Wall clock time and date at job start Mon Mar 30 2020 03:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00218 * 2 1 4 4 C 1.52992 * 109.47268 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46877 * 65.00216 * 4 3 2 6 6 C 1.36939 * 119.99626 * 264.42654 * 5 4 3 7 7 H 1.08002 * 119.99816 * 146.16884 * 6 5 4 8 8 C 1.38810 * 120.00128 * 326.16139 * 6 5 4 9 9 N 1.31619 * 120.00168 * 337.63404 * 8 6 5 10 10 Si 1.86802 * 119.99836 * 157.63135 * 8 6 5 11 11 H 1.48500 * 109.47057 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47381 * 120.00549 * 10 8 6 13 13 H 1.48502 * 109.46888 * 240.00485 * 10 8 6 14 14 C 1.46494 * 120.00228 * 84.42593 * 5 4 3 15 15 C 1.50710 * 109.47181 * 90.00063 * 14 5 4 16 16 C 1.34322 * 126.44304 * 90.02230 * 15 14 5 17 17 N 1.34475 * 107.67010 * 180.02562 * 16 15 14 18 18 C 1.30255 * 108.69941 * 359.97438 * 17 16 15 19 19 C 1.50705 * 125.62127 * 179.97438 * 18 17 16 20 20 O 1.33969 * 108.76113 * 0.02562 * 18 17 16 21 21 H 1.09004 * 109.46918 * 299.99984 * 1 2 3 22 22 H 1.08999 * 109.47264 * 59.99830 * 1 2 3 23 23 H 1.08997 * 109.47238 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46816 * 59.99683 * 3 2 1 25 25 H 1.09004 * 109.46611 * 300.00404 * 3 2 1 26 26 H 1.08997 * 109.47740 * 305.00265 * 4 3 2 27 27 H 1.09003 * 109.47349 * 184.99471 * 4 3 2 28 28 H 0.97006 * 120.00006 * 179.97438 * 9 8 6 29 29 H 1.08997 * 109.47442 * 330.00243 * 14 5 4 30 30 H 1.09000 * 109.47543 * 209.99475 * 14 5 4 31 31 H 1.08003 * 126.17172 * 359.95954 * 16 15 14 32 32 H 1.09000 * 109.46874 * 270.02917 * 19 18 17 33 33 H 1.08992 * 109.46952 * 30.02769 * 19 18 17 34 34 H 1.08997 * 109.47128 * 150.02899 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2510 6 6 4.2076 -0.7849 -1.3020 7 1 3.9968 -1.3349 -2.2072 8 6 4.7129 -1.4451 -0.1905 9 7 5.3727 -0.7743 0.7299 10 14 4.4565 -3.2857 -0.0008 11 1 3.6886 -3.8008 -1.1628 12 1 5.7753 -3.9653 0.0623 13 1 3.7011 -3.5540 1.2492 14 6 4.1706 1.3862 -2.4478 15 6 5.5918 1.8861 -2.4888 16 6 6.6372 1.2723 -3.0672 17 7 7.7206 2.0463 -2.8784 18 6 7.3657 3.1049 -2.2076 19 6 8.2816 4.2254 -1.7872 20 8 6.0526 3.0330 -1.9521 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 1.6886 1.8463 0.8900 25 1 1.6886 1.8463 -0.8900 26 1 3.8508 0.5685 0.8426 27 1 3.9785 2.1765 0.0901 28 1 5.7255 -1.2356 1.5069 29 1 3.4875 2.2351 -2.4201 30 1 3.9704 0.7875 -3.3364 31 1 6.6125 0.3268 -3.5888 32 1 8.7002 4.0035 -0.8055 33 1 9.0891 4.3260 -2.5122 34 1 7.7178 5.1571 -1.7396 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600169687.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:48 Heat of formation + Delta-G solvation = -0.237452 kcal Electronic energy + Delta-G solvation = -17683.600187 eV Core-core repulsion = 14812.535538 eV Total energy + Delta-G solvation = -2871.064649 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.38939 -37.30316 -35.49960 -33.87969 -32.11220 -31.10462 -29.44806 -27.51206 -25.71826 -24.81115 -23.00650 -21.61136 -20.60809 -19.88740 -16.90908 -16.13479 -16.01916 -15.65855 -15.13487 -14.74381 -14.09712 -13.82486 -13.63402 -13.53114 -13.16706 -12.67463 -12.42517 -12.24629 -11.82615 -11.50994 -11.18913 -10.90168 -10.84786 -10.71509 -10.43626 -10.28383 -10.03472 -9.82191 -9.71635 -8.90538 -8.51537 -7.81553 -6.76304 -5.83225 -3.34752 2.31912 3.39300 3.47446 3.49374 3.51673 3.55371 4.50090 4.61984 4.76465 5.31487 5.40963 5.52177 5.65484 5.70383 5.75573 5.78766 5.82898 6.01946 6.02797 6.09104 6.19200 6.23977 6.31377 6.57636 6.65861 6.72447 6.93722 7.19153 7.59633 7.78203 7.99073 8.44232 8.55805 9.09092 9.73116 10.25078 11.19551 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.021485 B = 0.008631 C = 0.006934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.891785 B = 3243.192653 C = 4037.244515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.357 6.357 3 C 0.048 3.952 4 C 0.140 3.860 5 N -0.557 5.557 6 C -0.249 4.249 7 H 0.066 0.934 8 C 0.019 3.981 9 N -0.885 5.885 10 Si 0.904 3.096 11 H -0.275 1.275 12 H -0.293 1.293 13 H -0.287 1.287 14 C 0.215 3.785 15 C -0.027 4.027 16 C -0.054 4.054 17 N -0.485 5.485 18 C 0.145 3.855 19 C -0.046 4.046 20 O -0.208 6.208 21 H 0.027 0.973 22 H 0.030 0.970 23 H 0.075 0.925 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.111 0.889 27 H 0.040 0.960 28 H 0.255 0.745 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.172 0.828 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.389 7.594 -2.905 8.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.275 6.275 3 C -0.031 4.031 4 C 0.014 3.986 5 N -0.275 5.275 6 C -0.379 4.379 7 H 0.084 0.916 8 C -0.182 4.182 9 N -0.527 5.527 10 Si 0.734 3.266 11 H -0.200 1.200 12 H -0.220 1.220 13 H -0.214 1.214 14 C 0.087 3.913 15 C -0.084 4.084 16 C -0.193 4.193 17 N -0.216 5.216 18 C -0.061 4.061 19 C -0.104 4.104 20 O -0.094 6.094 21 H 0.045 0.955 22 H 0.048 0.952 23 H 0.094 0.906 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.128 0.872 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.190 0.810 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.636 7.274 -2.905 8.264 hybrid contribution -0.877 -0.698 0.553 1.250 sum -3.513 6.576 -2.351 7.818 Atomic orbital electron populations 1.22641 0.84033 1.01576 0.98507 1.88197 1.16750 1.27703 1.94863 1.23342 0.98403 0.84161 0.97175 1.21121 0.87576 0.97201 0.92746 1.44105 1.73122 1.04036 1.06238 1.19039 1.36926 0.81880 1.00009 0.91586 1.25085 0.96103 0.98182 0.98810 1.69995 1.34952 1.35628 1.12159 0.86216 0.77229 0.85161 0.78025 1.19982 1.21975 1.21355 1.19876 0.84224 0.93804 0.93444 1.25797 1.01810 0.84349 0.96396 1.22757 0.87684 1.01726 1.07138 1.70230 1.31237 1.03402 1.16704 1.25901 0.81583 0.98410 1.00242 1.20023 0.95715 0.92092 1.02532 1.84369 1.24551 1.38705 1.61821 0.95465 0.95189 0.90632 0.95323 0.95274 0.87197 0.94126 0.93521 0.92846 0.89815 0.81043 0.89863 0.89102 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.59 16 2 O -0.36 -7.65 10.44 -35.23 -0.37 -8.01 16 3 C 0.05 0.95 6.28 37.15 0.23 1.19 16 4 C 0.14 3.26 5.63 -4.04 -0.02 3.24 16 5 N -0.56 -13.52 2.39 -174.61 -0.42 -13.93 16 6 C -0.25 -6.66 9.28 -15.06 -0.14 -6.80 16 7 H 0.07 1.75 7.92 -52.49 -0.42 1.33 16 8 C 0.02 0.52 4.91 -17.43 -0.09 0.43 16 9 N -0.89 -25.67 11.34 55.49 0.63 -25.04 16 10 Si 0.90 22.10 29.61 -169.99 -5.03 17.07 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 C 0.22 4.44 6.24 -5.19 -0.03 4.41 16 15 C -0.03 -0.58 6.97 -35.69 -0.25 -0.83 16 16 C -0.05 -1.18 11.80 -17.78 -0.21 -1.39 16 17 N -0.48 -10.49 11.29 -11.10 -0.13 -10.62 16 18 C 0.15 2.83 8.34 -12.94 -0.11 2.72 16 19 C -0.05 -0.60 10.51 36.01 0.38 -0.23 16 20 O -0.21 -4.42 10.78 5.37 0.06 -4.37 16 21 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 22 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 26 H 0.11 2.96 5.34 -51.93 -0.28 2.69 16 27 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 28 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.05 0.98 8.05 -51.93 -0.42 0.57 16 30 H 0.08 1.60 8.04 -51.93 -0.42 1.18 16 31 H 0.17 3.54 8.06 -52.48 -0.42 3.11 16 32 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 297.10 15.07 4.48 4.48 Total: -1.00 -32.28 297.10 -4.79 -37.07 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -4.89 Total: -0.98 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 0.88 Total: 4.33 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: 0.09 Total: -49.59 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -0.31 Total: -12.38 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.28 -4.79 -37.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600169687.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.836 kcal (2) G-P(sol) polarization free energy of solvation -32.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds