Wall clock time and date at job start Mon Mar 30 2020 04:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46624 * 2 1 4 4 C 1.50697 * 109.47070 * 240.00003 * 2 1 3 5 5 H 1.08002 * 119.99865 * 239.99991 * 4 2 1 6 6 C 1.37876 * 119.99925 * 60.00083 * 4 2 1 7 7 N 1.31512 * 120.00389 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99821 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47361 * 0.02562 * 8 6 4 10 10 H 1.48509 * 109.46957 * 119.99899 * 8 6 4 11 11 H 1.48497 * 109.47609 * 240.00146 * 8 6 4 12 12 C 1.50700 * 109.46986 * 119.99942 * 2 1 3 13 13 O 1.21279 * 120.00113 * 120.00322 * 12 2 1 14 14 N 1.34784 * 119.99961 * 300.00090 * 12 2 1 15 15 C 1.46494 * 119.99635 * 180.02562 * 14 12 2 16 16 H 1.09000 * 110.44113 * 36.08887 * 15 14 12 17 17 C 1.54630 * 110.48590 * 158.77559 * 15 14 12 18 18 C 1.54473 * 101.76951 * 143.47440 * 17 15 14 19 19 N 1.46762 * 105.47324 * 334.58188 * 18 17 15 20 20 C 1.46501 * 124.35097 * 196.99159 * 19 18 17 21 21 C 1.34421 * 111.30195 * 17.01512 * 19 18 17 22 22 O 1.21283 * 124.94416 * 179.55012 * 21 19 18 23 23 H 1.09005 * 109.46932 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47453 * 300.00026 * 1 2 3 25 25 H 1.08996 * 109.47248 * 60.00351 * 1 2 3 26 26 H 0.96998 * 120.00138 * 180.02562 * 7 6 4 27 27 H 0.96995 * 120.00015 * 359.72695 * 14 12 2 28 28 H 1.09006 * 110.96425 * 261.59336 * 17 15 14 29 29 H 1.08999 * 110.96922 * 25.34880 * 17 15 14 30 30 H 1.08996 * 110.24894 * 215.58483 * 18 17 15 31 31 H 1.09008 * 110.32144 * 93.62151 * 18 17 15 32 32 H 1.09006 * 109.47185 * 179.97438 * 20 19 18 33 33 H 1.08992 * 109.47378 * 300.00396 * 20 19 18 34 34 H 1.09007 * 109.47010 * 60.00492 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 3.1474 -2.2864 -3.6038 10 1 1.1677 -1.5866 -4.8165 11 1 3.1473 -0.1858 -4.8160 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6964 1.1193 14 7 1.7067 -0.2499 2.4546 15 6 2.1955 -0.9402 3.6507 16 1 3.2028 -1.3222 3.4849 17 6 2.1673 0.0077 4.8721 18 6 1.7642 -0.9563 6.0098 19 7 1.0306 -2.0471 5.3573 20 6 0.1617 -2.9950 6.0593 21 6 1.2588 -2.0652 4.0327 22 8 0.7837 -2.8672 3.2568 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7090 1.1614 -3.4844 27 1 1.1523 0.5410 2.5436 28 1 3.1523 0.4371 5.0553 29 1 1.4204 0.7906 4.7411 30 1 1.1214 -0.4457 6.7269 31 1 2.6518 -1.3445 6.5094 32 1 -0.2598 -3.7006 5.3433 33 1 0.7430 -3.5371 6.8051 34 1 -0.6452 -2.4521 6.5518 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597280322.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:19 Heat of formation + Delta-G solvation = -68.071298 kcal Electronic energy + Delta-G solvation = -17548.786407 eV Core-core repulsion = 14674.780261 eV Total energy + Delta-G solvation = -2874.006146 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.51213 -38.33354 -36.28797 -34.24549 -33.64561 -31.46284 -30.11438 -27.15095 -26.30190 -25.05102 -22.67922 -21.76486 -19.73393 -19.12777 -16.91080 -16.79142 -16.12136 -15.84047 -15.43058 -14.68565 -14.20347 -14.06229 -13.76397 -13.26236 -13.07231 -12.74549 -12.51382 -12.37031 -12.16888 -12.05701 -11.46414 -11.18858 -10.94791 -10.63554 -10.60096 -10.20773 -9.95424 -9.88746 -8.88808 -8.77061 -8.54718 -8.38507 -8.24851 -5.96634 -3.98831 2.68685 2.95799 3.37775 3.44872 3.54370 3.79328 3.88855 4.36692 4.47203 4.54168 4.78696 4.85319 5.19161 5.23230 5.27304 5.36989 5.48216 5.59973 5.66244 5.81123 6.30690 6.46738 6.69728 6.92541 6.94629 7.02821 7.12354 7.55182 7.82987 8.04718 8.19396 8.33703 8.49347 9.10776 9.31109 9.66346 11.11199 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.045771 B = 0.005676 C = 0.005538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.589514 B = 4932.088172 C = 5054.980580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.032 3.968 3 H 0.053 0.947 4 C -0.497 4.497 5 H 0.075 0.925 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.523 3.477 13 O -0.532 6.532 14 N -0.731 5.731 15 C 0.117 3.883 16 H 0.118 0.882 17 C -0.138 4.138 18 C 0.108 3.892 19 N -0.633 5.633 20 C 0.095 3.905 21 C 0.501 3.499 22 O -0.502 6.502 23 H 0.032 0.968 24 H 0.010 0.990 25 H 0.093 0.907 26 H 0.259 0.741 27 H 0.399 0.601 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.313 1.280 19.150 19.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.010 3.990 3 H 0.070 0.930 4 C -0.535 4.535 5 H 0.093 0.907 6 C -0.143 4.143 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.313 3.687 13 O -0.406 6.406 14 N -0.387 5.387 15 C 0.007 3.993 16 H 0.136 0.864 17 C -0.176 4.176 18 C -0.016 4.016 19 N -0.371 5.371 20 C -0.047 4.047 21 C 0.286 3.714 22 O -0.374 6.374 23 H 0.051 0.949 24 H 0.029 0.971 25 H 0.111 0.889 26 H 0.069 0.931 27 H 0.233 0.767 28 H 0.116 0.884 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.175 0.143 18.484 18.486 hybrid contribution -0.082 -0.040 -0.538 0.546 sum -0.257 0.103 17.946 17.948 Atomic orbital electron populations 1.21730 0.96501 0.99999 1.00686 1.18870 0.94180 0.96722 0.89181 0.92971 1.21202 1.30691 1.12666 0.88961 0.90713 1.24946 0.95184 0.95097 0.99099 1.69882 1.37367 1.23214 1.23332 0.86399 0.78611 0.79784 0.82472 1.19551 1.21083 1.21094 1.22036 0.78291 0.84188 0.84212 1.90541 1.37550 1.26164 1.86377 1.46161 1.56096 1.31882 1.04526 1.21396 0.99031 0.92168 0.86664 0.86415 1.22903 1.04076 0.97545 0.93086 1.22002 0.96452 0.87524 0.95597 1.48184 1.48110 1.32416 1.08416 1.21504 0.93294 0.92591 0.97272 1.21594 0.81879 0.86289 0.81656 1.90763 1.51794 1.40914 1.53880 0.94858 0.97121 0.88874 0.93102 0.76650 0.88387 0.89296 0.90333 0.90985 0.90025 0.92388 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.87 37.16 0.33 -2.87 16 2 C 0.03 0.82 2.64 -92.92 -0.25 0.57 16 3 H 0.05 1.36 8.14 -51.93 -0.42 0.93 16 4 C -0.50 -14.64 8.37 -34.44 -0.29 -14.93 16 5 H 0.07 2.34 6.75 -52.49 -0.35 1.99 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.81 11.32 55.43 0.63 -25.18 16 8 Si 0.90 22.49 29.54 -169.99 -5.02 17.47 16 9 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 12 C 0.52 12.55 7.10 -10.98 -0.08 12.47 16 13 O -0.53 -14.75 15.17 5.56 0.08 -14.66 16 14 N -0.73 -13.18 5.05 -53.81 -0.27 -13.45 16 15 C 0.12 1.78 3.23 -67.94 -0.22 1.56 16 16 H 0.12 1.92 7.67 -51.93 -0.40 1.52 16 17 C -0.14 -1.23 6.86 -25.10 -0.17 -1.40 16 18 C 0.11 0.86 7.35 -3.13 -0.02 0.84 16 19 N -0.63 -7.73 3.33 -180.28 -0.60 -8.33 16 20 C 0.10 0.94 11.14 59.85 0.67 1.61 16 21 C 0.50 8.62 7.66 -10.86 -0.08 8.54 16 22 O -0.50 -11.39 17.31 5.56 0.10 -11.29 16 23 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 25 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 26 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.40 6.05 7.81 -40.82 -0.32 5.73 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 0.70 7.80 -51.93 -0.40 0.30 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 32 H 0.08 0.97 7.53 -51.93 -0.39 0.58 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 288.05 15.07 4.34 4.34 Total: -1.00 -36.66 288.05 -5.62 -42.28 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -4.67 Total: 0.90 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -0.21 Total: 7.92 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: -0.24 Total: -46.96 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: 0.18 Total: -25.96 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -36.66 -5.62 -42.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597280322.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.789 kcal (2) G-P(sol) polarization free energy of solvation -36.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds