Wall clock time and date at job start Mon Mar 30 2020 04:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 H 1.07996 * 119.99751 * 120.00006 * 4 2 1 6 6 C 1.37877 * 120.00001 * 300.00469 * 4 2 1 7 7 N 1.31517 * 120.00094 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99955 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47116 * 59.99536 * 8 6 4 10 10 H 1.48500 * 109.46585 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46730 * 299.99515 * 8 6 4 12 12 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 13 13 O 1.21280 * 119.99781 * 240.00479 * 12 2 1 14 14 N 1.34780 * 119.99795 * 59.99803 * 12 2 1 15 15 C 1.46497 * 119.99566 * 180.02562 * 14 12 2 16 16 H 1.09003 * 112.85056 * 25.34023 * 15 14 12 17 17 C 1.53784 * 113.61126 * 156.53132 * 15 14 12 18 18 C 1.53786 * 87.07801 * 139.98073 * 17 15 14 19 19 H 1.09003 * 113.61526 * 219.93221 * 18 17 15 20 20 C 1.50701 * 113.61454 * 89.11766 * 18 17 15 21 21 N 1.34775 * 120.00071 * 179.97438 * 20 18 17 22 22 O 1.21290 * 119.99604 * 0.02562 * 20 18 17 23 23 C 1.53787 * 113.61653 * 254.13757 * 15 14 12 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 0.97000 * 120.00333 * 179.97438 * 7 6 4 28 28 H 0.96995 * 120.00011 * 0.02562 * 14 12 2 29 29 H 1.08998 * 113.61799 * 254.52676 * 17 15 14 30 30 H 1.09002 * 113.61278 * 25.35275 * 17 15 14 31 31 H 0.97001 * 120.00086 * 0.02562 * 21 20 18 32 32 H 0.97006 * 119.99825 * 179.97438 * 21 20 18 33 33 H 1.08995 * 113.61076 * 334.57310 * 23 15 14 34 34 H 1.08995 * 113.61025 * 105.47189 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.8073 -1.1190 4.0078 10 1 1.8276 -0.4192 5.2204 11 1 1.8279 -2.5198 4.0082 12 6 2.0324 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4546 15 6 2.1948 -0.9409 -3.6507 16 1 2.4125 -1.9939 -3.4720 17 6 1.3325 -0.6935 -4.8998 18 6 2.6469 -0.6093 -5.6938 19 1 2.6483 0.1716 -6.4543 20 6 3.1205 -1.9396 -6.2202 21 7 4.2603 -2.0141 -6.9355 22 8 2.4753 -2.9429 -6.0009 23 6 3.3255 -0.1926 -4.3763 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.7086 1.1614 3.4844 28 1 1.1494 0.5388 -2.5436 29 1 0.7095 -1.5441 -5.1758 30 1 0.7786 0.2448 -4.8691 31 1 4.7760 -1.2116 -7.1112 32 1 4.5653 -2.8705 -7.2740 33 1 3.3184 0.8835 -4.2028 34 1 4.3088 -0.6395 -4.2301 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600315591.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:15 Heat of formation + Delta-G solvation = -68.133437 kcal Electronic energy + Delta-G solvation = -17140.802321 eV Core-core repulsion = 14266.793481 eV Total energy + Delta-G solvation = -2874.008840 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.58200 -38.69042 -37.02662 -33.82361 -33.67299 -32.62598 -30.24917 -25.93287 -25.72325 -25.07681 -22.76864 -21.39544 -19.58255 -19.11496 -17.27645 -17.10591 -16.26973 -16.01167 -15.58236 -14.84362 -14.57526 -14.30066 -14.00769 -13.23883 -12.94455 -12.63757 -12.43904 -12.04538 -11.89105 -11.46015 -10.97142 -10.79394 -10.66039 -10.62241 -10.51792 -10.19436 -10.00173 -9.90452 -9.87248 -8.93744 -8.54484 -8.36740 -8.26612 -5.98943 -4.01725 2.47187 3.31982 3.39591 3.41503 3.47584 3.75249 3.99863 4.38782 4.48803 4.51787 4.73586 4.95964 5.16097 5.34338 5.53240 5.61903 5.79199 5.92672 6.01704 6.13533 6.49772 6.58265 6.67150 6.88305 6.98054 7.12864 7.18485 7.52768 7.80659 8.04023 8.11210 8.20867 8.52019 9.07180 9.31576 9.63727 11.08667 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.047721 B = 0.004921 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.604427 B = 5688.581984 C = 5966.224151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.028 3.972 3 H 0.052 0.948 4 C -0.500 4.500 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.898 5.898 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.519 3.481 13 O -0.546 6.546 14 N -0.736 5.736 15 C 0.127 3.873 16 H 0.113 0.887 17 C -0.127 4.127 18 C -0.141 4.141 19 H 0.105 0.895 20 C 0.534 3.466 21 N -0.856 5.856 22 O -0.536 6.536 23 C -0.137 4.137 24 H 0.012 0.988 25 H 0.031 0.969 26 H 0.092 0.908 27 H 0.261 0.739 28 H 0.396 0.604 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.401 0.599 32 H 0.401 0.599 33 H 0.096 0.904 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.253 2.382 -18.140 18.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.007 3.993 3 H 0.070 0.930 4 C -0.538 4.538 5 H 0.091 0.909 6 C -0.142 4.142 7 N -0.538 5.538 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.309 3.691 13 O -0.421 6.421 14 N -0.389 5.389 15 C 0.021 3.979 16 H 0.130 0.870 17 C -0.166 4.166 18 C -0.163 4.163 19 H 0.123 0.877 20 C 0.319 3.681 21 N -0.419 5.419 22 O -0.411 6.411 23 C -0.176 4.176 24 H 0.031 0.969 25 H 0.050 0.950 26 H 0.111 0.889 27 H 0.070 0.930 28 H 0.230 0.770 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.229 0.771 32 H 0.231 0.769 33 H 0.114 0.886 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.129 1.216 -17.627 17.944 hybrid contribution 0.508 0.098 0.398 0.653 sum 3.637 1.314 -17.229 17.658 Atomic orbital electron populations 1.21737 0.96547 0.99837 1.00866 1.18876 0.94146 0.96792 0.89452 0.93043 1.21120 1.30896 1.12765 0.89059 0.90880 1.24946 0.95150 0.95077 0.99075 1.69863 1.37202 1.23123 1.23565 0.86511 0.79252 0.79752 0.81653 1.20237 1.21401 1.20202 1.22014 0.78290 0.84162 0.84657 1.90529 1.37937 1.26874 1.86772 1.46255 1.55073 1.32109 1.05420 1.22346 0.93293 0.98417 0.83884 0.86956 1.23226 0.95425 1.03365 0.94577 1.22281 1.00218 0.95323 0.98471 0.87702 1.20170 0.80406 0.90621 0.76925 1.43815 1.26454 1.13855 1.57769 1.90768 1.55694 1.37424 1.57260 1.23486 0.99631 1.01992 0.92523 0.96911 0.95007 0.88895 0.92968 0.77005 0.89548 0.88878 0.77061 0.76880 0.88566 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.87 37.16 0.33 -2.74 16 2 C 0.03 0.72 2.64 -92.92 -0.25 0.47 16 3 H 0.05 1.33 8.14 -51.93 -0.42 0.90 16 4 C -0.50 -14.45 8.37 -34.44 -0.29 -14.74 16 5 H 0.07 2.24 6.75 -52.49 -0.35 1.88 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.44 11.32 55.43 0.63 -24.82 16 8 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.52 12.11 7.15 -10.98 -0.08 12.03 16 13 O -0.55 -14.74 15.08 5.56 0.08 -14.66 16 14 N -0.74 -12.93 5.25 -53.01 -0.28 -13.21 16 15 C 0.13 1.97 3.86 -67.11 -0.26 1.71 16 16 H 0.11 2.16 7.43 -51.93 -0.39 1.78 16 17 C -0.13 -1.51 7.20 -25.91 -0.19 -1.70 16 18 C -0.14 -1.40 4.35 -90.87 -0.40 -1.79 16 19 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 20 C 0.53 6.26 7.35 -10.99 -0.08 6.18 16 21 N -0.86 -6.35 8.87 31.22 0.28 -6.07 16 22 O -0.54 -8.80 16.59 5.55 0.09 -8.71 16 23 C -0.14 -1.61 7.47 -25.83 -0.19 -1.80 16 24 H 0.01 0.23 7.56 -51.93 -0.39 -0.16 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 27 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.40 5.86 8.13 -40.82 -0.33 5.53 16 29 H 0.09 1.15 7.43 -51.93 -0.39 0.77 16 30 H 0.09 0.89 8.11 -51.93 -0.42 0.47 16 31 H 0.40 1.72 8.83 -40.82 -0.36 1.36 16 32 H 0.40 2.64 8.93 -40.82 -0.36 2.28 16 33 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 LS Contribution 288.76 15.07 4.35 4.35 Total: -1.00 -34.96 288.76 -5.92 -40.88 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -4.56 Total: 5.94 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -1.49 Total: -0.85 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 0.63 Total: -44.10 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: 0.18 Total: -23.37 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -34.96 -5.92 -40.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600315591.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.253 kcal (2) G-P(sol) polarization free energy of solvation -34.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds