Wall clock time and date at job start Mon Mar 30 2020 04:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46624 * 2 1 4 4 C 1.50697 * 109.47070 * 240.00003 * 2 1 3 5 5 H 1.08002 * 119.99865 * 239.99991 * 4 2 1 6 6 C 1.37876 * 119.99925 * 60.00083 * 4 2 1 7 7 N 1.31512 * 120.00389 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99821 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47361 * 0.02562 * 8 6 4 10 10 H 1.48509 * 109.46957 * 119.99899 * 8 6 4 11 11 H 1.48497 * 109.47609 * 240.00146 * 8 6 4 12 12 C 1.50700 * 109.46986 * 119.99942 * 2 1 3 13 13 O 1.21279 * 120.00113 * 120.00322 * 12 2 1 14 14 N 1.34784 * 119.99961 * 300.00090 * 12 2 1 15 15 C 1.46494 * 119.99635 * 180.02562 * 14 12 2 16 16 H 1.09000 * 110.44113 * 36.08887 * 15 14 12 17 17 C 1.54630 * 110.48590 * 158.77559 * 15 14 12 18 18 C 1.54473 * 101.76951 * 143.47440 * 17 15 14 19 19 N 1.46762 * 105.47324 * 334.58188 * 18 17 15 20 20 C 1.46501 * 124.35097 * 196.99159 * 19 18 17 21 21 C 1.34421 * 111.30195 * 17.01512 * 19 18 17 22 22 O 1.21283 * 124.94416 * 179.55012 * 21 19 18 23 23 H 1.09005 * 109.46932 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47453 * 300.00026 * 1 2 3 25 25 H 1.08996 * 109.47248 * 60.00351 * 1 2 3 26 26 H 0.96998 * 120.00138 * 180.02562 * 7 6 4 27 27 H 0.96995 * 120.00015 * 359.72695 * 14 12 2 28 28 H 1.09006 * 110.96425 * 261.59336 * 17 15 14 29 29 H 1.08999 * 110.96922 * 25.34880 * 17 15 14 30 30 H 1.08996 * 110.24894 * 215.58483 * 18 17 15 31 31 H 1.09008 * 110.32144 * 93.62151 * 18 17 15 32 32 H 1.09006 * 109.47185 * 179.97438 * 20 19 18 33 33 H 1.08992 * 109.47378 * 300.00396 * 20 19 18 34 34 H 1.09007 * 109.47010 * 60.00492 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 3.1474 -2.2864 -3.6038 10 1 1.1677 -1.5866 -4.8165 11 1 3.1473 -0.1858 -4.8160 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6964 1.1193 14 7 1.7067 -0.2499 2.4546 15 6 2.1955 -0.9402 3.6507 16 1 3.2028 -1.3222 3.4849 17 6 2.1673 0.0077 4.8721 18 6 1.7642 -0.9563 6.0098 19 7 1.0306 -2.0471 5.3573 20 6 0.1617 -2.9950 6.0593 21 6 1.2588 -2.0652 4.0327 22 8 0.7837 -2.8672 3.2568 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7090 1.1614 -3.4844 27 1 1.1523 0.5410 2.5436 28 1 3.1523 0.4371 5.0553 29 1 1.4204 0.7906 4.7411 30 1 1.1214 -0.4457 6.7269 31 1 2.6518 -1.3445 6.5094 32 1 -0.2598 -3.7006 5.3433 33 1 0.7430 -3.5371 6.8051 34 1 -0.6452 -2.4521 6.5518 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597280322.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:18 Heat of formation + Delta-G solvation = -96.894675 kcal Electronic energy + Delta-G solvation = -17550.036282 eV Core-core repulsion = 14674.780261 eV Total energy + Delta-G solvation = -2875.256021 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.73834 -40.08535 -37.54528 -35.82557 -35.62510 -32.98009 -31.79733 -28.19085 -27.38836 -27.15086 -24.44772 -22.82069 -21.36556 -20.45931 -18.46773 -18.18011 -17.77329 -17.30741 -16.93766 -16.45036 -15.72947 -15.61677 -14.76939 -14.72145 -14.68550 -14.31151 -13.82053 -13.49720 -13.41890 -13.12313 -12.98438 -12.88942 -12.65632 -12.60844 -12.23856 -12.05573 -11.97210 -11.44047 -11.05090 -10.62106 -10.33608 -9.89114 -9.71185 -8.16214 -6.25949 1.37552 1.38595 1.40114 1.54262 1.83539 2.10585 2.38846 2.56662 3.12927 3.41053 3.49688 3.98618 4.05742 4.30844 4.37343 4.52365 4.67555 4.71530 4.72571 4.85001 4.91334 4.98550 4.99852 5.09270 5.47557 5.49043 5.59986 5.73483 5.90098 6.03312 6.19463 6.70376 6.83778 7.12970 7.39235 7.54248 8.90071 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.045771 B = 0.005676 C = 0.005538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.589514 B = 4932.088172 C = 5054.980580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.026 3.974 3 H 0.051 0.949 4 C -0.529 4.529 5 H 0.043 0.957 6 C 0.020 3.980 7 N -0.910 5.910 8 Si 0.956 3.044 9 H -0.283 1.283 10 H -0.274 1.274 11 H -0.268 1.268 12 C 0.523 3.477 13 O -0.580 6.580 14 N -0.711 5.711 15 C 0.106 3.894 16 H 0.101 0.899 17 C -0.120 4.120 18 C 0.104 3.896 19 N -0.623 5.623 20 C 0.089 3.911 21 C 0.485 3.515 22 O -0.576 6.576 23 H 0.010 0.990 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.266 0.734 27 H 0.415 0.585 28 H 0.128 0.872 29 H 0.107 0.893 30 H 0.117 0.883 31 H 0.096 0.904 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.451 2.921 21.608 21.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.005 3.995 3 H 0.069 0.931 4 C -0.568 4.568 5 H 0.062 0.938 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.781 3.219 9 H -0.208 1.208 10 H -0.200 1.200 11 H -0.193 1.193 12 C 0.312 3.688 13 O -0.459 6.459 14 N -0.366 5.366 15 C -0.003 4.003 16 H 0.119 0.881 17 C -0.158 4.158 18 C -0.017 4.017 19 N -0.358 5.358 20 C -0.052 4.052 21 C 0.271 3.729 22 O -0.454 6.454 23 H 0.029 0.971 24 H 0.070 0.930 25 H 0.093 0.907 26 H 0.075 0.925 27 H 0.252 0.748 28 H 0.146 0.854 29 H 0.126 0.874 30 H 0.135 0.865 31 H 0.114 0.886 32 H 0.069 0.931 33 H 0.104 0.896 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.334 1.862 21.051 21.136 hybrid contribution -0.051 -0.531 -1.166 1.282 sum -0.385 1.331 19.885 19.934 Atomic orbital electron populations 1.21535 0.95440 0.98757 1.01740 1.18809 0.94976 0.96279 0.89434 0.93117 1.21299 1.31590 1.12590 0.91310 0.93828 1.25585 0.95190 0.95783 1.01347 1.69938 1.37179 1.23501 1.24296 0.85542 0.78366 0.78581 0.79372 1.20834 1.19986 1.19342 1.21638 0.77967 0.83462 0.85725 1.90513 1.39867 1.28138 1.87342 1.45787 1.55022 1.31833 1.03911 1.21719 0.97488 0.93499 0.87589 0.88128 1.23014 1.06635 0.96774 0.89403 1.22422 0.97775 0.86100 0.95439 1.48348 1.47265 1.33129 1.07012 1.21720 0.94292 0.92441 0.96793 1.21959 0.81810 0.86035 0.83112 1.90721 1.54845 1.43624 1.56192 0.97087 0.93017 0.90700 0.92509 0.74772 0.85376 0.87435 0.86478 0.88559 0.93057 0.89630 0.89346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.75 8.87 71.98 0.64 -5.11 16 2 C 0.03 1.39 2.64 -12.29 -0.03 1.36 16 3 H 0.05 2.68 8.14 -2.39 -0.02 2.66 16 4 C -0.53 -32.40 8.37 25.60 0.21 -32.18 16 5 H 0.04 2.89 6.75 -2.91 -0.02 2.87 16 6 C 0.02 1.16 5.30 84.65 0.45 1.61 16 7 N -0.91 -52.38 11.32 21.45 0.24 -52.14 16 8 Si 0.96 46.80 29.54 68.60 2.03 48.82 16 9 H -0.28 -14.32 7.11 99.48 0.71 -13.61 16 10 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 11 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 12 C 0.52 25.85 7.10 87.66 0.62 26.48 16 13 O -0.58 -33.88 15.17 -3.03 -0.05 -33.92 16 14 N -0.71 -25.30 5.05 -442.56 -2.23 -27.53 16 15 C 0.11 3.12 3.23 44.99 0.15 3.26 16 16 H 0.10 3.32 7.67 -2.39 -0.02 3.30 16 17 C -0.12 -1.63 6.86 31.65 0.22 -1.41 16 18 C 0.10 1.14 7.35 86.83 0.64 1.78 16 19 N -0.62 -13.64 3.33 -842.89 -2.81 -16.45 16 20 C 0.09 1.55 11.14 127.77 1.42 2.97 16 21 C 0.48 16.65 7.66 87.90 0.67 17.32 16 22 O -0.58 -27.45 17.31 -3.04 -0.05 -27.50 16 23 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 24 H 0.05 2.05 7.57 -2.39 -0.02 2.03 16 25 H 0.07 3.97 6.07 -2.39 -0.01 3.95 16 26 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 27 H 0.41 11.80 7.81 -92.71 -0.72 11.07 16 28 H 0.13 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.11 1.12 7.80 -2.39 -0.02 1.11 16 30 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.05 1.23 7.53 -2.38 -0.02 1.21 16 33 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -86.04 288.05 2.50 -83.54 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 0.38 Total: 9.11 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: 4.99 Total: 16.07 kcal Atomic # 7 Polarization: -91.32 SS G_CDS: -4.80 Total: -96.12 kcal Atomic # 8 Polarization: -61.32 SS G_CDS: -0.10 Total: -61.42 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.82 kcal Total: -86.04 2.50 -83.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597280322.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.356 kcal (2) G-P(sol) polarization free energy of solvation -86.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds