Wall clock time and date at job start Mon Mar 30 2020 04:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47324 * 2 1 4 4 C 1.50708 * 109.46831 * 119.99899 * 2 1 3 5 5 H 1.08000 * 119.99862 * 29.19775 * 4 2 1 6 6 C 1.37877 * 119.99879 * 209.20069 * 4 2 1 7 7 N 1.31515 * 119.99857 * 353.27898 * 6 4 2 8 8 Si 1.86796 * 119.99782 * 173.27459 * 6 4 2 9 9 H 1.48496 * 109.47400 * 60.00092 * 8 6 4 10 10 H 1.48506 * 109.47120 * 299.99691 * 8 6 4 11 11 H 1.48500 * 109.46947 * 180.02562 * 8 6 4 12 12 C 1.50695 * 109.47313 * 239.99551 * 2 1 3 13 13 O 1.21282 * 120.00465 * 240.00364 * 12 2 1 14 14 N 1.34784 * 120.00003 * 60.00082 * 12 2 1 15 15 C 1.46490 * 120.00164 * 180.02562 * 14 12 2 16 16 H 1.08995 * 110.43908 * 36.08711 * 15 14 12 17 17 C 1.54624 * 110.48863 * 158.77517 * 15 14 12 18 18 C 1.54480 * 101.76967 * 143.47553 * 17 15 14 19 19 N 1.46768 * 105.47229 * 334.58549 * 18 17 15 20 20 C 1.46501 * 124.35068 * 196.99389 * 19 18 17 21 21 C 1.34423 * 111.29956 * 17.01566 * 19 18 17 22 22 O 1.21277 * 124.94307 * 179.56117 * 21 19 18 23 23 H 1.08993 * 109.46896 * 294.92211 * 1 2 3 24 24 H 1.09004 * 109.46614 * 54.91770 * 1 2 3 25 25 H 1.08997 * 109.47253 * 174.91383 * 1 2 3 26 26 H 0.97001 * 119.99916 * 354.48765 * 7 6 4 27 27 H 0.97005 * 119.99358 * 0.02562 * 14 12 2 28 28 H 1.08998 * 110.97306 * 261.59770 * 17 15 14 29 29 H 1.09006 * 110.96954 * 25.35463 * 17 15 14 30 30 H 1.09000 * 110.24805 * 215.58877 * 18 17 15 31 31 H 1.08997 * 110.32118 * 93.62418 * 18 17 15 32 32 H 1.09000 * 109.46648 * 179.97438 * 20 19 18 33 33 H 1.08999 * 109.46797 * 300.00161 * 20 19 18 34 34 H 1.09002 * 109.46612 * 59.99892 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 1.4425 -1.4962 1.6790 6 6 3.2448 -0.3572 1.7839 7 7 4.0233 0.5043 1.1664 8 14 3.7816 -1.1022 3.4105 9 1 3.8656 -2.5786 3.2751 10 1 2.7927 -0.7572 4.4633 11 1 5.1129 -0.5626 3.7867 12 6 2.0324 -0.7105 -1.2304 13 8 2.7296 -1.6966 -1.1191 14 7 1.7068 -0.2501 -2.4546 15 6 2.1947 -0.9410 -3.6506 16 1 2.2191 -2.0180 -3.4847 17 6 1.3105 -0.5986 -4.8720 18 6 2.3537 -0.5399 -6.0098 19 7 3.6268 -0.2120 -5.3571 20 6 4.8100 0.2913 -6.0592 21 6 3.5676 -0.4331 -4.0326 22 8 4.4820 -0.2524 -3.2566 23 1 -0.3633 0.4330 0.9319 24 1 -0.3633 0.5907 -0.8410 25 1 -0.3633 -1.0236 -0.0911 26 1 3.7828 0.8303 0.2850 27 1 1.1494 0.5388 -2.5435 28 1 0.5772 -1.3840 -5.0552 29 1 0.8213 0.3667 -4.7411 30 1 2.0866 0.2363 -6.7269 31 1 2.4239 -1.5062 -6.5092 32 1 5.6157 0.4534 -5.3431 33 1 5.1273 -0.4376 -6.8049 34 1 4.5671 1.2329 -6.5517 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597280323.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:22 Heat of formation + Delta-G solvation = -103.323161 kcal Electronic energy + Delta-G solvation = -17760.902296 eV Core-core repulsion = 14885.367515 eV Total energy + Delta-G solvation = -2875.534781 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.75837 -40.07936 -37.59660 -35.89041 -35.56640 -33.12691 -31.91327 -28.23010 -27.37945 -26.65081 -24.51309 -22.86425 -21.53031 -20.51771 -19.04433 -17.96021 -17.85087 -17.33590 -17.01518 -16.13528 -15.74645 -15.63990 -15.01788 -14.80241 -14.66815 -14.31148 -13.85000 -13.68341 -13.46193 -13.16835 -13.00480 -12.87960 -12.78101 -12.59035 -12.04172 -12.00263 -11.74303 -11.45342 -10.76864 -10.70136 -10.30351 -9.88099 -9.75195 -8.63600 -6.34029 1.35773 1.48194 1.59771 1.76919 1.85366 2.13389 2.46330 2.60945 3.24759 3.38669 3.47169 3.96192 4.01268 4.28782 4.32605 4.47663 4.49518 4.62617 4.66271 4.67747 4.79962 4.85696 4.94904 5.05173 5.24937 5.42985 5.50406 5.58648 5.91181 6.00249 6.15998 6.48617 6.81996 7.10881 7.46036 7.62005 8.74910 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.034222 B = 0.006929 C = 0.006115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.000756 B = 4040.073214 C = 4577.997230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.003 4.003 3 H 0.038 0.962 4 C -0.583 4.583 5 H 0.047 0.953 6 C -0.033 4.033 7 N -0.931 5.931 8 Si 1.113 2.887 9 H -0.283 1.283 10 H -0.253 1.253 11 H -0.286 1.286 12 C 0.507 3.493 13 O -0.575 6.575 14 N -0.716 5.716 15 C 0.107 3.893 16 H 0.096 0.904 17 C -0.117 4.117 18 C 0.104 3.896 19 N -0.623 5.623 20 C 0.089 3.911 21 C 0.479 3.521 22 O -0.578 6.578 23 H 0.059 0.941 24 H 0.074 0.926 25 H 0.043 0.957 26 H 0.250 0.750 27 H 0.412 0.588 28 H 0.129 0.871 29 H 0.108 0.892 30 H 0.119 0.881 31 H 0.096 0.904 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.524 0.968 -18.930 21.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.025 4.025 3 H 0.056 0.944 4 C -0.621 4.621 5 H 0.065 0.935 6 C -0.231 4.231 7 N -0.567 5.567 8 Si 0.934 3.066 9 H -0.209 1.209 10 H -0.178 1.178 11 H -0.212 1.212 12 C 0.296 3.704 13 O -0.451 6.451 14 N -0.371 5.371 15 C -0.002 4.002 16 H 0.114 0.886 17 C -0.155 4.155 18 C -0.018 4.018 19 N -0.359 5.359 20 C -0.052 4.052 21 C 0.265 3.735 22 O -0.456 6.456 23 H 0.078 0.922 24 H 0.093 0.907 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.249 0.751 28 H 0.148 0.852 29 H 0.126 0.874 30 H 0.137 0.863 31 H 0.114 0.886 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.312 0.438 -17.352 18.835 hybrid contribution -0.601 0.206 -1.086 1.258 sum -7.913 0.644 -18.438 20.075 Atomic orbital electron populations 1.21544 0.92196 1.01028 1.02105 1.19226 0.96622 0.96110 0.90510 0.94431 1.21969 1.06650 1.22017 1.11430 0.93479 1.27336 0.93328 0.95156 1.07299 1.70902 1.39387 1.31582 1.14857 0.83031 0.76454 0.75256 0.71809 1.20913 1.17755 1.21203 1.22520 0.78054 0.84184 0.85619 1.90514 1.38190 1.29214 1.87215 1.45965 1.54384 1.32744 1.04046 1.21678 0.91918 0.98636 0.88009 0.88632 1.23002 0.97132 1.06159 0.89228 1.22438 0.79833 1.04018 0.95483 1.48366 1.15825 1.64726 1.06938 1.21714 0.86139 1.00693 0.96704 1.22125 0.91078 0.77095 0.83161 1.90770 1.44573 1.53969 1.56294 0.92152 0.90746 0.93774 0.93982 0.75094 0.85227 0.87367 0.86341 0.88581 0.93476 0.89493 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.29 9.03 71.98 0.65 -3.64 16 2 C 0.00 -0.15 2.29 -12.28 -0.03 -0.18 16 3 H 0.04 2.09 6.94 -2.39 -0.02 2.08 16 4 C -0.58 -35.31 7.54 25.60 0.19 -35.12 16 5 H 0.05 2.82 7.82 -2.91 -0.02 2.80 16 6 C -0.03 -2.07 5.45 84.65 0.46 -1.61 16 7 N -0.93 -63.33 13.55 21.45 0.29 -63.04 16 8 Si 1.11 55.60 29.91 68.60 2.05 57.65 16 9 H -0.28 -13.78 7.11 99.48 0.71 -13.08 16 10 H -0.25 -11.12 7.11 99.48 0.71 -10.42 16 11 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 12 C 0.51 26.22 6.92 87.65 0.61 26.82 16 13 O -0.57 -36.00 15.74 -3.04 -0.05 -36.05 16 14 N -0.72 -26.87 5.06 -442.58 -2.24 -29.10 16 15 C 0.11 3.42 3.23 44.99 0.15 3.56 16 16 H 0.10 3.45 7.66 -2.39 -0.02 3.43 16 17 C -0.12 -1.75 6.86 31.65 0.22 -1.53 16 18 C 0.10 1.32 7.35 86.83 0.64 1.96 16 19 N -0.62 -15.49 3.33 -842.88 -2.81 -18.30 16 20 C 0.09 1.81 11.14 127.77 1.42 3.24 16 21 C 0.48 18.35 7.66 87.90 0.67 19.02 16 22 O -0.58 -30.92 17.31 -3.02 -0.05 -30.98 16 23 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 24 H 0.07 2.17 7.71 -2.39 -0.02 2.15 16 25 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.25 17.51 6.74 -92.71 -0.62 16.89 16 27 H 0.41 12.07 7.90 -92.70 -0.73 11.34 16 28 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.11 1.23 7.80 -2.38 -0.02 1.21 16 30 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 1.31 7.53 -2.39 -0.02 1.29 16 33 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -96.76 290.79 2.69 -94.08 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.51 Total: 13.22 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 4.98 Total: 12.52 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -4.76 Total: -110.44 kcal Atomic # 8 Polarization: -66.93 SS G_CDS: -0.10 Total: -67.03 kcal Atomic # 14 Polarization: 55.60 SS G_CDS: 2.05 Total: 57.65 kcal Total: -96.76 2.69 -94.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597280323.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.248 kcal (2) G-P(sol) polarization free energy of solvation -96.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds