.51882 -12.16415 -11.98688 -11.47986 -11.45007 -11.23883 -10.78300 -10.51018 -9.93108 -9.72764 -8.26934 -6.35325 1.33487 1.36139 1.40241 1.52002 1.77117 2.05992 2.34981 2.44713 3.06204 3.40698 3.48019 3.98183 4.04808 4.13537 4.38498 4.39754 4.44700 4.56884 4.62378 4.72834 4.76921 4.84985 4.96138 5.01213 5.09574 5.41917 5.45742 5.51523 5.58980 6.02670 6.25556 6.64187 6.82492 7.11298 7.25702 7.48378 8.91319 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.044006 B = 0.005974 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.118115 B = 4685.528959 C = 4757.518365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.006 4.006 3 H 0.081 0.919 4 C -0.524 4.524 5 H 0.024 0.976 6 C 0.003 3.997 7 N -0.955 5.955 8 Si 0.963 3.037 9 H -0.265 1.265 10 H -0.296 1.296 11 H -0.222 1.222 12 C 0.529 3.471 13 O -0.579 6.579 14 N -0.707 5.707 15 C 0.105 3.895 16 H 0.100 0.900 17 C -0.120 4.120 18 C 0.103 3.897 19 N -0.621 5.621 20 C 0.091 3.909 21 C 0.485 3.515 22 O -0.577 6.577 23 H 0.033 0.967 24 H 0.050 0.950 25 H 0.085 0.915 26 H 0.268 0.732 27 H 0.418 0.582 28 H 0.112 0.888 29 H 0.126 0.874 30 H 0.120 0.880 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.436 9.172 -25.789 27.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.028 4.028 3 H 0.098 0.902 4 C -0.562 4.562 5 H 0.043 0.957 6 C -0.193 4.193 7 N -0.595 5.595 8 Si 0.787 3.213 9 H -0.191 1.191 10 H -0.224 1.224 11 H -0.145 1.145 12 C 0.317 3.683 13 O -0.457 6.457 14 N -0.362 5.362 15 C -0.004 4.004 16 H 0.118 0.882 17 C -0.157 4.157 18 C -0.019 4.019 19 N -0.356 5.356 20 C -0.050 4.050 21 C 0.271 3.729 22 O -0.455 6.455 23 H 0.052 0.948 24 H 0.068 0.932 25 H 0.104 0.896 26 H 0.076 0.924 27 H 0.257 0.743 28 H 0.131 0.869 29 H 0.144 0.856 30 H 0.138 0.862 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.257 7.994 -25.226 26.802 hybrid contribution -0.396 -0.209 1.001 1.096 sum -4.653 7.785 -24.225 25.867 Atomic orbital electron populations 1.22003 0.94864 1.00994 1.01623 1.19268 0.95026 0.97872 0.90588 0.90175 1.21106 1.31733 1.12787 0.90593 0.95740 1.26113 0.97467 1.01068 0.94642 1.70092 1.47676 1.42955 0.98750 0.85654 0.78367 0.78795 0.78438 1.19077 1.22411 1.14518 1.21173 0.78222 0.83382 0.85498 1.90574 1.39746 1.28188 1.87195 1.45681 1.54877 1.32001 1.03622 1.21722 0.96994 0.94216 0.87449 0.88225 1.23026 1.06679 0.96776 0.89255 1.22466 0.96147 0.87234 0.96033 1.48348 1.44291 1.36211 1.06737 1.21711 0.92618 0.94017 0.96656 1.21937 0.82655 0.85128 0.83226 1.90729 1.53222 1.42674 1.58876 0.94820 0.93177 0.89614 0.92367 0.74348 0.86945 0.85583 0.86164 0.88872 0.92267 0.93147 0.86887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.70 8.57 71.98 0.62 -5.08 16 2 C -0.01 -0.29 2.23 -12.28 -0.03 -0.31 16 3 H 0.08 3.41 7.20 -2.39 -0.02 3.39 16 4 C -0.52 -32.94 8.96 25.60 0.23 -32.71 16 5 H 0.02 1.82 7.00 -2.91 -0.02 1.80 16 6 C 0.00 0.19 5.45 84.65 0.46 0.65 16 7 N -0.95 -63.44 13.96 21.45 0.30 -63.14 16 8 Si 0.96 44.12 24.37 68.60 1.67 45.80 16 9 H -0.26 -11.52 6.87 99.48 0.68 -10.84 16 10 H -0.30 -13.54 7.11 99.48 0.71 -12.83 16 11 H -0.22 -8.56 6.53 99.48 0.65 -7.91 16 12 C 0.53 24.75 7.15 87.66 0.63 25.38 16 13 O -0.58 -33.86 15.11 -3.03 -0.05 -33.91 16 14 N -0.71 -22.70 5.02 -442.57 -2.22 -24.92 16 15 C 0.11 2.89 3.28 44.98 0.15 3.03 16 16 H 0.10 3.21 7.55 -2.39 -0.02 3.19 16 17 C -0.12 -1.36 6.87 31.65 0.22 -1.14 16 18 C 0.10 0.95 7.35 86.83 0.64 1.59 16 19 N -0.62 -12.57 3.33 -842.90 -2.81 -15.38 16 20 C 0.09 1.46 10.96 127.77 1.40 2.86 16 21 C 0.48 15.74 7.66 87.90 0.67 16.41 16 22 O -0.58 -26.49 17.59 -3.06 -0.05 -26.55 16 23 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.05 2.06 3.27 -2.39 -0.01 2.05 16 25 H 0.09 2.60 7.56 -2.39 -0.02 2.58 16 26 H 0.27 16.38 8.31 -92.71 -0.77 15.61 16 27 H 0.42 9.71 7.84 -92.71 -0.73 8.98 16 28 H 0.11 0.82 7.82 -2.39 -0.02 0.80 16 29 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.12 0.29 8.14 -2.39 -0.02 0.28 16 31 H 0.09 0.59 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.05 1.07 7.93 -2.38 -0.02 1.05 16 34 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -96.78 281.71 2.13 -94.65 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.31 Total: 12.77 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: 4.98 Total: 10.68 kcal Atomic # 7 Polarization: -98.70 SS G_CDS: -4.73 Total: -103.44 kcal Atomic # 8 Polarization: -60.36 SS G_CDS: -0.10 Total: -60.45 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.67 Total: 45.80 kcal Total: -96.78 2.13 -94.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597280321.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.978 kcal (2) G-P(sol) polarization free energy of solvation -96.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds