Wall clock time and date at job start Mon Mar 30 2020 04:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47138 * 2 1 4 4 C 1.50695 * 109.47381 * 239.99764 * 2 1 3 5 5 H 1.08004 * 120.00546 * 240.27913 * 4 2 1 6 6 C 1.37885 * 119.99721 * 60.00164 * 4 2 1 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46986 * 90.00256 * 8 6 4 10 10 H 1.48496 * 109.47029 * 210.00273 * 8 6 4 11 11 H 1.48499 * 109.47352 * 330.00102 * 8 6 4 12 12 C 1.50707 * 109.46672 * 120.00013 * 2 1 3 13 13 O 1.21282 * 119.99521 * 120.00502 * 12 2 1 14 14 N 1.34765 * 120.00198 * 300.00070 * 12 2 1 15 15 C 1.47050 * 121.35345 * 359.97438 * 14 12 2 16 16 C 1.50439 * 108.89105 * 222.71341 * 15 14 12 17 17 O 1.21290 * 118.48842 * 167.26947 * 16 15 14 18 18 N 1.33373 * 123.02374 * 347.29879 * 16 15 14 19 19 C 1.45644 * 124.59199 * 4.31524 * 18 16 15 20 20 H 1.08997 * 109.22310 * 98.43657 * 19 18 16 21 21 C 1.53005 * 109.21590 * 217.81225 * 19 18 16 22 22 C 1.47266 * 121.35605 * 179.71915 * 14 12 2 23 23 H 1.09005 * 109.47057 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47481 * 299.99642 * 1 2 3 25 25 H 1.08996 * 109.46841 * 60.00367 * 1 2 3 26 26 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 27 27 H 1.08996 * 109.56809 * 342.54150 * 15 14 12 28 28 H 1.09002 * 109.56440 * 102.89765 * 15 14 12 29 29 H 0.97007 * 117.70654 * 184.34210 * 18 16 15 30 30 H 1.09004 * 109.47117 * 59.99775 * 21 19 18 31 31 H 1.08999 * 109.47210 * 179.97438 * 21 19 18 32 32 H 1.08993 * 109.47065 * 299.99823 * 21 19 18 33 33 H 1.08996 * 109.72278 * 238.19106 * 22 14 12 34 34 H 1.09000 * 109.72048 * 358.84597 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6496 -1.5912 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 1.3449 -2.1615 -4.4124 10 1 2.4875 -0.1402 -5.1119 11 1 3.6310 -1.7566 -3.7119 12 6 2.0323 -0.7105 1.2306 13 8 2.7296 -1.6965 1.1192 14 7 1.7066 -0.2501 2.4546 15 6 0.8638 0.9429 2.6240 16 6 1.4425 1.7966 3.7192 17 8 1.0287 2.9292 3.8498 18 7 2.3901 1.3655 4.5529 19 6 3.0447 0.0677 4.4607 20 1 4.0036 0.1845 3.9559 21 6 3.2810 -0.4784 5.8703 22 6 2.1758 -0.9245 3.6768 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.7097 1.1618 -3.4844 27 1 0.8412 1.5092 1.6930 28 1 -0.1479 0.6398 2.8936 29 1 2.6622 1.9578 5.2714 30 1 2.3252 -0.5866 6.3830 31 1 3.7705 -1.4502 5.8061 32 1 3.9152 0.2122 6.4259 33 1 1.3208 -1.2259 4.2819 34 1 2.7655 -1.8014 3.4097 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597728213.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:08 Heat of formation + Delta-G solvation = -67.744029 kcal Electronic energy + Delta-G solvation = -17850.609957 eV Core-core repulsion = 14976.618003 eV Total energy + Delta-G solvation = -2873.991954 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.50381 -38.60921 -36.59909 -34.41796 -33.70054 -31.31815 -30.44760 -27.73962 -26.29185 -25.18357 -22.66314 -22.16288 -19.81102 -18.76212 -17.05262 -17.04267 -16.22369 -15.62417 -15.41338 -15.11057 -14.53929 -14.42371 -13.84447 -13.32538 -13.11217 -12.62104 -12.52597 -12.21954 -12.03956 -11.65365 -11.54591 -11.35950 -11.02953 -10.73943 -10.61657 -10.33062 -10.08396 -9.98695 -9.17697 -9.01957 -8.71776 -8.38466 -8.29645 -6.05702 -4.09619 2.64436 3.08477 3.32558 3.38159 3.39969 3.46592 3.53971 4.44010 4.49678 4.59705 4.88185 4.96890 5.27233 5.28600 5.39022 5.51598 5.56069 5.67523 5.73601 5.92552 6.02464 6.53853 6.61086 6.76036 6.80952 6.90574 7.28583 7.39080 7.65813 7.84148 8.01970 8.19378 8.29445 8.97354 9.03384 9.55979 11.01863 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.035736 B = 0.006776 C = 0.006037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.328560 B = 4131.042903 C = 4637.003974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.029 3.971 3 H 0.054 0.946 4 C -0.503 4.503 5 H 0.074 0.926 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.528 3.472 13 O -0.536 6.536 14 N -0.633 5.633 15 C 0.100 3.900 16 C 0.513 3.487 17 O -0.553 6.553 18 N -0.714 5.714 19 C 0.121 3.879 20 H 0.079 0.921 21 C -0.161 4.161 22 C 0.099 3.901 23 H 0.032 0.968 24 H 0.021 0.979 25 H 0.095 0.905 26 H 0.262 0.738 27 H 0.134 0.866 28 H 0.100 0.900 29 H 0.395 0.605 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.218 -1.129 14.548 14.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.008 3.992 3 H 0.071 0.929 4 C -0.542 4.542 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.321 3.679 13 O -0.411 6.411 14 N -0.371 5.371 15 C -0.026 4.026 16 C 0.300 3.700 17 O -0.431 6.431 18 N -0.367 5.367 19 C 0.015 3.985 20 H 0.097 0.903 21 C -0.220 4.220 22 C -0.024 4.024 23 H 0.052 0.948 24 H 0.040 0.960 25 H 0.114 0.886 26 H 0.072 0.928 27 H 0.152 0.848 28 H 0.118 0.882 29 H 0.230 0.770 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.245 -1.142 14.158 14.258 hybrid contribution 0.398 -0.192 -0.423 0.612 sum 1.644 -1.334 13.735 13.897 Atomic orbital electron populations 1.21999 0.96352 1.00212 1.01623 1.18899 0.94357 0.96825 0.89080 0.92854 1.21108 1.31393 1.12786 0.88876 0.90750 1.24955 0.95045 0.95045 0.99144 1.69865 1.36892 1.22921 1.23679 0.86436 0.79435 0.79233 0.82018 1.20636 1.21263 1.19755 1.22132 0.77954 0.84076 0.83768 1.90533 1.37874 1.26865 1.85847 1.48528 1.53288 1.29128 1.06175 1.22050 0.94857 0.86437 0.99245 1.20649 0.78907 0.87694 0.82799 1.90772 1.60577 1.19194 1.72545 1.45577 1.40047 1.18636 1.32401 1.21456 0.96735 0.83194 0.97069 0.90315 1.22118 1.02635 1.02072 0.95127 1.21956 0.98444 0.96036 0.86004 0.94845 0.95974 0.88630 0.92845 0.84820 0.88239 0.76996 0.91739 0.90512 0.91827 0.91072 0.87346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.54 37.16 0.32 -2.90 16 2 C 0.03 0.71 1.84 -92.92 -0.17 0.54 16 3 H 0.05 1.36 7.56 -51.93 -0.39 0.97 16 4 C -0.50 -14.04 8.37 -34.44 -0.29 -14.33 16 5 H 0.07 2.18 6.75 -52.48 -0.35 1.83 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -24.88 11.32 55.43 0.63 -24.25 16 8 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 12 C 0.53 11.65 7.11 -10.99 -0.08 11.57 16 13 O -0.54 -13.29 14.94 5.56 0.08 -13.21 16 14 N -0.63 -10.78 2.97 -173.89 -0.52 -11.30 16 15 C 0.10 1.57 4.80 -5.02 -0.02 1.54 16 16 C 0.51 7.89 7.84 -11.74 -0.09 7.80 16 17 O -0.55 -10.22 17.80 5.55 0.10 -10.12 16 18 N -0.71 -8.69 5.12 -54.56 -0.28 -8.97 16 19 C 0.12 1.32 3.86 -68.17 -0.26 1.05 16 20 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 21 C -0.16 -1.18 9.33 37.16 0.35 -0.83 16 22 C 0.10 1.30 5.85 -3.40 -0.02 1.28 16 23 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.02 0.40 4.83 -51.93 -0.25 0.15 16 25 H 0.10 2.37 6.07 -51.93 -0.32 2.06 16 26 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 27 H 0.13 2.32 5.29 -51.93 -0.27 2.05 16 28 H 0.10 1.36 7.78 -51.93 -0.40 0.95 16 29 H 0.39 4.13 8.61 -40.82 -0.35 3.78 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 34 H 0.11 1.52 7.06 -51.93 -0.37 1.15 16 LS Contribution 276.95 15.07 4.17 4.17 Total: -1.00 -32.18 276.95 -5.58 -37.76 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -4.38 Total: 2.08 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: -0.37 Total: 7.26 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: -0.17 Total: -44.52 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: 0.18 Total: -23.33 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -32.18 -5.58 -37.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597728213.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.979 kcal (2) G-P(sol) polarization free energy of solvation -32.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds