Wall clock time and date at job start Mon Mar 30 2020 03:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47114 * 2 1 4 4 N 1.46500 * 109.47354 * 240.00268 * 2 1 3 5 5 C 1.37102 * 119.99882 * 63.00264 * 4 2 1 6 6 H 1.08002 * 119.99816 * 318.74007 * 5 4 2 7 7 C 1.38945 * 120.00468 * 138.74542 * 5 4 2 8 8 N 1.31402 * 120.00535 * 160.46178 * 7 5 4 9 9 Si 1.86806 * 119.99488 * 340.46067 * 7 5 4 10 10 H 1.48495 * 109.47210 * 95.33856 * 9 7 5 11 11 H 1.48507 * 109.46831 * 215.33775 * 9 7 5 12 12 H 1.48496 * 109.47302 * 335.33206 * 9 7 5 13 13 C 1.34776 * 120.00328 * 242.99930 * 4 2 1 14 14 O 1.21284 * 119.99972 * 174.51292 * 13 4 2 15 15 C 1.50701 * 119.99566 * 354.51647 * 13 4 2 16 16 H 1.09000 * 110.85828 * 326.18993 * 15 13 4 17 17 C 1.54481 * 110.96915 * 90.02308 * 15 13 4 18 18 N 1.46767 * 105.47303 * 143.53579 * 17 15 13 19 19 C 1.34417 * 111.29882 * 342.97450 * 18 17 15 20 20 O 1.21282 * 124.93924 * 180.37094 * 19 18 17 21 21 C 1.51281 * 110.11768 * 0.41757 * 19 18 17 22 22 H 1.08998 * 109.47173 * 54.59211 * 1 2 3 23 23 H 1.08998 * 109.47305 * 174.59175 * 1 2 3 24 24 H 1.09003 * 109.47083 * 294.59219 * 1 2 3 25 25 H 1.08999 * 109.47447 * 120.00188 * 2 1 3 26 26 H 1.09000 * 109.46658 * 65.35361 * 3 2 1 27 27 H 1.09008 * 109.47307 * 185.34594 * 3 2 1 28 28 H 1.08996 * 109.47466 * 305.35404 * 3 2 1 29 29 H 0.96999 * 120.00436 * 180.02562 * 8 7 5 30 30 H 1.09005 * 110.24290 * 262.53083 * 17 15 13 31 31 H 1.08995 * 110.24490 * 24.52846 * 17 15 13 32 32 H 0.96995 * 124.34563 * 162.96438 * 18 17 15 33 33 H 1.09004 * 110.48383 * 257.57003 * 21 19 18 34 34 H 1.08995 * 110.60196 * 134.98030 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 1.7387 -0.1872 -2.4404 6 1 0.7569 0.2086 -2.6547 7 6 2.7182 -0.1865 -3.4259 8 7 2.3781 -0.0766 -4.6904 9 14 4.5188 -0.3416 -2.9530 10 1 4.9349 -1.7639 -3.0485 11 1 5.3450 0.4789 -3.8747 12 1 4.7078 0.1370 -1.5601 13 6 2.7426 -1.8205 -1.0736 14 8 3.0622 -2.4463 -2.0621 15 6 3.1552 -2.3065 0.2920 16 1 3.3481 -1.4675 0.9606 17 6 2.0904 -3.2547 0.8864 18 7 2.8436 -4.2774 1.6218 19 6 4.1357 -4.2925 1.2518 20 8 4.9771 -5.0438 1.6974 21 6 4.3880 -3.2352 0.1996 22 1 -0.3633 0.5954 -0.8376 23 1 -0.3634 -1.0231 -0.0969 24 1 -0.3633 0.4277 0.9345 25 1 1.8933 -0.5138 0.8899 26 1 1.7570 1.9279 0.9341 27 1 3.1258 1.4441 -0.0958 28 1 1.6005 1.9833 -0.8381 29 1 3.0619 -0.0764 -5.3783 30 1 1.4352 -2.7081 1.5649 31 1 1.5083 -3.7157 0.0885 32 1 2.4584 -4.8666 2.2891 33 1 4.4507 -3.6888 -0.7896 34 1 5.3001 -2.6819 0.4229 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700848376.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:52 Heat of formation + Delta-G solvation = -84.594418 kcal Electronic energy + Delta-G solvation = -18310.965653 eV Core-core repulsion = 15436.243011 eV Total energy + Delta-G solvation = -2874.722642 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.83889 -40.34380 -37.53812 -37.12162 -34.51695 -32.50061 -32.12138 -29.07674 -27.85106 -26.91952 -24.07568 -22.28994 -21.66316 -20.87879 -19.07409 -18.40451 -17.78296 -17.14824 -16.54602 -16.14158 -15.80508 -15.43870 -14.88935 -14.82225 -14.59914 -14.32713 -14.25904 -13.95628 -13.92328 -13.12275 -12.85573 -12.64152 -12.54255 -12.43398 -12.21003 -12.10117 -11.73442 -11.51185 -11.11915 -10.74942 -10.39686 -10.17997 -9.53647 -8.39340 -6.08783 1.22367 1.32846 1.45055 1.49097 1.87304 2.35284 2.43664 2.61020 3.11402 3.30422 3.48474 3.77753 3.89283 4.07586 4.29312 4.44336 4.51519 4.55064 4.58068 4.81790 4.92718 4.97361 5.04078 5.15089 5.17276 5.55190 5.57322 5.71952 5.76993 5.92945 5.96619 6.81231 6.96515 7.17805 7.40694 7.91639 8.70818 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.023813 B = 0.010601 C = 0.008447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.554692 B = 2640.557186 C = 3313.888298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.110 3.890 3 C -0.151 4.151 4 N -0.463 5.463 5 C -0.323 4.323 6 H 0.072 0.928 7 C 0.042 3.958 8 N -0.913 5.913 9 Si 0.941 3.059 10 H -0.280 1.280 11 H -0.310 1.310 12 H -0.248 1.248 13 C 0.451 3.549 14 O -0.591 6.591 15 C -0.117 4.117 16 H 0.138 0.862 17 C 0.124 3.876 18 N -0.709 5.709 19 C 0.528 3.472 20 O -0.579 6.579 21 C -0.151 4.151 22 H 0.036 0.964 23 H 0.052 0.948 24 H 0.095 0.905 25 H 0.114 0.886 26 H 0.094 0.906 27 H 0.039 0.961 28 H 0.043 0.957 29 H 0.269 0.731 30 H 0.134 0.866 31 H 0.069 0.931 32 H 0.425 0.575 33 H 0.096 0.904 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.909 0.080 16.453 16.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.008 3.992 3 C -0.209 4.209 4 N -0.184 5.184 5 C -0.451 4.451 6 H 0.090 0.910 7 C -0.162 4.162 8 N -0.551 5.551 9 Si 0.771 3.229 10 H -0.206 1.206 11 H -0.239 1.239 12 H -0.172 1.172 13 C 0.241 3.759 14 O -0.476 6.476 15 C -0.139 4.139 16 H 0.156 0.844 17 C 0.000 4.000 18 N -0.365 5.365 19 C 0.315 3.685 20 O -0.459 6.459 21 C -0.191 4.191 22 H 0.055 0.945 23 H 0.071 0.929 24 H 0.114 0.886 25 H 0.132 0.868 26 H 0.113 0.887 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.152 0.848 31 H 0.087 0.913 32 H 0.266 0.734 33 H 0.114 0.886 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.298 -0.480 15.951 16.123 hybrid contribution 0.677 -0.210 -0.759 1.039 sum -1.621 -0.690 15.192 15.294 Atomic orbital electron populations 1.22023 0.94112 1.01915 1.02530 1.21656 0.95784 0.94068 0.87731 1.22035 1.00312 0.95974 1.02591 1.44021 1.48082 1.20152 1.06145 1.18584 0.97881 1.41281 0.87331 0.91001 1.25854 1.02486 0.93335 0.94501 1.69838 1.35420 1.49121 1.00703 0.85856 0.81174 0.77032 0.78864 1.20647 1.23900 1.17200 1.20678 0.83208 0.81232 0.90821 1.90548 1.58586 1.57515 1.40953 1.22282 0.96334 0.99934 0.95362 0.84412 1.22066 0.92874 0.88332 0.96776 1.46042 1.09089 1.38868 1.42459 1.20780 0.82778 0.83411 0.81502 1.90707 1.49786 1.45103 1.60335 1.22326 0.99977 0.96794 1.00025 0.94491 0.92851 0.88625 0.86818 0.88720 0.94219 0.93822 0.92151 0.84839 0.91308 0.73372 0.88628 0.87123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.12 71.98 0.66 -3.05 16 2 C 0.11 3.11 3.09 44.99 0.14 3.25 16 3 C -0.15 -4.21 9.02 71.98 0.65 -3.56 16 4 N -0.46 -19.11 2.13 -613.14 -1.30 -20.41 16 5 C -0.32 -17.07 8.44 84.04 0.71 -16.36 16 6 H 0.07 4.07 7.30 -2.91 -0.02 4.05 16 7 C 0.04 2.41 4.84 84.93 0.41 2.83 16 8 N -0.91 -56.38 13.96 21.66 0.30 -56.08 16 9 Si 0.94 48.25 24.80 68.60 1.70 49.95 16 10 H -0.28 -15.35 6.41 99.48 0.64 -14.71 16 11 H -0.31 -15.83 7.11 99.48 0.71 -15.12 16 12 H -0.25 -11.31 7.11 99.48 0.71 -10.60 16 13 C 0.45 18.61 4.76 87.66 0.42 19.03 16 14 O -0.59 -30.87 11.53 -3.04 -0.04 -30.91 16 15 C -0.12 -3.31 2.50 -10.48 -0.03 -3.34 16 16 H 0.14 2.96 6.55 -2.39 -0.02 2.94 16 17 C 0.12 2.58 7.22 86.83 0.63 3.21 16 18 N -0.71 -15.12 6.24 -459.80 -2.87 -17.99 16 19 C 0.53 15.80 8.43 87.90 0.74 16.55 16 20 O -0.58 -21.48 18.03 -3.03 -0.05 -21.54 16 21 C -0.15 -4.73 6.35 30.59 0.19 -4.53 16 22 H 0.04 1.13 7.36 -2.39 -0.02 1.11 16 23 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.11 2.26 5.21 -2.39 -0.01 2.25 16 26 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 28 H 0.04 1.44 7.78 -2.39 -0.02 1.42 16 29 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 30 H 0.13 1.60 7.99 -2.38 -0.02 1.58 16 31 H 0.07 1.69 7.88 -2.39 -0.02 1.67 16 32 H 0.42 6.71 8.96 -92.71 -0.83 5.87 16 33 H 0.10 3.64 6.89 -2.39 -0.02 3.63 16 34 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -77.19 276.01 2.47 -74.72 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 0.21 Total: 8.23 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 4.52 Total: 14.02 kcal Atomic # 7 Polarization: -90.61 SS G_CDS: -3.87 Total: -94.48 kcal Atomic # 8 Polarization: -52.35 SS G_CDS: -0.09 Total: -52.44 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 1.70 Total: 49.95 kcal Total: -77.19 2.47 -74.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700848376.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.876 kcal (2) G-P(sol) polarization free energy of solvation -77.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds