Wall clock time and date at job start Mon Mar 30 2020 04:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47168 * 2 1 4 4 C 1.53001 * 109.46797 * 120.00212 * 2 1 3 5 5 C 1.50700 * 109.46730 * 184.99884 * 4 2 1 6 6 H 1.08002 * 120.00579 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99819 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00232 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00032 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47072 * 59.99982 * 9 7 5 11 11 H 1.48501 * 109.47342 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47157 * 300.00307 * 9 7 5 13 13 N 1.46906 * 109.46974 * 239.99725 * 2 1 3 14 14 C 1.46900 * 110.99732 * 85.91733 * 13 2 1 15 15 H 1.09004 * 110.54034 * 328.59263 * 14 13 2 16 16 C 1.54222 * 110.40879 * 91.72934 * 14 13 2 17 17 C 1.51313 * 103.55406 * 118.76557 * 16 14 13 18 18 O 1.21230 * 125.39824 * 179.89321 * 17 16 14 19 19 N 1.33876 * 109.20662 * 359.63365 * 17 16 14 20 20 C 1.46499 * 122.76392 * 180.24412 * 19 17 16 21 21 C 1.33878 * 114.47602 * 0.23974 * 19 17 16 22 22 O 1.21228 * 125.39481 * 180.02562 * 21 19 17 23 23 H 1.09005 * 109.47186 * 304.20637 * 1 2 3 24 24 H 1.09003 * 109.47465 * 64.20554 * 1 2 3 25 25 H 1.09001 * 109.47391 * 184.20766 * 1 2 3 26 26 H 1.09004 * 109.46905 * 304.99424 * 4 2 1 27 27 H 1.08999 * 109.47629 * 64.99635 * 4 2 1 28 28 H 0.96998 * 119.99961 * 179.97438 * 8 7 5 29 29 H 1.00903 * 110.99720 * 209.86914 * 13 2 1 30 30 H 1.08996 * 110.71520 * 0.19937 * 16 14 13 31 31 H 1.09005 * 110.49850 * 237.22802 * 16 14 13 32 32 H 1.08999 * 109.47249 * 359.96979 * 20 19 17 33 33 H 1.08999 * 109.47500 * 119.97436 * 20 19 17 34 34 H 1.09000 * 109.47285 * 239.97341 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5418 -0.6150 1.3127 6 1 4.0789 -0.0855 0.5396 7 6 4.2302 -1.1928 2.3583 8 7 3.5762 -1.8362 3.3005 9 14 6.0919 -1.0604 2.4374 10 1 6.4843 0.3707 2.4967 11 1 6.5869 -1.7606 3.6498 12 1 6.6845 -1.6864 1.2282 13 7 2.0196 -0.6926 -1.1995 14 6 2.1030 0.2277 -2.3415 15 1 1.3324 0.9954 -2.2710 16 6 3.5068 0.8613 -2.4202 17 6 4.0282 0.4023 -3.7644 18 8 5.1127 0.6807 -4.2293 19 7 3.1044 -0.3646 -4.3566 20 6 3.3051 -0.9729 -5.6742 21 6 1.9822 -0.5300 -3.6457 22 8 1.0216 -1.1835 -3.9918 23 1 -0.3634 0.5778 0.8499 24 1 -0.3634 0.4472 -0.9253 25 1 -0.3634 -1.0249 0.0754 26 1 1.6053 -0.2617 2.1370 27 1 1.7515 -1.7716 1.2057 28 1 4.0605 -2.2430 4.0359 29 1 2.9103 -1.1332 -1.0243 30 1 4.1424 0.4915 -1.6156 31 1 3.4373 1.9486 -2.3866 32 1 4.2885 -0.6979 -6.0554 33 1 3.2393 -2.0575 -5.5875 34 1 2.5368 -0.6160 -6.3600 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695835030.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:29 Heat of formation + Delta-G solvation = -69.631573 kcal Electronic energy + Delta-G solvation = -17574.896237 eV Core-core repulsion = 14700.822433 eV Total energy + Delta-G solvation = -2874.073804 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.79411 -38.49197 -36.97817 -35.61935 -33.44506 -32.14819 -29.07197 -27.51898 -26.79292 -25.17400 -23.14171 -21.90548 -19.89360 -19.30981 -17.24166 -16.89487 -16.48109 -16.36766 -15.16087 -14.81542 -14.67807 -14.30982 -14.13190 -13.65304 -13.23468 -12.91168 -12.67451 -12.63873 -11.99625 -11.87980 -11.56326 -11.36199 -11.19577 -10.95669 -10.65226 -10.57981 -10.32553 -9.91207 -9.77290 -9.38554 -9.18935 -8.48536 -7.99702 -6.11530 -4.16537 1.57225 2.52569 2.76812 3.25736 3.31610 3.33179 4.07080 4.35098 4.36053 4.45913 4.78009 5.08961 5.12567 5.21945 5.27341 5.43719 5.51807 5.53428 5.77307 5.84524 6.05749 6.17324 6.39083 6.76415 6.81182 6.83896 7.24954 7.34606 7.51035 7.77359 7.82903 7.87461 7.95612 8.23358 8.89148 9.48796 10.98940 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.022570 B = 0.007642 C = 0.006180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.264880 B = 3663.133653 C = 4529.397078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.089 3.911 3 H 0.039 0.961 4 C 0.019 3.981 5 C -0.532 4.532 6 H 0.052 0.948 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.887 3.113 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.659 5.659 14 C 0.060 3.940 15 H 0.124 0.876 16 C -0.192 4.192 17 C 0.533 3.467 18 O -0.492 6.492 19 N -0.579 5.579 20 C 0.067 3.933 21 C 0.536 3.464 22 O -0.468 6.468 23 H 0.051 0.949 24 H 0.039 0.961 25 H 0.057 0.943 26 H 0.026 0.974 27 H 0.028 0.972 28 H 0.263 0.737 29 H 0.363 0.637 30 H 0.131 0.869 31 H 0.119 0.881 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.031 4.947 -12.451 13.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.020 4.020 3 H 0.057 0.943 4 C -0.018 4.018 5 C -0.570 4.570 6 H 0.070 0.930 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.715 3.285 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.295 5.295 14 C -0.055 4.055 15 H 0.142 0.858 16 C -0.234 4.234 17 C 0.322 3.678 18 O -0.364 6.364 19 N -0.324 5.324 20 C -0.074 4.074 21 C 0.323 3.677 22 O -0.336 6.336 23 H 0.070 0.930 24 H 0.058 0.942 25 H 0.076 0.924 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.187 0.813 30 H 0.148 0.852 31 H 0.138 0.862 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.584 4.350 -12.899 13.856 hybrid contribution 1.918 0.488 0.271 1.997 sum -0.666 4.839 -12.629 13.540 Atomic orbital electron populations 1.21832 0.96159 1.01875 0.99739 1.21748 0.93738 0.96152 0.90325 0.94300 1.19302 0.95461 0.96385 0.90645 1.21098 0.92068 1.35179 1.08652 0.93032 1.24974 0.98241 0.95006 0.95632 1.69937 1.35732 1.35076 1.11790 0.86734 0.85796 0.78312 0.77653 1.20199 1.21192 1.20141 1.60367 1.35751 1.29444 1.03893 1.22346 0.96563 0.95193 0.91408 0.85847 1.23459 0.98882 1.04867 0.96170 1.20891 0.83202 0.76336 0.87343 1.90742 1.20131 1.55930 1.69621 1.46724 1.18515 1.46891 1.20269 1.21887 1.03708 0.99283 0.82523 1.21031 0.80833 0.79680 0.86114 1.90712 1.32268 1.37157 1.73510 0.93003 0.94168 0.92376 0.95545 0.95379 0.92732 0.81332 0.85151 0.86243 0.89135 0.90570 0.90769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.42 37.16 0.35 -1.92 16 2 C 0.09 1.63 2.45 -67.71 -0.17 1.46 16 3 H 0.04 0.69 7.84 -51.93 -0.41 0.28 16 4 C 0.02 0.46 4.57 -27.88 -0.13 0.33 16 5 C -0.53 -13.46 8.11 -34.44 -0.28 -13.74 16 6 H 0.05 1.22 6.87 -52.49 -0.36 0.86 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -25.32 13.29 55.43 0.74 -24.58 16 9 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.66 -11.37 6.14 -99.96 -0.61 -11.99 16 14 C 0.06 0.83 3.16 -67.92 -0.21 0.61 16 15 H 0.12 1.51 7.28 -51.93 -0.38 1.13 16 16 C -0.19 -2.43 6.69 -26.94 -0.18 -2.61 16 17 C 0.53 7.41 8.08 -11.09 -0.09 7.32 16 18 O -0.49 -8.05 17.23 5.60 0.10 -7.95 16 19 N -0.58 -7.67 2.95 -122.73 -0.36 -8.03 16 20 C 0.07 0.72 10.65 59.85 0.64 1.35 16 21 C 0.54 7.92 7.73 -11.09 -0.09 7.83 16 22 O -0.47 -8.20 17.68 5.60 0.10 -8.10 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.04 0.59 7.55 -51.93 -0.39 0.19 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.36 6.79 6.57 -39.29 -0.26 6.53 16 30 H 0.13 1.83 6.93 -51.93 -0.36 1.47 16 31 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.09 0.90 7.41 -51.93 -0.38 0.52 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 290.22 15.07 4.37 4.37 Total: -1.00 -30.28 290.22 -5.58 -35.86 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -4.63 Total: 2.66 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -0.25 Total: 2.26 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: -0.24 Total: -44.60 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: 0.20 Total: -16.05 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.28 -5.58 -35.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835030.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.769 kcal (2) G-P(sol) polarization free energy of solvation -30.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds