Wall clock time and date at job start Mon Mar 30 2020 04:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46781 * 2 1 4 4 C 1.50697 * 109.47304 * 239.99998 * 2 1 3 5 5 H 1.07989 * 120.00352 * 240.00054 * 4 2 1 6 6 C 1.37879 * 119.99915 * 59.99979 * 4 2 1 7 7 N 1.31522 * 119.99826 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00166 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46889 * 90.00047 * 8 6 4 10 10 H 1.48496 * 109.47314 * 209.99815 * 8 6 4 11 11 H 1.48501 * 109.47150 * 330.00185 * 8 6 4 12 12 C 1.50693 * 109.47239 * 119.99762 * 2 1 3 13 13 O 1.21281 * 119.99835 * 120.00123 * 12 2 1 14 14 N 1.34776 * 120.00109 * 300.00581 * 12 2 1 15 15 C 1.46506 * 119.99831 * 179.97438 * 14 12 2 16 16 H 1.08997 * 112.85420 * 23.80069 * 15 14 12 17 17 C 1.53781 * 113.61405 * 154.99784 * 15 14 12 18 18 C 1.53786 * 87.17350 * 140.02258 * 17 15 14 19 19 H 1.09000 * 113.61138 * 220.06261 * 18 17 15 20 20 C 1.50697 * 113.61613 * 89.15662 * 18 17 15 21 21 N 1.34774 * 119.99787 * 180.02562 * 20 18 17 22 22 O 1.21277 * 120.00025 * 0.02562 * 20 18 17 23 23 C 1.53782 * 113.68817 * 252.53351 * 15 14 12 24 24 H 1.08997 * 109.47085 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47234 * 299.99995 * 1 2 3 26 26 H 1.09004 * 109.47185 * 59.99930 * 1 2 3 27 27 H 0.97006 * 119.99433 * 180.02562 * 7 6 4 28 28 H 0.96990 * 120.00286 * 359.97438 * 14 12 2 29 29 H 1.09002 * 113.61445 * 254.61257 * 17 15 14 30 30 H 1.09002 * 113.61408 * 25.42988 * 17 15 14 31 31 H 0.96998 * 120.00410 * 359.97438 * 21 20 18 32 32 H 0.96999 * 119.99773 * 180.02562 * 21 20 18 33 33 H 1.08997 * 113.61668 * 334.55345 * 23 15 14 34 34 H 1.08998 * 113.61674 * 105.37854 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6033 8 14 2.3226 -1.1194 -4.0079 9 1 1.3448 -2.1615 -4.4124 10 1 2.4873 -0.1401 -5.1120 11 1 3.6309 -1.7564 -3.7119 12 6 2.0324 -0.7103 1.2304 13 8 2.7296 -1.6964 1.1191 14 7 1.7067 -0.2499 2.4545 15 6 2.1946 -0.9409 3.6507 16 1 3.0998 -1.5193 3.4659 17 6 2.2843 -0.0363 4.8911 18 6 1.7508 -1.2275 5.7044 19 1 1.0285 -0.9447 6.4702 20 6 2.8341 -2.1357 6.2263 21 7 2.5096 -3.2213 6.9562 22 8 3.9978 -1.8899 5.9896 23 6 1.1042 -1.7256 4.3989 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 0.7081 1.1609 -3.4844 28 1 1.1493 0.5388 2.5436 29 1 3.3039 0.2483 5.1512 30 1 1.6021 0.8133 4.8622 31 1 1.5788 -3.4178 7.1458 32 1 3.2069 -3.8057 7.2925 33 1 0.0983 -1.3387 4.2362 34 1 1.1701 -2.8048 4.2606 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600315590.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:11 Heat of formation + Delta-G solvation = -97.064171 kcal Electronic energy + Delta-G solvation = -17150.469496 eV Core-core repulsion = 14275.206125 eV Total energy + Delta-G solvation = -2875.263371 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.63351 -40.27754 -38.26521 -35.75171 -34.70505 -34.18675 -32.22294 -27.27314 -26.98089 -26.66605 -24.43105 -22.62773 -21.18784 -20.20934 -18.47146 -18.04726 -17.95111 -17.66887 -16.99399 -16.45956 -15.91296 -15.67922 -15.48343 -14.90193 -14.51635 -14.11417 -13.64392 -13.39444 -13.17264 -13.02481 -12.95055 -12.64218 -12.56355 -12.19784 -12.03203 -11.73857 -11.57260 -11.02526 -10.95394 -10.66385 -10.58071 -10.26063 -9.86504 -8.14717 -6.24743 1.40133 1.40630 1.52961 1.57842 1.94054 2.38055 2.57438 2.59729 3.14484 3.46425 3.50978 3.87430 3.96121 4.29171 4.38961 4.64556 4.76218 4.78123 4.88692 4.94012 4.98566 5.05658 5.06038 5.25030 5.52494 5.69711 5.78269 5.89933 5.97651 6.24263 6.47643 6.77762 6.90266 7.36294 7.41054 7.59488 8.90920 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.048174 B = 0.004924 C = 0.004695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.083567 B = 5685.235076 C = 5961.755783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.022 3.978 3 H 0.041 0.959 4 C -0.531 4.531 5 H 0.044 0.956 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.954 3.046 9 H -0.272 1.272 10 H -0.273 1.273 11 H -0.282 1.282 12 C 0.519 3.481 13 O -0.594 6.594 14 N -0.711 5.711 15 C 0.100 3.900 16 H 0.065 0.935 17 C -0.118 4.118 18 C -0.121 4.121 19 H 0.156 0.844 20 C 0.523 3.477 21 N -0.834 5.834 22 O -0.594 6.594 23 C -0.122 4.122 24 H 0.022 0.978 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.265 0.735 28 H 0.413 0.587 29 H 0.066 0.934 30 H 0.128 0.872 31 H 0.420 0.580 32 H 0.406 0.594 33 H 0.123 0.877 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.935 -2.079 19.862 20.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.001 3.999 3 H 0.059 0.941 4 C -0.569 4.569 5 H 0.062 0.938 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.780 3.220 9 H -0.198 1.198 10 H -0.198 1.198 11 H -0.208 1.208 12 C 0.308 3.692 13 O -0.474 6.474 14 N -0.363 5.363 15 C -0.006 4.006 16 H 0.084 0.916 17 C -0.156 4.156 18 C -0.143 4.143 19 H 0.173 0.827 20 C 0.309 3.691 21 N -0.397 5.397 22 O -0.475 6.475 23 C -0.161 4.161 24 H 0.042 0.958 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.251 0.749 29 H 0.084 0.916 30 H 0.146 0.854 31 H 0.252 0.748 32 H 0.237 0.763 33 H 0.142 0.858 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.856 -2.358 19.408 20.145 hybrid contribution 0.372 -0.579 -0.844 1.089 sum -4.484 -2.937 18.564 19.322 Atomic orbital electron populations 1.21534 0.94561 0.99462 1.01918 1.18833 0.95725 0.95808 0.89524 0.94128 1.21288 1.31574 1.12669 0.91364 0.93782 1.25571 0.95221 0.95754 1.01304 1.69947 1.37192 1.23472 1.24286 0.85620 0.78549 0.78624 0.79227 1.19782 1.19799 1.20754 1.21650 0.77922 0.83609 0.86024 1.90507 1.40173 1.29126 1.87630 1.45935 1.53767 1.32260 1.04360 1.22608 0.97726 0.96198 0.84041 0.91635 1.23252 1.03091 0.97184 0.92061 1.22221 0.97269 0.95976 0.98790 0.82662 1.20630 0.89403 0.82121 0.76961 1.43663 1.13781 1.27156 1.55106 1.90752 1.22790 1.74323 1.59622 1.23426 0.99928 1.00575 0.92210 0.95848 0.92423 0.91180 0.92572 0.74948 0.91565 0.85414 0.74836 0.76287 0.85843 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.24 8.87 71.98 0.64 -4.60 16 2 C 0.02 1.14 2.64 -12.29 -0.03 1.11 16 3 H 0.04 2.15 8.14 -2.38 -0.02 2.13 16 4 C -0.53 -31.57 8.37 25.60 0.21 -31.36 16 5 H 0.04 2.83 6.75 -2.92 -0.02 2.81 16 6 C 0.02 1.18 5.30 84.65 0.45 1.62 16 7 N -0.91 -51.46 11.32 21.45 0.24 -51.21 16 8 Si 0.95 45.81 29.54 68.60 2.03 47.83 16 9 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -13.88 7.11 99.48 0.71 -13.18 16 12 C 0.52 24.66 7.15 87.65 0.63 25.29 16 13 O -0.59 -33.68 15.06 -3.03 -0.05 -33.73 16 14 N -0.71 -24.28 5.25 -440.03 -2.31 -26.59 16 15 C 0.10 3.03 3.89 45.52 0.18 3.21 16 16 H 0.07 2.66 7.40 -2.39 -0.02 2.65 16 17 C -0.12 -2.50 7.20 31.12 0.22 -2.28 16 18 C -0.12 -1.98 4.35 -10.95 -0.05 -2.03 16 19 H 0.16 1.11 8.14 -2.39 -0.02 1.09 16 20 C 0.52 11.47 7.36 87.66 0.65 12.11 16 21 N -0.83 -10.44 8.87 -173.54 -1.54 -11.98 16 22 O -0.59 -19.88 16.59 -3.02 -0.05 -19.93 16 23 C -0.12 -2.52 7.46 31.18 0.23 -2.29 16 24 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.06 2.01 7.56 -2.39 -0.02 1.99 16 26 H 0.07 3.50 6.07 -2.38 -0.01 3.48 16 27 H 0.27 14.16 8.31 -92.70 -0.77 13.39 16 28 H 0.41 11.10 8.15 -92.72 -0.76 10.35 16 29 H 0.07 1.72 7.43 -2.39 -0.02 1.71 16 30 H 0.13 1.85 8.12 -2.39 -0.02 1.83 16 31 H 0.42 2.12 8.83 -92.71 -0.82 1.30 16 32 H 0.41 4.68 8.93 -92.71 -0.83 3.85 16 33 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.06 1.46 8.10 -2.39 -0.02 1.44 16 Total: -1.00 -80.87 288.77 0.19 -80.68 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -1.26 Total: 14.15 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 3.13 Total: 0.78 kcal Atomic # 7 Polarization: -86.18 SS G_CDS: -3.61 Total: -89.79 kcal Atomic # 8 Polarization: -53.56 SS G_CDS: -0.10 Total: -53.66 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -80.87 0.19 -80.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600315590.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.384 kcal (2) G-P(sol) polarization free energy of solvation -80.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds