Wall clock time and date at job start Mon Mar 30 2020 04:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47450 * 2 1 4 4 C 1.50694 * 109.47220 * 239.99983 * 2 1 3 5 5 H 1.08003 * 119.99970 * 239.99852 * 4 2 1 6 6 C 1.37880 * 120.00394 * 60.27204 * 4 2 1 7 7 N 1.31519 * 119.99616 * 359.72744 * 6 4 2 8 8 Si 1.86792 * 120.00247 * 179.72804 * 6 4 2 9 9 H 1.48500 * 109.47240 * 60.00056 * 8 6 4 10 10 H 1.48511 * 109.46927 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47293 * 299.99456 * 8 6 4 12 12 C 1.50696 * 109.47512 * 119.99705 * 2 1 3 13 13 O 1.21280 * 120.00143 * 84.73148 * 12 2 1 14 14 N 1.34778 * 120.00284 * 264.73700 * 12 2 1 15 15 C 1.47431 * 125.64545 * 4.81197 * 14 12 2 16 16 C 1.55135 * 104.72018 * 155.81708 * 15 14 12 17 17 C 1.55151 * 101.48512 * 37.29408 * 16 15 14 18 18 C 1.47023 * 125.65294 * 185.11459 * 14 12 2 19 19 H 1.08997 * 109.88106 * 300.44638 * 18 14 12 20 20 C 1.50699 * 109.87799 * 61.60367 * 18 14 12 21 21 N 1.34776 * 119.99942 * 180.02562 * 20 18 14 22 22 O 1.21277 * 120.00274 * 0.02562 * 20 18 14 23 23 H 1.09005 * 109.47410 * 293.72773 * 1 2 3 24 24 H 1.09000 * 109.47364 * 53.72728 * 1 2 3 25 25 H 1.09002 * 109.47421 * 173.73164 * 1 2 3 26 26 H 0.96997 * 120.00393 * 179.97438 * 7 6 4 27 27 H 1.09003 * 110.36332 * 274.74500 * 15 14 12 28 28 H 1.08989 * 110.36667 * 37.06652 * 15 14 12 29 29 H 1.08992 * 111.18987 * 279.18844 * 16 15 14 30 30 H 1.09003 * 110.93359 * 155.28611 * 16 15 14 31 31 H 1.09005 * 110.71931 * 205.96850 * 17 16 15 32 32 H 1.09000 * 110.87477 * 82.76922 * 17 16 15 33 33 H 0.97002 * 119.99905 * 0.02562 * 21 20 18 34 34 H 0.97005 * 120.00167 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.7039 -0.2361 -2.4827 7 7 0.9478 0.8332 -2.6034 8 14 2.3329 -1.1123 -4.0078 9 1 1.8385 -2.5126 -4.0135 10 1 1.8427 -0.4087 -5.2204 11 1 3.8178 -1.1115 -4.0021 12 6 2.0324 -0.7103 1.2304 13 8 2.1436 -1.9180 1.2305 14 7 2.3580 -0.0036 2.3309 15 6 2.1782 1.4496 2.5031 16 6 2.0944 1.6572 4.0382 17 6 3.1272 0.6174 4.5474 18 6 2.9571 -0.5529 3.5560 19 1 2.2986 -1.3087 3.9839 20 6 4.3010 -1.1583 3.2422 21 7 5.0311 -1.7237 4.2239 22 8 4.7255 -1.1368 2.1064 23 1 -0.3634 0.4135 0.9408 24 1 -0.3634 0.6080 -0.8285 25 1 -0.3634 -1.0215 -0.1122 26 1 0.7170 1.1671 -3.4844 27 1 3.0311 1.9888 2.0910 28 1 1.2547 1.7767 2.0255 29 1 1.0959 1.4316 4.4124 30 1 2.3922 2.6696 4.3111 31 1 2.8873 0.3007 5.5625 32 1 4.1392 1.0195 4.4994 33 1 4.6914 -1.7413 5.1323 34 1 5.8964 -2.1131 4.0220 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597726683.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:03 Heat of formation + Delta-G solvation = -106.633802 kcal Electronic energy + Delta-G solvation = -18001.153961 eV Core-core repulsion = 15125.475620 eV Total energy + Delta-G solvation = -2875.678341 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.56891 -39.72968 -38.02879 -35.79264 -34.75349 -32.96554 -31.82945 -30.27111 -27.31531 -25.60934 -24.00697 -22.64268 -21.53344 -20.07120 -18.48716 -18.42962 -17.99957 -17.62102 -16.87343 -16.27175 -15.75006 -15.57405 -15.20541 -14.70008 -14.46171 -14.19777 -13.88824 -13.62974 -13.21021 -12.97444 -12.79588 -12.61091 -12.59962 -12.31911 -12.09602 -12.04950 -11.73433 -11.12957 -11.02759 -10.65966 -10.63795 -10.32510 -9.57117 -8.20141 -6.30044 1.34582 1.37814 1.45956 1.64353 1.83265 2.19530 2.40922 2.69466 3.08784 3.53748 3.63372 4.00421 4.14798 4.26084 4.33981 4.58920 4.69065 4.79694 4.86654 4.91779 4.95109 5.02517 5.10828 5.32759 5.38531 5.51073 5.67708 5.87814 5.90945 6.14934 6.48759 6.64008 6.74475 7.33617 7.38846 7.52211 8.86419 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.030289 B = 0.007776 C = 0.006718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.197813 B = 3600.172067 C = 4167.189478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.035 3.965 3 H 0.034 0.966 4 C -0.530 4.530 5 H 0.031 0.969 6 C 0.023 3.977 7 N -0.907 5.907 8 Si 0.955 3.045 9 H -0.277 1.277 10 H -0.264 1.264 11 H -0.279 1.279 12 C 0.544 3.456 13 O -0.588 6.588 14 N -0.617 5.617 15 C 0.087 3.913 16 C -0.113 4.113 17 C -0.106 4.106 18 C 0.104 3.896 19 H 0.105 0.895 20 C 0.495 3.505 21 N -0.830 5.830 22 O -0.587 6.587 23 H 0.045 0.955 24 H 0.074 0.926 25 H 0.019 0.981 26 H 0.268 0.732 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.117 0.883 31 H 0.135 0.865 32 H 0.084 0.916 33 H 0.420 0.580 34 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.781 3.962 19.831 20.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.014 3.986 3 H 0.052 0.948 4 C -0.568 4.568 5 H 0.049 0.951 6 C -0.177 4.177 7 N -0.546 5.546 8 Si 0.780 3.220 9 H -0.202 1.202 10 H -0.188 1.188 11 H -0.205 1.205 12 C 0.336 3.664 13 O -0.467 6.467 14 N -0.352 5.352 15 C -0.035 4.035 16 C -0.151 4.151 17 C -0.144 4.144 18 C -0.003 4.003 19 H 0.122 0.878 20 C 0.279 3.721 21 N -0.396 5.396 22 O -0.465 6.465 23 H 0.064 0.936 24 H 0.093 0.907 25 H 0.038 0.962 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.113 0.887 30 H 0.136 0.864 31 H 0.153 0.847 32 H 0.102 0.898 33 H 0.253 0.747 34 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 2.827 3.515 18.849 19.381 hybrid contribution 0.726 -0.939 -1.054 1.588 sum 3.553 2.575 17.794 18.327 Atomic orbital electron populations 1.21467 0.94959 0.99808 1.00654 1.18729 0.95160 0.95562 0.89137 0.94803 1.21075 1.32030 1.12127 0.91555 0.95104 1.25568 0.95108 0.95771 1.01216 1.69932 1.36892 1.23206 1.24571 0.85666 0.78541 0.78828 0.78930 1.20243 1.18847 1.20485 1.21271 0.74534 0.86909 0.83685 1.90468 1.55862 1.16902 1.83491 1.48519 1.62251 1.10084 1.14311 1.22653 1.01677 0.79335 0.99835 1.22850 1.00701 1.01132 0.90414 1.22730 1.01212 0.92090 0.98378 1.21846 0.90911 0.99906 0.87653 0.87772 1.21550 0.88015 0.77641 0.84866 1.43531 1.23070 1.61188 1.11766 1.90809 1.72780 1.59093 1.23826 0.93602 0.90731 0.96179 0.92294 0.92603 0.90423 0.88666 0.86433 0.84668 0.89751 0.74743 0.76416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.64 8.86 71.98 0.64 -5.00 16 2 C 0.04 1.98 2.07 -12.29 -0.03 1.96 16 3 H 0.03 1.92 7.11 -2.38 -0.02 1.90 16 4 C -0.53 -33.80 8.31 25.60 0.21 -33.59 16 5 H 0.03 2.13 7.26 -2.91 -0.02 2.11 16 6 C 0.02 1.37 5.31 84.65 0.45 1.82 16 7 N -0.91 -53.46 11.40 21.45 0.24 -53.22 16 8 Si 0.96 47.99 29.54 68.60 2.03 50.01 16 9 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 10 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.28 -14.06 7.11 99.48 0.71 -13.36 16 12 C 0.54 28.64 5.88 87.66 0.52 29.15 16 13 O -0.59 -35.35 15.70 5.19 0.08 -35.27 16 14 N -0.62 -24.26 2.84 -791.75 -2.25 -26.50 16 15 C 0.09 2.58 6.18 86.93 0.54 3.11 16 16 C -0.11 -1.81 7.10 32.06 0.23 -1.58 16 17 C -0.11 -1.60 6.40 31.78 0.20 -1.40 16 18 C 0.10 3.01 3.23 44.59 0.14 3.15 16 19 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 20 C 0.50 16.71 6.97 87.66 0.61 17.32 16 21 N -0.83 -16.54 8.81 -173.54 -1.53 -18.07 16 22 O -0.59 -28.74 16.06 5.20 0.08 -28.66 16 23 H 0.05 1.93 8.05 -2.38 -0.02 1.91 16 24 H 0.07 4.00 6.27 -2.39 -0.01 3.98 16 25 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 27 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.08 2.37 7.58 -2.39 -0.02 2.35 16 29 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.14 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.08 1.23 7.84 -2.39 -0.02 1.21 16 33 H 0.42 4.25 8.82 -92.71 -0.82 3.43 16 34 H 0.40 7.60 8.93 -92.70 -0.83 6.77 16 Total: -1.00 -89.99 284.99 1.65 -88.34 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -0.52 Total: 8.41 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: 3.51 Total: 14.95 kcal Atomic # 7 Polarization: -94.26 SS G_CDS: -3.53 Total: -97.79 kcal Atomic # 8 Polarization: -64.09 SS G_CDS: 0.17 Total: -63.92 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.01 kcal Total: -89.99 1.65 -88.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597726683.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.294 kcal (2) G-P(sol) polarization free energy of solvation -89.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds