Wall clock time and date at job start Mon Mar 30 2020 04:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42903 * 113.99838 * 2 1 4 4 C 1.53000 * 109.46726 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.46912 * 180.02562 * 4 3 2 6 6 N 1.27570 * 126.41819 * 359.68804 * 5 4 3 7 7 N 1.39142 * 113.16575 * 179.89158 * 6 5 4 8 8 C 1.46504 * 124.43721 * 180.18652 * 7 6 5 9 9 H 1.09004 * 109.46904 * 180.23570 * 8 7 6 10 10 C 1.52999 * 109.47415 * 60.23952 * 8 7 6 11 11 C 1.50691 * 109.46953 * 300.23346 * 8 7 6 12 12 H 1.07999 * 120.00407 * 0.02562 * 11 8 7 13 13 C 1.37882 * 120.00124 * 180.02562 * 11 8 7 14 14 N 1.31516 * 119.99573 * 0.02562 * 13 11 8 15 15 Si 1.86802 * 120.00311 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.46737 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47278 * 119.99838 * 15 13 11 18 18 H 1.48494 * 109.46757 * 239.99977 * 15 13 11 19 19 C 1.34950 * 111.12323 * 0.39261 * 7 6 5 20 20 O 1.21303 * 127.50414 * 179.78730 * 19 7 6 21 21 C 1.51444 * 126.41522 * 180.02562 * 5 4 3 22 22 H 1.08996 * 109.46933 * 60.00042 * 1 2 3 23 23 H 1.08996 * 109.46843 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46885 * 300.00332 * 1 2 3 25 25 H 1.09001 * 109.46938 * 60.00058 * 3 2 1 26 26 H 1.08992 * 109.47388 * 300.00049 * 3 2 1 27 27 H 1.09002 * 109.47398 * 300.00244 * 4 3 2 28 28 H 1.09001 * 109.47194 * 60.00425 * 4 3 2 29 29 H 1.08999 * 109.47289 * 180.02562 * 10 8 7 30 30 H 1.09004 * 109.46999 * 300.00200 * 10 8 7 31 31 H 1.09000 * 109.46960 * 59.99790 * 10 8 7 32 32 H 0.97001 * 120.00234 * 179.97438 * 14 13 11 33 33 H 1.09001 * 110.60502 * 298.47147 * 21 5 4 34 34 H 1.09000 * 110.61008 * 61.29116 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1485 2.5614 0.0013 6 7 3.5187 3.6708 -0.0043 7 7 4.3610 4.7783 0.0005 8 6 3.9007 6.1692 -0.0002 9 1 4.7622 6.8370 0.0001 10 6 3.0551 6.4273 1.2485 11 6 3.0692 6.4224 -1.2312 12 1 2.9001 5.6269 -1.9418 13 6 2.5243 7.6699 -1.4504 14 7 2.7306 8.6388 -0.5854 15 14 1.4930 7.9837 -2.9760 16 1 1.4129 6.7401 -3.7837 17 1 0.1263 8.4012 -2.5724 18 1 2.1205 9.0592 -3.7850 19 6 5.6574 4.4034 0.0014 20 8 6.6341 5.1227 0.0017 21 6 5.6275 2.8870 0.0015 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.6886 1.8464 0.8900 26 1 1.6887 1.8464 -0.8899 27 1 3.8568 0.6438 0.8908 28 1 3.8575 0.6436 -0.8892 29 1 2.7123 7.4620 1.2477 30 1 2.1936 5.7595 1.2483 31 1 3.6566 6.2441 2.1388 32 1 2.3476 9.5165 -0.7398 33 1 6.1067 2.4940 0.8982 34 1 6.1076 2.4912 -0.8935 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601935026.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:43 Heat of formation + Delta-G solvation = -32.828413 kcal Electronic energy + Delta-G solvation = -17266.948170 eV Core-core repulsion = 14394.470271 eV Total energy + Delta-G solvation = -2872.477899 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.57072 -37.95089 -36.79500 -34.75429 -32.73109 -30.90159 -28.74600 -28.18822 -26.39580 -25.26990 -23.46660 -21.40264 -20.62544 -18.46443 -16.73093 -16.44788 -16.17625 -15.65320 -15.45807 -15.16322 -14.46291 -14.35511 -13.76783 -13.74956 -12.99341 -12.71825 -12.41726 -12.04054 -11.88440 -11.61803 -11.36733 -11.24788 -11.12406 -10.89371 -10.66033 -10.45282 -10.27406 -10.04848 -9.65772 -9.29319 -9.05013 -8.53006 -7.78713 -6.14835 -4.21755 2.06443 3.22194 3.23620 3.31601 3.32293 3.38079 3.55436 4.28922 4.38571 4.62526 5.06379 5.12613 5.16957 5.25791 5.32516 5.43641 5.47510 5.51608 5.59401 5.85295 5.93373 5.95530 6.42649 6.69537 6.83308 6.91577 7.10826 7.15287 7.50450 7.67289 7.90176 8.06032 8.47341 8.57573 8.84791 9.43691 10.91083 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.017870 B = 0.007705 C = 0.005955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.514007 B = 3633.195691 C = 4700.539212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.398 6.398 3 C 0.063 3.937 4 C -0.029 4.029 5 C 0.041 3.959 6 N -0.199 5.199 7 N -0.434 5.434 8 C 0.282 3.718 9 H 0.066 0.934 10 C -0.145 4.145 11 C -0.519 4.519 12 H 0.063 0.937 13 C 0.063 3.937 14 N -0.891 5.891 15 Si 0.904 3.096 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.487 3.513 20 O -0.516 6.516 21 C -0.169 4.169 22 H 0.042 0.958 23 H 0.083 0.917 24 H 0.042 0.958 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.040 0.960 31 H 0.010 0.990 32 H 0.265 0.735 33 H 0.123 0.877 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.855 -15.017 1.972 15.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.317 6.317 3 C -0.013 4.013 4 C -0.068 4.068 5 C -0.152 4.152 6 N -0.007 5.007 7 N -0.253 5.253 8 C 0.184 3.816 9 H 0.083 0.917 10 C -0.204 4.204 11 C -0.558 4.558 12 H 0.081 0.919 13 C -0.139 4.139 14 N -0.529 5.529 15 Si 0.731 3.269 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.208 1.208 19 C 0.273 3.727 20 O -0.391 6.391 21 C -0.211 4.211 22 H 0.061 0.939 23 H 0.101 0.899 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.059 0.941 31 H 0.029 0.971 32 H 0.074 0.926 33 H 0.141 0.859 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.162 -13.883 1.999 14.192 hybrid contribution -0.024 0.292 -0.808 0.859 sum -2.185 -13.591 1.191 13.817 Atomic orbital electron populations 1.22706 0.80883 1.02334 1.00354 1.87768 1.19871 1.28456 1.95625 1.22405 0.92809 0.83981 1.02116 1.19800 0.93365 0.89236 1.04396 1.24787 0.92592 0.94789 1.03040 1.74523 1.23327 0.94095 1.08710 1.50611 1.02738 1.06394 1.65557 1.19146 0.95782 0.71034 0.95632 0.91687 1.22059 0.98899 1.04563 0.94832 1.21274 1.31856 0.96813 1.05834 0.91861 1.24897 0.96252 0.95687 0.97043 1.69874 1.44967 1.02692 1.35369 0.86345 0.79780 0.78262 0.82497 1.19749 1.20783 1.20842 1.21276 0.84295 0.90223 0.76874 1.90718 1.36257 1.61351 1.50741 1.22025 0.96534 0.96220 1.06291 0.93932 0.89880 0.93981 0.92297 0.92113 0.88787 0.88751 0.88426 0.94094 0.97070 0.92550 0.85907 0.85826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.40 -4.85 10.70 -35.23 -0.38 -5.22 16 3 C 0.06 0.80 5.44 37.16 0.20 1.00 16 4 C -0.03 -0.32 6.20 -27.88 -0.17 -0.50 16 5 C 0.04 0.62 7.28 -78.72 -0.57 0.04 16 6 N -0.20 -3.92 11.08 35.53 0.39 -3.52 16 7 N -0.43 -9.95 3.23 -54.53 -0.18 -10.13 16 8 C 0.28 7.42 2.98 -69.08 -0.21 7.21 16 9 H 0.07 1.90 7.68 -51.93 -0.40 1.50 16 10 C -0.15 -3.59 9.19 37.16 0.34 -3.24 16 11 C -0.52 -14.44 8.71 -34.44 -0.30 -14.74 16 12 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 13 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 14 N -0.89 -25.12 11.32 55.43 0.63 -24.49 16 15 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 16 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 C 0.49 10.38 8.43 -10.43 -0.09 10.29 16 20 O -0.52 -12.61 17.57 5.54 0.10 -12.51 16 21 C -0.17 -2.47 6.93 -28.19 -0.20 -2.67 16 22 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 23 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.10 2.58 6.07 -51.93 -0.32 2.27 16 30 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.12 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.12 1.52 8.14 -51.93 -0.42 1.10 16 LS Contribution 295.68 15.07 4.46 4.46 Total: -1.00 -31.93 295.68 -4.88 -36.81 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -4.91 Total: -2.19 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 0.03 Total: 0.49 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.84 Total: -38.14 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.28 Total: -17.73 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.93 -4.88 -36.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601935026.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.983 kcal (2) G-P(sol) polarization free energy of solvation -31.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds