Wall clock time and date at job start Mon Mar 30 2020 04:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47131 * 2 1 4 4 C 1.50693 * 109.47169 * 119.99860 * 2 1 3 5 5 H 1.08008 * 119.99924 * 119.99777 * 4 2 1 6 6 C 1.37875 * 120.00294 * 300.00207 * 4 2 1 7 7 N 1.31505 * 120.00095 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99949 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47183 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46973 * 120.00058 * 8 6 4 11 11 H 1.48499 * 109.47472 * 240.00005 * 8 6 4 12 12 C 1.50702 * 109.47171 * 240.00376 * 2 1 3 13 13 O 1.21274 * 119.99910 * 270.97195 * 12 2 1 14 14 N 1.34777 * 119.99999 * 90.96775 * 12 2 1 15 15 C 1.46797 * 127.03144 * 4.53998 * 14 12 2 16 16 N 1.46226 * 108.05644 * 179.97438 * 15 14 12 17 17 C 1.46496 * 124.85385 * 180.02562 * 16 15 14 18 18 C 1.34304 * 110.28978 * 359.97438 * 16 15 14 19 19 O 1.21284 * 125.42365 * 179.97438 * 18 16 15 20 20 C 1.46981 * 127.02906 * 184.21573 * 14 12 2 21 21 H 1.08999 * 110.03582 * 60.72915 * 20 14 12 22 22 C 1.53000 * 110.04331 * 299.28303 * 20 14 12 23 23 H 1.08996 * 109.47029 * 301.08726 * 1 2 3 24 24 H 1.09005 * 109.46811 * 61.09034 * 1 2 3 25 25 H 1.09000 * 109.46733 * 181.08463 * 1 2 3 26 26 H 0.96999 * 120.00479 * 180.02562 * 7 6 4 27 27 H 1.08997 * 109.75465 * 299.65236 * 15 14 12 28 28 H 1.09001 * 109.75507 * 60.34752 * 15 14 12 29 29 H 1.09004 * 109.47194 * 90.00197 * 17 16 15 30 30 H 1.09001 * 109.47026 * 209.99416 * 17 16 15 31 31 H 1.08997 * 109.47181 * 329.99841 * 17 16 15 32 32 H 1.08996 * 109.47019 * 59.99806 * 22 20 14 33 33 H 1.08997 * 109.47096 * 179.97438 * 22 20 14 34 34 H 1.09004 * 109.47021 * 299.99810 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3214 -1.1204 4.0078 9 1 3.1466 -2.2870 3.6036 10 1 3.1467 -0.1874 4.8164 11 1 1.1662 -1.5868 4.8160 12 6 2.0324 -0.7103 -1.2305 13 8 2.2177 -1.9086 -1.2058 14 7 2.2756 -0.0140 -2.3585 15 6 2.1947 1.4412 -2.5339 16 7 2.5424 1.7507 -3.9201 17 6 2.5791 3.0984 -4.4932 18 6 2.8244 0.6228 -4.5925 19 8 3.1454 0.5622 -5.7605 20 6 2.6825 -0.5557 -3.6628 21 1 1.9191 -1.2367 -4.0390 22 6 4.0201 -1.2871 -3.5327 23 1 -0.3633 0.5306 0.8800 24 1 -0.3633 0.4968 -0.8997 25 1 -0.3633 -1.0275 0.0195 26 1 0.7088 1.1612 3.4844 27 1 1.1810 1.7819 -2.3232 28 1 2.8961 1.9332 -1.8600 29 1 3.5767 3.5195 -4.3681 30 1 2.3364 3.0486 -5.5547 31 1 1.8515 3.7299 -3.9834 32 1 3.9186 -2.1060 -2.8205 33 1 4.3126 -1.6852 -4.5043 34 1 4.7818 -0.5915 -3.1803 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597814738.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:17 Heat of formation + Delta-G solvation = -74.608442 kcal Electronic energy + Delta-G solvation = -17799.459705 eV Core-core repulsion = 14925.170087 eV Total energy + Delta-G solvation = -2874.289617 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.19042 -40.09762 -37.80894 -35.86578 -35.33001 -33.03511 -31.50247 -29.02165 -27.26397 -26.91556 -25.28984 -23.56645 -21.17873 -20.56011 -18.43462 -18.09316 -17.77022 -16.93474 -16.79312 -16.52960 -16.10128 -15.70527 -15.04413 -14.92417 -14.52675 -14.39950 -13.94056 -13.51991 -13.36785 -13.26750 -13.18136 -12.96884 -12.78621 -12.61360 -12.55066 -12.25932 -12.07265 -11.26781 -11.06758 -10.61855 -10.39219 -10.35357 -9.57860 -8.15732 -6.25988 1.21751 1.41642 1.44786 1.50803 1.58216 1.76076 1.90335 2.45897 3.02054 3.15010 3.65387 3.96946 4.13382 4.17149 4.28834 4.36442 4.51789 4.65058 4.68393 4.74170 4.86929 4.88084 4.94803 5.03961 5.08815 5.24211 5.47515 5.70903 5.82153 5.91717 6.14893 6.42799 6.78077 6.84808 7.25580 7.42842 8.90111 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.036590 B = 0.006602 C = 0.006045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.048410 B = 4239.968666 C = 4630.586268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.037 3.963 3 H 0.052 0.948 4 C -0.529 4.529 5 H 0.044 0.956 6 C 0.027 3.973 7 N -0.906 5.906 8 Si 0.952 3.048 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.277 1.277 12 C 0.557 3.443 13 O -0.566 6.566 14 N -0.634 5.634 15 C 0.329 3.671 16 N -0.620 5.620 17 C 0.096 3.904 18 C 0.527 3.473 19 O -0.546 6.546 20 C 0.096 3.904 21 H 0.105 0.895 22 C -0.142 4.142 23 H 0.078 0.922 24 H 0.046 0.954 25 H 0.020 0.980 26 H 0.267 0.733 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.397 6.699 -10.041 12.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.015 3.985 3 H 0.070 0.930 4 C -0.567 4.567 5 H 0.063 0.937 6 C -0.173 4.173 7 N -0.544 5.544 8 Si 0.778 3.222 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.203 1.203 12 C 0.350 3.650 13 O -0.443 6.443 14 N -0.372 5.372 15 C 0.121 3.879 16 N -0.354 5.354 17 C -0.044 4.044 18 C 0.313 3.687 19 O -0.424 6.424 20 C -0.011 4.011 21 H 0.122 0.878 22 C -0.200 4.200 23 H 0.096 0.904 24 H 0.065 0.935 25 H 0.039 0.961 26 H 0.076 0.924 27 H 0.119 0.881 28 H 0.111 0.889 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.125 0.875 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.553 6.208 -10.432 12.239 hybrid contribution 0.253 -0.599 0.902 1.112 sum 1.805 5.609 -9.531 11.205 Atomic orbital electron populations 1.21541 0.95000 0.99622 1.01565 1.18840 0.95077 0.96380 0.88166 0.93042 1.21185 1.32064 1.12485 0.90956 0.93748 1.25485 0.95051 0.95635 1.01138 1.69913 1.36766 1.23329 1.24442 0.85593 0.78323 0.78654 0.79622 1.20518 1.19812 1.20252 1.21415 0.74348 0.86806 0.82475 1.90545 1.53333 1.16896 1.83515 1.48605 1.70540 1.08149 1.09918 1.21615 1.03090 0.80805 0.82415 1.48412 1.67370 1.08451 1.11190 1.21870 1.04105 0.78759 0.99647 1.20380 0.75918 0.85535 0.86860 1.90717 1.49409 1.86328 1.15946 1.21479 1.00090 0.95557 0.83974 0.87765 1.21838 0.94019 1.00633 1.03538 0.90350 0.93548 0.96066 0.92412 0.88056 0.88867 0.90797 0.90360 0.87472 0.91797 0.89557 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.24 8.94 71.98 0.64 -4.60 16 2 C 0.04 1.70 2.31 -12.29 -0.03 1.67 16 3 H 0.05 2.32 7.20 -2.39 -0.02 2.31 16 4 C -0.53 -28.77 8.32 25.60 0.21 -28.56 16 5 H 0.04 2.60 7.16 -2.91 -0.02 2.58 16 6 C 0.03 1.42 5.30 84.66 0.45 1.87 16 7 N -0.91 -47.67 11.33 21.44 0.24 -47.43 16 8 Si 0.95 42.74 29.54 68.60 2.03 44.77 16 9 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 10 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 11 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 12 C 0.56 24.26 6.75 87.66 0.59 24.85 16 13 O -0.57 -28.56 15.00 -3.01 -0.05 -28.61 16 14 N -0.63 -21.59 3.10 -812.09 -2.52 -24.11 16 15 C 0.33 8.44 6.76 170.95 1.16 9.60 16 16 N -0.62 -14.61 3.33 -859.42 -2.86 -17.47 16 17 C 0.10 1.47 11.01 127.77 1.41 2.87 16 18 C 0.53 15.44 7.43 87.75 0.65 16.09 16 19 O -0.55 -18.50 17.67 -3.04 -0.05 -18.55 16 20 C 0.10 3.01 3.64 44.18 0.16 3.17 16 21 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 22 C -0.14 -4.36 9.30 71.98 0.67 -3.69 16 23 H 0.08 3.75 6.10 -2.39 -0.01 3.73 16 24 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 25 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.27 13.28 8.31 -92.71 -0.77 12.51 16 27 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.09 2.26 8.00 -2.39 -0.02 2.24 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 1.25 7.98 -2.39 -0.02 1.23 16 31 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 2.26 6.80 -2.39 -0.02 2.25 16 33 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -65.49 287.73 3.79 -61.70 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: 1.09 Total: 6.41 kcal Atomic # 6 Polarization: 17.38 SS G_CDS: 5.91 Total: 23.29 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -5.14 Total: -89.01 kcal Atomic # 8 Polarization: -47.06 SS G_CDS: -0.10 Total: -47.16 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -65.49 3.79 -61.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597814738.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.907 kcal (2) G-P(sol) polarization free energy of solvation -65.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds