Wall clock time and date at job start Mon Mar 30 2020 04:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47337 * 2 1 4 4 C 1.50703 * 109.47168 * 120.00044 * 2 1 3 5 5 H 1.08001 * 120.00247 * 119.99366 * 4 2 1 6 6 C 1.37880 * 119.99847 * 300.00214 * 4 2 1 7 7 N 1.31511 * 120.00211 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 119.99972 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.46774 * 90.00436 * 8 6 4 10 10 H 1.48494 * 109.47024 * 210.00425 * 8 6 4 11 11 H 1.48501 * 109.47099 * 330.00636 * 8 6 4 12 12 C 1.50699 * 109.46935 * 239.99842 * 2 1 3 13 13 O 1.21281 * 119.99974 * 251.26785 * 12 2 1 14 14 N 1.34773 * 119.99920 * 71.27036 * 12 2 1 15 15 C 1.46501 * 119.99795 * 175.50025 * 14 12 2 16 16 C 1.46501 * 120.00323 * 355.22490 * 14 12 2 17 17 H 1.08999 * 110.42687 * 355.97540 * 16 14 12 18 18 C 1.54626 * 110.48937 * 233.43484 * 16 14 12 19 19 C 1.54476 * 101.76544 * 216.52365 * 18 16 14 20 20 N 1.46770 * 105.47353 * 25.41157 * 19 18 16 21 21 C 1.34655 * 111.33542 * 342.87516 * 20 19 18 22 22 O 1.21285 * 125.07030 * 180.50778 * 21 20 19 23 23 H 1.09001 * 109.47339 * 65.61254 * 1 2 3 24 24 H 1.08995 * 109.47671 * 185.61367 * 1 2 3 25 25 H 1.09003 * 109.46997 * 305.61331 * 1 2 3 26 26 H 0.96996 * 120.00575 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.47018 * 87.81530 * 15 14 12 28 28 H 1.09000 * 109.47149 * 207.81187 * 15 14 12 29 29 H 1.08997 * 109.47397 * 327.80947 * 15 14 12 30 30 H 1.09003 * 110.96714 * 334.63980 * 18 16 14 31 31 H 1.09004 * 110.96909 * 98.39960 * 18 16 14 32 32 H 1.09000 * 110.24607 * 144.41378 * 19 18 16 33 33 H 1.09001 * 110.24296 * 266.32791 * 19 18 16 34 34 H 0.97002 * 124.34362 * 162.97787 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 2.1380 -0.8590 3.5566 8 14 0.6258 1.2798 2.6541 9 1 -0.8022 0.8744 2.6993 10 1 0.9771 1.9954 3.9070 11 1 0.8490 2.1773 1.4922 12 6 2.0323 -0.7104 -1.2304 13 8 2.5524 -1.8015 -1.1308 14 7 1.9035 -0.1333 -2.4415 15 6 2.4790 -0.7775 -3.6248 16 6 1.1829 1.1351 -2.5757 17 1 0.7576 1.4342 -1.6177 18 6 0.0740 1.0170 -3.6468 19 6 0.1187 2.4153 -4.3020 20 7 1.4825 2.9093 -4.0779 21 6 2.1024 2.2128 -3.1064 22 8 3.2319 2.4172 -2.7147 23 1 -0.3634 0.4243 -0.9360 24 1 -0.3634 -1.0227 0.1005 25 1 -0.3633 0.5984 0.8355 26 1 1.9033 -0.5279 4.4376 27 1 1.7562 -1.4766 -4.0455 28 1 2.7255 -0.0190 -4.3677 29 1 3.3833 -1.3162 -3.3417 30 1 0.3132 0.2389 -4.3717 31 1 -0.8962 0.8332 -3.1853 32 1 -0.0838 2.3380 -5.3702 33 1 -0.6062 3.0771 -3.8281 34 1 1.8853 3.6445 -4.5660 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597450788.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:48 Heat of formation + Delta-G solvation = -83.928282 kcal Electronic energy + Delta-G solvation = -18169.414914 eV Core-core repulsion = 15294.721158 eV Total energy + Delta-G solvation = -2874.693756 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.92453 -40.29028 -37.57742 -36.12177 -35.90371 -33.41188 -31.27035 -28.81726 -27.66132 -27.19893 -24.14823 -22.85344 -21.93781 -20.08125 -18.92167 -18.41507 -18.00934 -17.44540 -16.75689 -16.28480 -16.18742 -15.55212 -15.11005 -14.87607 -14.73144 -14.43017 -14.08301 -13.93757 -13.50597 -13.38575 -13.07355 -12.85854 -12.76993 -12.52368 -12.17325 -12.07887 -11.51526 -11.30851 -11.26587 -10.79526 -10.51012 -10.06955 -9.64841 -8.29440 -6.37762 1.28551 1.30348 1.38520 1.48388 1.70642 2.05874 2.32607 2.44162 3.03493 3.36166 3.53240 3.74185 3.95924 4.04289 4.29339 4.33369 4.49046 4.53387 4.56906 4.71896 4.78546 4.84644 4.90700 5.07664 5.15061 5.41276 5.43522 5.51839 5.83676 5.99184 6.15307 6.39906 6.75274 7.18770 7.22271 7.34198 8.88550 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.027639 B = 0.008766 C = 0.007771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.808335 B = 3193.407071 C = 3602.296293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.007 4.007 3 H 0.051 0.949 4 C -0.525 4.525 5 H 0.027 0.973 6 C 0.007 3.993 7 N -0.951 5.951 8 Si 0.957 3.043 9 H -0.247 1.247 10 H -0.297 1.297 11 H -0.238 1.238 12 C 0.529 3.471 13 O -0.577 6.577 14 N -0.604 5.604 15 C 0.089 3.911 16 C 0.084 3.916 17 H 0.132 0.868 18 C -0.137 4.137 19 C 0.104 3.896 20 N -0.715 5.715 21 C 0.497 3.503 22 O -0.575 6.575 23 H 0.092 0.908 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.268 0.732 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.045 0.955 30 H 0.100 0.900 31 H 0.125 0.875 32 H 0.119 0.881 33 H 0.101 0.899 34 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.084 11.111 -20.772 26.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.029 4.029 3 H 0.069 0.931 4 C -0.563 4.563 5 H 0.045 0.955 6 C -0.190 4.190 7 N -0.591 5.591 8 Si 0.781 3.219 9 H -0.171 1.171 10 H -0.225 1.225 11 H -0.162 1.162 12 C 0.319 3.681 13 O -0.455 6.455 14 N -0.337 5.337 15 C -0.053 4.053 16 C -0.024 4.024 17 H 0.150 0.850 18 C -0.175 4.175 19 C -0.019 4.019 20 N -0.371 5.371 21 C 0.282 3.718 22 O -0.453 6.453 23 H 0.110 0.890 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.064 0.936 30 H 0.119 0.881 31 H 0.143 0.857 32 H 0.137 0.863 33 H 0.119 0.881 34 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -11.269 10.513 -20.312 25.497 hybrid contribution 0.687 0.393 0.698 1.055 sum -10.582 10.906 -19.614 24.812 Atomic orbital electron populations 1.22182 0.93532 1.02353 1.01992 1.19232 0.96140 0.96536 0.90960 0.93113 1.21067 1.32036 1.12758 0.90440 0.95474 1.26052 0.97501 1.00748 0.94658 1.70071 1.47474 1.42789 0.98732 0.85742 0.79464 0.78768 0.77891 1.17142 1.22509 1.16168 1.21150 0.76888 0.85093 0.84955 1.90558 1.45292 1.23154 1.86479 1.47683 1.56359 1.22309 1.07364 1.21634 0.98786 0.98293 0.86604 1.22402 0.93223 0.82813 1.03919 0.85022 1.23173 0.98695 0.98907 0.96723 1.22413 0.81794 0.93782 1.03911 1.46203 1.17034 1.36327 1.37565 1.21534 0.86438 0.83837 0.80015 1.90762 1.20772 1.71161 1.62651 0.89001 0.92769 0.93011 0.92268 0.90117 0.89891 0.93590 0.88111 0.85706 0.86330 0.88058 0.73945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.46 8.11 71.98 0.58 -4.88 16 2 C -0.01 -0.34 1.38 -12.29 -0.02 -0.36 16 3 H 0.05 2.46 6.55 -2.39 -0.02 2.45 16 4 C -0.52 -32.90 8.95 25.60 0.23 -32.67 16 5 H 0.03 1.99 7.06 -2.91 -0.02 1.97 16 6 C 0.01 0.42 5.45 84.66 0.46 0.88 16 7 N -0.95 -62.54 13.96 21.45 0.30 -62.24 16 8 Si 0.96 43.92 24.32 68.60 1.67 45.59 16 9 H -0.25 -10.11 6.92 99.48 0.69 -9.43 16 10 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 11 H -0.24 -9.71 6.53 99.48 0.65 -9.06 16 12 C 0.53 25.02 6.94 87.66 0.61 25.63 16 13 O -0.58 -32.80 15.19 -3.03 -0.05 -32.85 16 14 N -0.60 -20.83 2.85 -822.64 -2.34 -23.17 16 15 C 0.09 2.54 9.01 127.77 1.15 3.69 16 16 C 0.08 2.14 2.33 44.98 0.10 2.24 16 17 H 0.13 3.56 4.27 -2.39 -0.01 3.55 16 18 C -0.14 -1.62 6.69 31.65 0.21 -1.41 16 19 C 0.10 0.69 7.78 86.83 0.68 1.37 16 20 N -0.72 -10.78 6.25 -459.48 -2.87 -13.65 16 21 C 0.50 13.70 7.19 87.86 0.63 14.33 16 22 O -0.57 -22.81 18.02 -3.04 -0.05 -22.87 16 23 H 0.09 2.45 5.39 -2.39 -0.01 2.43 16 24 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.05 1.95 3.44 -2.39 -0.01 1.94 16 26 H 0.27 16.26 8.31 -92.71 -0.77 15.49 16 27 H 0.08 1.85 7.99 -2.39 -0.02 1.83 16 28 H 0.08 1.92 7.40 -2.39 -0.02 1.91 16 29 H 0.05 1.60 7.56 -2.39 -0.02 1.58 16 30 H 0.10 1.07 6.85 -2.39 -0.02 1.05 16 31 H 0.12 0.94 7.97 -2.39 -0.02 0.92 16 32 H 0.12 0.08 8.14 -2.39 -0.02 0.06 16 33 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.42 4.89 8.96 -92.71 -0.83 4.06 16 Total: -1.00 -91.74 271.12 1.52 -90.22 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 0.23 Total: 10.14 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 4.64 Total: 8.83 kcal Atomic # 7 Polarization: -94.15 SS G_CDS: -4.91 Total: -99.06 kcal Atomic # 8 Polarization: -55.61 SS G_CDS: -0.10 Total: -55.71 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.67 Total: 45.59 kcal Total: -91.74 1.52 -90.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597450788.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.288 kcal (2) G-P(sol) polarization free energy of solvation -91.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds