Wall clock time and date at job start Mon Mar 30 2020 04:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.21280 * 119.99901 * 239.99860 * 12 2 1 14 14 N 1.34774 * 120.00338 * 59.99981 * 12 2 1 15 15 C 1.47075 * 136.05566 * 359.63328 * 14 12 2 16 16 C 1.53753 * 87.88663 * 152.96204 * 15 14 12 17 17 C 1.52994 * 114.08739 * 139.78135 * 16 15 14 18 18 C 1.50707 * 109.47362 * 91.55559 * 17 16 15 19 19 N 1.34776 * 120.00008 * 179.97438 * 18 17 16 20 20 O 1.21281 * 119.99946 * 0.02562 * 18 17 16 21 21 C 1.47064 * 136.06258 * 179.97438 * 14 12 2 22 22 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 23 23 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 1.09005 * 113.46071 * 267.69171 * 15 14 12 27 27 H 1.08995 * 113.46902 * 38.12659 * 15 14 12 28 28 H 1.09005 * 114.56942 * 272.65547 * 16 15 14 29 29 H 1.08999 * 109.47180 * 211.55827 * 17 16 15 30 30 H 1.08999 * 109.47147 * 331.55548 * 17 16 15 31 31 H 0.97011 * 120.00153 * 0.02562 * 19 18 17 32 32 H 0.96992 * 120.00243 * 179.97438 * 19 18 17 33 33 H 1.09008 * 113.46675 * 321.86709 * 21 14 12 34 34 H 1.08996 * 113.46884 * 92.30067 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 6 2.0323 -0.7103 -1.2305 13 8 2.7295 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 0.9104 0.8651 -2.9893 16 6 1.8014 0.8261 -4.2417 17 6 1.0427 1.0302 -5.5545 18 6 1.0294 2.4960 -5.9045 19 7 0.4135 2.9150 -7.0277 20 8 1.5737 3.2984 -5.1759 21 6 1.9863 -0.6444 -3.8434 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 0.7089 1.1611 3.4845 26 1 -0.1284 0.6007 -3.1873 27 1 1.0092 1.7848 -2.4128 28 1 2.7090 1.4257 -4.1710 29 1 1.5357 0.4711 -6.3498 30 1 0.0186 0.6744 -5.4413 31 1 -0.0215 2.2732 -7.6107 32 1 0.4047 3.8584 -7.2528 33 1 3.0019 -1.0105 -3.9946 34 1 1.2315 -1.3070 -4.2668 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597597837.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:44 Heat of formation + Delta-G solvation = -46.650914 kcal Electronic energy + Delta-G solvation = -17147.276116 eV Core-core repulsion = 14274.198828 eV Total energy + Delta-G solvation = -2873.077288 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.30136 -39.09382 -37.09643 -33.86861 -33.66819 -31.61822 -30.31382 -27.00301 -25.71646 -25.02665 -22.61356 -21.12110 -19.95158 -18.39561 -17.57371 -16.79224 -16.31160 -15.78018 -15.61593 -15.12170 -14.88562 -14.10650 -14.00295 -13.23614 -12.92019 -12.60428 -12.34352 -12.19496 -11.81590 -11.36708 -11.23095 -10.93657 -10.67945 -10.65224 -10.34036 -10.19688 -10.02752 -9.90948 -9.90274 -8.91831 -8.55950 -8.27672 -8.05960 -5.97466 -4.00811 2.49069 3.28827 3.40364 3.42165 3.45864 3.55237 3.77093 4.35475 4.50920 4.68692 4.84977 5.18879 5.26638 5.35307 5.41274 5.59744 5.62464 5.71424 5.87835 6.05130 6.41496 6.54727 6.58607 6.74777 6.93633 7.02604 7.09196 7.56614 7.81872 8.07633 8.08454 8.27372 8.55156 9.07265 9.28062 9.64129 11.10162 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.045744 B = 0.005031 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.960970 B = 5564.259548 C = 5912.139107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.037 3.963 3 H 0.052 0.948 4 C -0.502 4.502 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.902 3.098 9 H -0.288 1.288 10 H -0.277 1.277 11 H -0.276 1.276 12 C 0.549 3.451 13 O -0.545 6.545 14 N -0.654 5.654 15 C 0.113 3.887 16 C -0.115 4.115 17 C -0.131 4.131 18 C 0.515 3.485 19 N -0.862 5.862 20 O -0.535 6.535 21 C 0.103 3.897 22 H 0.014 0.986 23 H 0.028 0.972 24 H 0.093 0.907 25 H 0.261 0.739 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.113 0.887 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.400 0.600 32 H 0.399 0.601 33 H 0.072 0.928 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.524 2.808 -19.889 20.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.016 3.984 3 H 0.070 0.930 4 C -0.541 4.541 5 H 0.091 0.909 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.730 3.270 9 H -0.214 1.214 10 H -0.202 1.202 11 H -0.202 1.202 12 C 0.343 3.657 13 O -0.421 6.421 14 N -0.392 5.392 15 C -0.011 4.011 16 C -0.134 4.134 17 C -0.171 4.171 18 C 0.300 3.700 19 N -0.426 5.426 20 O -0.410 6.410 21 C -0.021 4.021 22 H 0.033 0.967 23 H 0.048 0.952 24 H 0.111 0.889 25 H 0.071 0.929 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.131 0.869 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.228 0.772 32 H 0.230 0.770 33 H 0.090 0.910 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.737 2.644 -18.796 19.345 hybrid contribution -0.121 -0.321 0.284 0.446 sum -3.858 2.323 -18.511 19.051 Atomic orbital electron populations 1.21744 0.96537 0.99614 1.01011 1.18811 0.94176 0.96821 0.88615 0.93022 1.21123 1.31082 1.12834 0.89024 0.90880 1.24952 0.95127 0.95072 0.99068 1.69874 1.37081 1.23046 1.23589 0.86491 0.79300 0.79666 0.81583 1.21362 1.20213 1.20176 1.21768 0.78095 0.83532 0.82303 1.90535 1.38834 1.27129 1.85574 1.49897 1.53045 1.31960 1.04324 1.22961 0.94878 0.91349 0.91924 1.22917 1.00618 0.97537 0.92375 1.21598 1.03198 0.92939 0.99385 1.20751 0.77270 0.91608 0.80344 1.43938 1.59679 1.12714 1.26243 1.90791 1.44086 1.56384 1.49765 1.22845 1.01500 0.95060 0.82699 0.96712 0.95236 0.88891 0.92926 0.90632 0.90090 0.86871 0.88201 0.88252 0.77190 0.77033 0.90957 0.90768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 8.85 37.16 0.33 -2.85 16 2 C 0.04 0.98 2.52 -92.93 -0.23 0.74 16 3 H 0.05 1.44 8.14 -51.93 -0.42 1.02 16 4 C -0.50 -14.89 8.37 -34.44 -0.29 -15.18 16 5 H 0.07 2.27 6.75 -52.49 -0.35 1.92 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.90 -25.98 11.32 55.43 0.63 -25.36 16 8 Si 0.90 22.45 29.54 -169.99 -5.02 17.42 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 C 0.55 13.66 7.40 -10.99 -0.08 13.58 16 13 O -0.55 -15.29 16.23 5.56 0.09 -15.20 16 14 N -0.65 -12.59 3.64 -185.07 -0.67 -13.26 16 15 C 0.11 1.70 6.29 -8.37 -0.05 1.65 16 16 C -0.12 -1.40 3.54 -89.99 -0.32 -1.72 16 17 C -0.13 -1.01 5.61 -27.88 -0.16 -1.17 16 18 C 0.52 5.00 8.10 -10.98 -0.09 4.91 16 19 N -0.86 -4.76 8.87 31.22 0.28 -4.48 16 20 O -0.53 -7.97 16.57 5.56 0.09 -7.88 16 21 C 0.10 1.45 8.19 -8.53 -0.07 1.38 16 22 H 0.01 0.29 6.33 -51.93 -0.33 -0.04 16 23 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 25 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.08 0.98 7.83 -51.93 -0.41 0.57 16 27 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.11 1.59 7.62 -51.93 -0.40 1.19 16 29 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.10 0.59 7.80 -51.93 -0.40 0.18 16 31 H 0.40 0.88 8.83 -40.82 -0.36 0.52 16 32 H 0.40 2.02 8.93 -40.82 -0.36 1.66 16 33 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 34 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 LS Contribution 288.95 15.07 4.35 4.35 Total: -1.00 -36.65 288.95 -5.91 -42.56 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -4.60 Total: -1.06 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -1.06 Total: 2.91 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.23 Total: -43.10 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: 0.18 Total: -23.08 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -36.65 -5.91 -42.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597597837.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.095 kcal (2) G-P(sol) polarization free energy of solvation -36.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds