Wall clock time and date at job start Mon Mar 30 2020 04:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47324 * 2 1 4 4 C 1.50708 * 109.46831 * 119.99899 * 2 1 3 5 5 H 1.08000 * 119.99862 * 29.19775 * 4 2 1 6 6 C 1.37877 * 119.99879 * 209.20069 * 4 2 1 7 7 N 1.31515 * 119.99857 * 353.27898 * 6 4 2 8 8 Si 1.86796 * 119.99782 * 173.27459 * 6 4 2 9 9 H 1.48496 * 109.47400 * 60.00092 * 8 6 4 10 10 H 1.48506 * 109.47120 * 299.99691 * 8 6 4 11 11 H 1.48500 * 109.46947 * 180.02562 * 8 6 4 12 12 C 1.50695 * 109.47313 * 239.99551 * 2 1 3 13 13 O 1.21282 * 120.00465 * 240.00364 * 12 2 1 14 14 N 1.34784 * 120.00003 * 60.00082 * 12 2 1 15 15 C 1.46490 * 120.00164 * 180.02562 * 14 12 2 16 16 H 1.08995 * 110.43908 * 36.08711 * 15 14 12 17 17 C 1.54624 * 110.48863 * 158.77517 * 15 14 12 18 18 C 1.54480 * 101.76967 * 143.47553 * 17 15 14 19 19 N 1.46768 * 105.47229 * 334.58549 * 18 17 15 20 20 C 1.46501 * 124.35068 * 196.99389 * 19 18 17 21 21 C 1.34423 * 111.29956 * 17.01566 * 19 18 17 22 22 O 1.21277 * 124.94307 * 179.56117 * 21 19 18 23 23 H 1.08993 * 109.46896 * 294.92211 * 1 2 3 24 24 H 1.09004 * 109.46614 * 54.91770 * 1 2 3 25 25 H 1.08997 * 109.47253 * 174.91383 * 1 2 3 26 26 H 0.97001 * 119.99916 * 354.48765 * 7 6 4 27 27 H 0.97005 * 119.99358 * 0.02562 * 14 12 2 28 28 H 1.08998 * 110.97306 * 261.59770 * 17 15 14 29 29 H 1.09006 * 110.96954 * 25.35463 * 17 15 14 30 30 H 1.09000 * 110.24805 * 215.58877 * 18 17 15 31 31 H 1.08997 * 110.32118 * 93.62418 * 18 17 15 32 32 H 1.09000 * 109.46648 * 179.97438 * 20 19 18 33 33 H 1.08999 * 109.46797 * 300.00161 * 20 19 18 34 34 H 1.09002 * 109.46612 * 59.99892 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 1.4425 -1.4962 1.6790 6 6 3.2448 -0.3572 1.7839 7 7 4.0233 0.5043 1.1664 8 14 3.7816 -1.1022 3.4105 9 1 3.8656 -2.5786 3.2751 10 1 2.7927 -0.7572 4.4633 11 1 5.1129 -0.5626 3.7867 12 6 2.0324 -0.7105 -1.2304 13 8 2.7296 -1.6966 -1.1191 14 7 1.7068 -0.2501 -2.4546 15 6 2.1947 -0.9410 -3.6506 16 1 2.2191 -2.0180 -3.4847 17 6 1.3105 -0.5986 -4.8720 18 6 2.3537 -0.5399 -6.0098 19 7 3.6268 -0.2120 -5.3571 20 6 4.8100 0.2913 -6.0592 21 6 3.5676 -0.4331 -4.0326 22 8 4.4820 -0.2524 -3.2566 23 1 -0.3633 0.4330 0.9319 24 1 -0.3633 0.5907 -0.8410 25 1 -0.3633 -1.0236 -0.0911 26 1 3.7828 0.8303 0.2850 27 1 1.1494 0.5388 -2.5435 28 1 0.5772 -1.3840 -5.0552 29 1 0.8213 0.3667 -4.7411 30 1 2.0866 0.2363 -6.7269 31 1 2.4239 -1.5062 -6.5092 32 1 5.6157 0.4534 -5.3431 33 1 5.1273 -0.4376 -6.8049 34 1 4.5671 1.2329 -6.5517 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597280323.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:22 Heat of formation + Delta-G solvation = -70.671050 kcal Electronic energy + Delta-G solvation = -17759.486394 eV Core-core repulsion = 14885.367515 eV Total energy + Delta-G solvation = -2874.118879 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.41866 -38.22445 -36.19446 -34.18936 -33.57759 -31.45342 -30.33357 -27.08289 -26.26044 -24.52879 -22.71791 -21.73676 -19.75542 -19.11330 -17.11150 -16.67406 -16.35625 -15.59767 -15.55226 -14.53929 -14.12711 -13.71502 -13.62533 -13.47826 -13.07242 -12.74082 -12.43859 -12.42203 -12.11536 -12.02280 -11.59037 -11.21266 -11.13252 -10.93378 -10.61808 -10.03092 -9.87436 -9.68621 -8.69103 -8.58754 -8.51642 -8.25985 -8.14032 -6.23978 -3.95790 2.79314 3.04108 3.53010 3.59648 3.76170 3.94488 3.97040 4.42380 4.55570 4.67135 4.82423 4.91901 5.25235 5.28163 5.32380 5.48555 5.56515 5.64961 5.72249 5.87223 6.19678 6.22759 6.47266 6.54451 6.58658 7.03733 7.12299 7.20445 7.22590 8.02365 8.43355 8.47601 8.56051 8.96140 9.50689 9.76599 11.14535 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.034222 B = 0.006929 C = 0.006115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.000756 B = 4040.073214 C = 4577.997230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.010 3.990 3 H 0.056 0.944 4 C -0.574 4.574 5 H 0.052 0.948 6 C 0.026 3.974 7 N -0.897 5.897 8 Si 1.071 2.929 9 H -0.287 1.287 10 H -0.288 1.288 11 H -0.283 1.283 12 C 0.507 3.493 13 O -0.515 6.515 14 N -0.736 5.736 15 C 0.117 3.883 16 H 0.115 0.885 17 C -0.137 4.137 18 C 0.109 3.891 19 N -0.635 5.635 20 C 0.096 3.904 21 C 0.497 3.503 22 O -0.494 6.494 23 H 0.056 0.944 24 H 0.028 0.972 25 H 0.042 0.958 26 H 0.269 0.731 27 H 0.393 0.607 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.950 0.768 -16.452 17.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.012 4.012 3 H 0.074 0.926 4 C -0.611 4.611 5 H 0.071 0.929 6 C -0.180 4.180 7 N -0.531 5.531 8 Si 0.899 3.101 9 H -0.214 1.214 10 H -0.214 1.214 11 H -0.209 1.209 12 C 0.295 3.705 13 O -0.386 6.386 14 N -0.392 5.392 15 C 0.007 3.993 16 H 0.133 0.867 17 C -0.176 4.176 18 C -0.015 4.015 19 N -0.373 5.373 20 C -0.046 4.046 21 C 0.282 3.718 22 O -0.365 6.365 23 H 0.075 0.925 24 H 0.048 0.952 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.227 0.773 28 H 0.114 0.886 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.635 0.194 -14.757 15.469 hybrid contribution -1.342 0.269 -1.654 2.147 sum -5.977 0.463 -16.411 17.472 Atomic orbital electron populations 1.21662 0.96590 0.99977 0.99851 1.19159 0.92947 0.97860 0.91191 0.92568 1.21541 1.07070 1.22576 1.09944 0.92923 1.25850 0.92815 0.95233 1.04096 1.70753 1.38205 1.28966 1.15211 0.83545 0.76140 0.75918 0.74532 1.21391 1.21449 1.20864 1.22923 0.78818 0.85028 0.83733 1.90547 1.35563 1.26490 1.86039 1.46440 1.55507 1.32644 1.04639 1.21380 0.91049 1.00067 0.86799 0.86696 1.22888 0.97445 1.03900 0.93322 1.21977 0.82832 1.01161 0.95539 1.48194 1.13537 1.67159 1.08432 1.21493 0.87647 0.98215 0.97269 1.21644 0.91105 0.77398 0.81644 1.90812 1.42038 1.49987 1.53713 0.92489 0.95249 0.93908 0.91995 0.77280 0.88586 0.89496 0.90455 0.91101 0.89998 0.92460 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.48 9.03 37.16 0.34 -2.14 16 2 C 0.01 0.26 2.29 -92.92 -0.21 0.05 16 3 H 0.06 1.51 6.94 -51.93 -0.36 1.15 16 4 C -0.57 -16.94 7.54 -34.44 -0.26 -17.20 16 5 H 0.05 1.55 7.82 -52.49 -0.41 1.14 16 6 C 0.03 0.80 5.45 -17.82 -0.10 0.70 16 7 N -0.90 -29.17 13.55 55.43 0.75 -28.42 16 8 Si 1.07 27.06 29.91 -169.99 -5.08 21.97 16 9 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 12 C 0.51 12.75 6.92 -10.98 -0.08 12.67 16 13 O -0.51 -15.38 15.74 5.56 0.09 -15.30 16 14 N -0.74 -13.99 5.06 -53.82 -0.27 -14.26 16 15 C 0.12 1.93 3.23 -67.95 -0.22 1.71 16 16 H 0.12 2.05 7.66 -51.93 -0.40 1.66 16 17 C -0.14 -1.34 6.86 -25.10 -0.17 -1.52 16 18 C 0.11 0.97 7.35 -3.12 -0.02 0.95 16 19 N -0.63 -8.58 3.33 -180.28 -0.60 -9.18 16 20 C 0.10 1.07 11.14 59.85 0.67 1.74 16 21 C 0.50 9.39 7.66 -10.86 -0.08 9.31 16 22 O -0.49 -12.40 17.31 5.56 0.10 -12.30 16 23 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.03 0.47 7.71 -51.93 -0.40 0.07 16 25 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.27 8.87 6.74 -40.82 -0.28 8.59 16 27 H 0.39 6.17 7.90 -40.82 -0.32 5.84 16 28 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 0.75 7.80 -51.93 -0.41 0.34 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 1.10 7.53 -51.93 -0.39 0.71 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 290.79 15.07 4.38 4.38 Total: -1.00 -39.85 290.79 -5.50 -45.35 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -4.72 Total: 1.48 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -0.14 Total: 6.27 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: -0.12 Total: -51.86 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: 0.18 Total: -27.60 kcal Atomic # 14 Polarization: 27.06 SS G_CDS: -5.08 Total: 21.97 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -39.85 -5.50 -45.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597280323.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.323 kcal (2) G-P(sol) polarization free energy of solvation -39.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds