Wall clock time and date at job start Mon Mar 30 2020 04:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 H 1.07996 * 119.99751 * 120.00006 * 4 2 1 6 6 C 1.37877 * 120.00001 * 300.00469 * 4 2 1 7 7 N 1.31517 * 120.00094 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99955 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47116 * 59.99536 * 8 6 4 10 10 H 1.48500 * 109.46585 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46730 * 299.99515 * 8 6 4 12 12 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 13 13 O 1.21280 * 119.99781 * 240.00479 * 12 2 1 14 14 N 1.34780 * 119.99795 * 59.99803 * 12 2 1 15 15 C 1.46497 * 119.99566 * 180.02562 * 14 12 2 16 16 H 1.09003 * 112.85056 * 25.34023 * 15 14 12 17 17 C 1.53784 * 113.61126 * 156.53132 * 15 14 12 18 18 C 1.53786 * 87.07801 * 139.98073 * 17 15 14 19 19 H 1.09003 * 113.61526 * 219.93221 * 18 17 15 20 20 C 1.50701 * 113.61454 * 89.11766 * 18 17 15 21 21 N 1.34775 * 120.00071 * 179.97438 * 20 18 17 22 22 O 1.21290 * 119.99604 * 0.02562 * 20 18 17 23 23 C 1.53787 * 113.61653 * 254.13757 * 15 14 12 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 0.97000 * 120.00333 * 179.97438 * 7 6 4 28 28 H 0.96995 * 120.00011 * 0.02562 * 14 12 2 29 29 H 1.08998 * 113.61799 * 254.52676 * 17 15 14 30 30 H 1.09002 * 113.61278 * 25.35275 * 17 15 14 31 31 H 0.97001 * 120.00086 * 0.02562 * 21 20 18 32 32 H 0.97006 * 119.99825 * 179.97438 * 21 20 18 33 33 H 1.08995 * 113.61076 * 334.57310 * 23 15 14 34 34 H 1.08995 * 113.61025 * 105.47189 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.8073 -1.1190 4.0078 10 1 1.8276 -0.4192 5.2204 11 1 1.8279 -2.5198 4.0082 12 6 2.0324 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4546 15 6 2.1948 -0.9409 -3.6507 16 1 2.4125 -1.9939 -3.4720 17 6 1.3325 -0.6935 -4.8998 18 6 2.6469 -0.6093 -5.6938 19 1 2.6483 0.1716 -6.4543 20 6 3.1205 -1.9396 -6.2202 21 7 4.2603 -2.0141 -6.9355 22 8 2.4753 -2.9429 -6.0009 23 6 3.3255 -0.1926 -4.3763 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.7086 1.1614 3.4844 28 1 1.1494 0.5388 -2.5436 29 1 0.7095 -1.5441 -5.1758 30 1 0.7786 0.2448 -4.8691 31 1 4.7760 -1.2116 -7.1112 32 1 4.5653 -2.8705 -7.2740 33 1 3.3184 0.8835 -4.2028 34 1 4.3088 -0.6395 -4.2301 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600315591.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:14 Heat of formation + Delta-G solvation = -96.925382 kcal Electronic energy + Delta-G solvation = -17142.050833 eV Core-core repulsion = 14266.793481 eV Total energy + Delta-G solvation = -2875.257353 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.63601 -40.27507 -38.26338 -35.75175 -34.70524 -34.18588 -32.22370 -27.27151 -26.98950 -26.67200 -24.44336 -22.61536 -21.19366 -20.20330 -18.46091 -18.05064 -17.95049 -17.66664 -16.99242 -16.45996 -16.01730 -15.59515 -15.49317 -14.85168 -14.47811 -14.25743 -13.56708 -13.35663 -13.20207 -13.03660 -12.95750 -12.66713 -12.57936 -12.19872 -12.01899 -11.74575 -11.57043 -11.03637 -10.95505 -10.66464 -10.58270 -10.25884 -9.86588 -8.14421 -6.24461 1.40708 1.42386 1.51074 1.57689 1.93994 2.38212 2.57333 2.59805 3.14845 3.46211 3.50684 3.87009 3.95927 4.28920 4.38806 4.64187 4.75905 4.76538 4.88738 4.93790 4.97402 5.03556 5.06804 5.24569 5.51772 5.69390 5.78135 5.89768 5.95966 6.23703 6.47392 6.77672 6.90282 7.36065 7.41163 7.59560 8.91108 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.047721 B = 0.004921 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.604427 B = 5688.581984 C = 5966.224151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.024 3.976 3 H 0.046 0.954 4 C -0.531 4.531 5 H 0.044 0.956 6 C 0.021 3.979 7 N -0.909 5.909 8 Si 0.954 3.046 9 H -0.276 1.276 10 H -0.272 1.272 11 H -0.279 1.279 12 C 0.518 3.482 13 O -0.594 6.594 14 N -0.711 5.711 15 C 0.100 3.900 16 H 0.065 0.935 17 C -0.117 4.117 18 C -0.121 4.121 19 H 0.155 0.845 20 C 0.523 3.477 21 N -0.834 5.834 22 O -0.594 6.594 23 C -0.123 4.123 24 H 0.055 0.945 25 H 0.017 0.983 26 H 0.071 0.929 27 H 0.265 0.735 28 H 0.413 0.587 29 H 0.067 0.933 30 H 0.128 0.872 31 H 0.420 0.580 32 H 0.406 0.594 33 H 0.123 0.877 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.336 4.312 -19.762 20.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.003 3.997 3 H 0.064 0.936 4 C -0.570 4.570 5 H 0.063 0.937 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.780 3.220 9 H -0.202 1.202 10 H -0.197 1.197 11 H -0.205 1.205 12 C 0.308 3.692 13 O -0.474 6.474 14 N -0.364 5.364 15 C -0.005 4.005 16 H 0.083 0.917 17 C -0.155 4.155 18 C -0.142 4.142 19 H 0.173 0.827 20 C 0.309 3.691 21 N -0.397 5.397 22 O -0.475 6.475 23 C -0.163 4.163 24 H 0.074 0.926 25 H 0.036 0.964 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.250 0.750 29 H 0.085 0.915 30 H 0.146 0.854 31 H 0.252 0.748 32 H 0.237 0.763 33 H 0.141 0.859 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.229 3.218 -19.319 19.850 hybrid contribution 0.508 -0.497 0.841 1.101 sum 3.737 2.720 -18.478 19.047 Atomic orbital electron populations 1.21559 0.95056 0.99199 1.01912 1.18820 0.95306 0.96075 0.89515 0.93588 1.21262 1.31666 1.12702 0.91355 0.93748 1.25565 0.95197 0.95756 1.01286 1.69930 1.37111 1.23460 1.24367 0.85682 0.78692 0.78666 0.79008 1.20177 1.19668 1.20476 1.21654 0.78038 0.83511 0.86016 1.90505 1.40311 1.28958 1.87630 1.45944 1.54012 1.32029 1.04367 1.22613 0.97274 0.96548 0.84088 0.91669 1.23244 0.96004 1.04230 0.92011 1.22220 0.97892 0.95422 0.98701 0.82694 1.20635 0.80912 0.90688 0.76888 1.43665 1.25071 1.15154 1.55821 1.90754 1.57702 1.39342 1.59662 1.23430 0.97711 1.02782 0.92330 0.92581 0.96359 0.90999 0.92550 0.74955 0.91467 0.85387 0.74845 0.76279 0.85923 0.91719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 8.87 71.98 0.64 -4.87 16 2 C 0.02 1.23 2.64 -12.28 -0.03 1.19 16 3 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 4 C -0.53 -31.57 8.37 25.60 0.21 -31.35 16 5 H 0.04 2.84 6.75 -2.91 -0.02 2.82 16 6 C 0.02 1.20 5.30 84.65 0.45 1.65 16 7 N -0.91 -51.39 11.32 21.45 0.24 -51.15 16 8 Si 0.95 45.75 29.54 68.60 2.03 47.78 16 9 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 11 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 12 C 0.52 24.62 7.15 87.66 0.63 25.24 16 13 O -0.59 -33.58 15.08 -3.03 -0.05 -33.63 16 14 N -0.71 -24.28 5.25 -440.02 -2.31 -26.60 16 15 C 0.10 3.04 3.86 45.52 0.18 3.22 16 16 H 0.07 2.64 7.43 -2.39 -0.02 2.63 16 17 C -0.12 -2.47 7.20 31.12 0.22 -2.25 16 18 C -0.12 -1.98 4.35 -10.95 -0.05 -2.03 16 19 H 0.16 1.12 8.14 -2.39 -0.02 1.10 16 20 C 0.52 11.47 7.35 87.66 0.64 12.12 16 21 N -0.83 -10.48 8.87 -173.53 -1.54 -12.02 16 22 O -0.59 -19.82 16.59 -3.06 -0.05 -19.88 16 23 C -0.12 -2.57 7.47 31.18 0.23 -2.34 16 24 H 0.06 2.04 7.56 -2.39 -0.02 2.02 16 25 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.07 3.65 6.07 -2.39 -0.01 3.63 16 27 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 28 H 0.41 11.11 8.13 -92.71 -0.75 10.36 16 29 H 0.07 1.73 7.43 -2.39 -0.02 1.72 16 30 H 0.13 1.84 8.11 -2.39 -0.02 1.82 16 31 H 0.42 2.15 8.83 -92.71 -0.82 1.34 16 32 H 0.41 4.69 8.93 -92.70 -0.83 3.86 16 33 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.06 1.48 8.09 -2.39 -0.02 1.46 16 Total: -1.00 -80.49 288.76 0.19 -80.30 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -1.25 Total: 14.61 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 3.13 Total: 0.58 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -3.61 Total: -89.76 kcal Atomic # 8 Polarization: -53.41 SS G_CDS: -0.10 Total: -53.50 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -80.49 0.19 -80.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600315591.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.629 kcal (2) G-P(sol) polarization free energy of solvation -80.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds