Wall clock time and date at job start Mon Mar 30 2020 04:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47001 * 2 1 4 4 C 1.50693 * 109.46981 * 240.00489 * 2 1 3 5 5 H 1.08004 * 119.99672 * 245.38459 * 4 2 1 6 6 C 1.37878 * 120.00296 * 65.38088 * 4 2 1 7 7 N 1.31520 * 119.99900 * 185.15949 * 6 4 2 8 8 Si 1.86803 * 120.00011 * 4.88832 * 6 4 2 9 9 H 1.48502 * 109.46767 * 270.27554 * 8 6 4 10 10 H 1.48493 * 109.47012 * 30.27175 * 8 6 4 11 11 H 1.48495 * 109.47232 * 150.27279 * 8 6 4 12 12 C 1.50697 * 109.47343 * 120.00238 * 2 1 3 13 13 O 1.21272 * 120.00317 * 120.00021 * 12 2 1 14 14 N 1.34778 * 119.99729 * 300.00042 * 12 2 1 15 15 C 1.47267 * 121.35043 * 179.97438 * 14 12 2 16 16 C 1.52995 * 108.18754 * 118.47441 * 15 14 12 17 17 N 1.45645 * 110.77332 * 46.72145 * 16 15 14 18 18 C 1.46498 * 117.70542 * 158.09867 * 17 16 15 19 19 C 1.33379 * 124.59220 * 338.08747 * 17 16 15 20 20 O 1.21283 * 118.48986 * 184.34496 * 19 17 16 21 21 C 1.47045 * 121.35505 * 359.71429 * 14 12 2 22 22 H 1.09000 * 109.47625 * 54.99871 * 1 2 3 23 23 H 1.08992 * 109.47290 * 175.00285 * 1 2 3 24 24 H 1.09000 * 109.47081 * 294.99873 * 1 2 3 25 25 H 0.96997 * 120.00261 * 354.72512 * 7 6 4 26 26 H 1.09004 * 109.71958 * 238.14423 * 15 14 12 27 27 H 1.08994 * 109.72219 * 358.75804 * 15 14 12 28 28 H 1.08999 * 109.21837 * 167.06007 * 16 15 14 29 29 H 1.09004 * 109.21535 * 286.38893 * 16 15 14 30 30 H 1.08998 * 109.47104 * 89.99851 * 18 17 16 31 31 H 1.09002 * 109.47313 * 210.00416 * 18 17 16 32 32 H 1.09007 * 109.47436 * 330.00575 * 18 17 16 33 33 H 1.08998 * 109.57273 * 342.58610 * 21 14 12 34 34 H 1.09004 * 109.56763 * 102.93857 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5796 -1.6363 -1.1338 6 6 1.7931 -0.1780 -2.4797 7 7 2.1415 -0.8469 -3.5572 8 14 0.9674 1.4897 -2.6419 9 1 -0.5053 1.3090 -2.7037 10 1 1.3141 2.3300 -1.4677 11 1 1.4369 2.1559 -3.8832 12 6 2.0324 -0.7104 1.2304 13 8 2.7296 -1.6964 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 2.1807 -0.9212 3.6766 16 6 3.0460 0.0681 4.4598 17 7 2.3919 1.3661 4.5520 18 6 2.8041 2.2611 5.6361 19 6 1.4442 1.7974 3.7184 20 8 1.0308 2.9301 3.8488 21 6 0.8685 0.9462 2.6240 22 1 -0.3634 0.5894 -0.8418 23 1 -0.3633 -1.0237 -0.0895 24 1 -0.3633 0.4343 0.9314 25 1 2.6347 -1.6780 -3.4738 26 1 1.3279 -1.2247 4.2839 27 1 2.7722 -1.7968 3.4096 28 1 3.2156 -0.3204 5.4640 29 1 4.0047 0.1845 3.9544 30 1 3.6270 2.8894 5.2955 31 1 1.9630 2.8902 5.9275 32 1 3.1290 1.6694 6.4921 33 1 0.8490 1.5133 1.6934 34 1 -0.1447 0.6470 2.8925 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597291909.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:30 Heat of formation + Delta-G solvation = -81.309411 kcal Electronic energy + Delta-G solvation = -17971.976954 eV Core-core repulsion = 15097.396761 eV Total energy + Delta-G solvation = -2874.580193 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.91734 -40.37380 -37.54480 -36.25286 -35.69763 -33.34637 -31.09232 -29.64099 -27.02618 -26.43814 -25.53449 -23.53499 -21.08402 -19.66641 -19.41037 -18.34503 -18.16809 -17.29847 -16.92779 -16.44231 -16.06647 -15.74395 -15.21457 -15.06190 -14.41099 -14.20443 -14.04405 -13.71314 -13.55338 -13.34698 -13.08231 -12.98583 -12.94965 -12.39658 -12.36270 -12.00058 -11.62297 -11.42362 -10.84163 -10.74132 -10.46578 -9.91145 -9.73371 -8.77317 -6.41514 1.38653 1.43730 1.55683 1.65088 1.70274 1.72855 2.07382 2.49401 3.09058 3.32710 3.61834 3.81180 4.07952 4.13039 4.27172 4.38299 4.42283 4.49983 4.59038 4.61295 4.64437 4.76358 4.86808 4.92756 4.99651 5.17360 5.42890 5.46667 5.74023 6.03434 6.23641 6.26950 6.57306 6.93605 7.23987 7.41031 8.63585 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.032439 B = 0.007684 C = 0.006717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.951290 B = 3642.904952 C = 4167.717241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.012 4.012 3 H 0.063 0.937 4 C -0.588 4.588 5 H 0.020 0.980 6 C -0.027 4.027 7 N -0.944 5.944 8 Si 1.091 2.909 9 H -0.252 1.252 10 H -0.243 1.243 11 H -0.294 1.294 12 C 0.536 3.464 13 O -0.575 6.575 14 N -0.623 5.623 15 C 0.089 3.911 16 C 0.104 3.896 17 N -0.603 5.603 18 C 0.075 3.925 19 C 0.507 3.493 20 O -0.579 6.579 21 C 0.094 3.906 22 H 0.055 0.945 23 H 0.044 0.956 24 H 0.085 0.915 25 H 0.248 0.752 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.133 0.867 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.106 0.894 33 H 0.121 0.879 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.796 5.686 21.011 21.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.034 4.034 3 H 0.080 0.920 4 C -0.626 4.626 5 H 0.038 0.962 6 C -0.223 4.223 7 N -0.581 5.581 8 Si 0.911 3.089 9 H -0.177 1.177 10 H -0.167 1.167 11 H -0.221 1.221 12 C 0.326 3.674 13 O -0.453 6.453 14 N -0.360 5.360 15 C -0.033 4.033 16 C -0.019 4.019 17 N -0.335 5.335 18 C -0.067 4.067 19 C 0.295 3.705 20 O -0.460 6.460 21 C -0.031 4.031 22 H 0.074 0.926 23 H 0.064 0.936 24 H 0.103 0.897 25 H 0.057 0.943 26 H 0.123 0.877 27 H 0.115 0.885 28 H 0.150 0.850 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.125 0.875 33 H 0.138 0.862 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.200 6.760 19.928 21.285 hybrid contribution 1.179 -1.779 0.439 2.179 sum -2.021 4.981 20.367 21.065 Atomic orbital electron populations 1.22211 0.94132 1.01874 1.02264 1.19332 0.95909 0.97170 0.90967 0.91967 1.22112 1.38705 1.09203 0.92583 0.96176 1.27427 0.96757 1.06726 0.91372 1.70934 1.38649 1.17007 1.31494 0.83496 0.77186 0.71216 0.76987 1.17676 1.16726 1.22084 1.21155 0.78018 0.83487 0.84691 1.90549 1.39604 1.28586 1.86610 1.48321 1.52627 1.29174 1.05844 1.22145 1.00267 0.96229 0.84626 1.21952 0.95211 0.81316 1.03385 1.47300 1.37783 1.18480 1.29947 1.21904 1.00723 0.94656 0.89442 1.20402 0.79636 0.87384 0.83118 1.90725 1.62097 1.20096 1.73051 1.22153 0.96434 0.85463 0.99061 0.92586 0.93649 0.89670 0.94270 0.87667 0.88482 0.84959 0.92126 0.92791 0.91328 0.87518 0.86153 0.84809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.56 8.35 71.98 0.60 -4.96 16 2 C -0.01 -0.55 1.41 -12.29 -0.02 -0.57 16 3 H 0.06 2.74 6.07 -2.38 -0.01 2.72 16 4 C -0.59 -34.79 8.72 25.60 0.22 -34.56 16 5 H 0.02 1.38 7.00 -2.91 -0.02 1.36 16 6 C -0.03 -1.58 5.43 84.65 0.46 -1.12 16 7 N -0.94 -61.12 13.70 21.45 0.29 -60.83 16 8 Si 1.09 48.96 25.28 68.60 1.73 50.69 16 9 H -0.25 -10.11 6.80 99.48 0.68 -9.43 16 10 H -0.24 -9.43 6.36 99.48 0.63 -8.79 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 12 C 0.54 22.90 7.11 87.66 0.62 23.52 16 13 O -0.58 -29.68 14.95 -3.00 -0.04 -29.73 16 14 N -0.62 -18.84 2.98 -823.87 -2.46 -21.30 16 15 C 0.09 1.95 6.53 86.23 0.56 2.51 16 16 C 0.10 1.75 6.57 86.54 0.57 2.32 16 17 N -0.60 -12.41 3.20 -851.77 -2.73 -15.14 16 18 C 0.07 1.16 10.19 127.77 1.30 2.46 16 19 C 0.51 13.34 7.57 87.69 0.66 14.00 16 20 O -0.58 -18.67 16.25 -3.04 -0.05 -18.72 16 21 C 0.09 2.40 4.74 85.35 0.40 2.80 16 22 H 0.06 2.10 4.37 -2.39 -0.01 2.09 16 23 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.08 2.38 4.79 -2.39 -0.01 2.37 16 25 H 0.25 16.60 8.72 -92.71 -0.81 15.79 16 26 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 27 H 0.10 2.47 7.06 -2.39 -0.02 2.45 16 28 H 0.13 1.09 7.84 -2.39 -0.02 1.07 16 29 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 1.25 7.23 -2.39 -0.02 1.23 16 32 H 0.11 0.86 7.81 -2.38 -0.02 0.84 16 33 H 0.12 3.33 5.38 -2.39 -0.01 3.32 16 34 H 0.13 2.61 7.71 -2.38 -0.02 2.59 16 Total: -1.00 -81.39 269.82 3.11 -78.28 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 0.97 Total: 10.33 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 5.39 Total: 6.42 kcal Atomic # 7 Polarization: -92.38 SS G_CDS: -4.89 Total: -97.27 kcal Atomic # 8 Polarization: -48.36 SS G_CDS: -0.09 Total: -48.45 kcal Atomic # 14 Polarization: 48.96 SS G_CDS: 1.73 Total: 50.69 kcal Total: -81.39 3.11 -78.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597291909.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.030 kcal (2) G-P(sol) polarization free energy of solvation -81.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds