Wall clock time and date at job start Mon Mar 30 2020 03:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47365 * 2 1 4 4 N 1.46500 * 109.47216 * 120.00547 * 2 1 3 5 5 C 1.37103 * 119.99699 * 305.43526 * 4 2 1 6 6 H 1.08004 * 119.99759 * 316.18127 * 5 4 2 7 7 C 1.38946 * 120.00145 * 136.17634 * 5 4 2 8 8 N 1.31413 * 119.99975 * 340.69831 * 7 5 4 9 9 Si 1.86805 * 119.99910 * 160.69940 * 7 5 4 10 10 H 1.48491 * 109.46791 * 90.00434 * 9 7 5 11 11 H 1.48497 * 109.46701 * 210.00134 * 9 7 5 12 12 H 1.48495 * 109.46951 * 329.99942 * 9 7 5 13 13 C 1.34769 * 120.00370 * 125.43887 * 4 2 1 14 14 O 1.21299 * 120.00021 * 179.97438 * 13 4 2 15 15 C 1.50696 * 120.00176 * 359.97438 * 13 4 2 16 16 H 1.09001 * 110.88693 * 303.81354 * 15 13 4 17 17 C 1.54478 * 110.97086 * 180.02562 * 15 13 4 18 18 N 1.46768 * 105.47188 * 216.46633 * 17 15 13 19 19 C 1.34413 * 111.30239 * 17.01575 * 18 17 15 20 20 O 1.21277 * 124.94293 * 179.55980 * 19 18 17 21 21 C 1.51280 * 110.11552 * 359.59104 * 19 18 17 22 22 H 1.08998 * 109.46783 * 306.24706 * 1 2 3 23 23 H 1.08998 * 109.46991 * 66.23751 * 1 2 3 24 24 H 1.08998 * 109.47365 * 186.24248 * 1 2 3 25 25 H 1.09006 * 109.47106 * 239.99851 * 2 1 3 26 26 H 1.09008 * 109.47018 * 173.74512 * 3 2 1 27 27 H 1.09000 * 109.47202 * 293.73769 * 3 2 1 28 28 H 1.08999 * 109.47210 * 53.74448 * 3 2 1 29 29 H 0.97005 * 120.00098 * 179.97438 * 8 7 5 30 30 H 1.09000 * 110.24727 * 335.46081 * 17 15 13 31 31 H 1.09004 * 110.24711 * 97.37837 * 17 15 13 32 32 H 0.97002 * 124.34574 * 197.03917 * 18 17 15 33 33 H 1.09002 * 110.49023 * 225.06941 * 21 19 18 34 34 H 1.09001 * 110.48575 * 102.42733 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.5978 -0.2909 2.4383 6 1 1.5504 0.7608 2.6797 7 6 1.2325 -1.2385 3.3865 8 7 0.9223 -2.4588 3.0102 9 14 1.1824 -0.7779 5.1961 10 1 -0.1711 -0.2739 5.5412 11 1 1.4900 -1.9744 6.0201 12 1 2.1884 0.2806 5.4655 13 6 2.8810 -1.7191 1.0754 14 8 3.2857 -2.2906 2.0659 15 6 3.3429 -2.1589 -0.2899 16 1 2.4935 -2.4083 -0.9258 17 6 4.3228 -3.3486 -0.1853 18 7 5.3140 -3.1338 -1.2463 19 6 5.2874 -1.8653 -1.6899 20 8 6.0071 -1.4175 -2.5572 21 6 4.2296 -1.0772 -0.9492 22 1 -0.3633 0.6076 0.8288 23 1 -0.3633 0.4141 -0.9405 24 1 -0.3634 -1.0215 0.1117 25 1 1.8934 -0.5139 -0.8900 26 1 3.1244 1.4444 0.1120 27 1 1.7712 1.9229 -0.9407 28 1 1.5882 1.9876 0.8287 29 1 0.6677 -3.1206 3.6722 30 1 4.8092 -3.3521 0.7901 31 1 3.7940 -4.2881 -0.3459 32 1 5.9113 -3.8194 -1.5841 33 1 3.6442 -0.4764 -1.6453 34 1 4.6877 -0.4442 -0.1893 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700848379.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:55 Heat of formation + Delta-G solvation = -86.153970 kcal Electronic energy + Delta-G solvation = -18257.394705 eV Core-core repulsion = 15382.604436 eV Total energy + Delta-G solvation = -2874.790269 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.63103 -39.95725 -37.42152 -36.73310 -34.33108 -32.46880 -31.57766 -28.62754 -27.77394 -27.05673 -23.96587 -22.16053 -21.64265 -20.55135 -18.73623 -18.29112 -17.59241 -16.76712 -16.48489 -15.96087 -15.70799 -15.40969 -14.76484 -14.61576 -14.43819 -14.10684 -13.94532 -13.48218 -13.40815 -12.97212 -12.80437 -12.58171 -12.48528 -12.35839 -12.21779 -12.05593 -11.87101 -11.48237 -11.06679 -10.68429 -10.15774 -9.93404 -9.01158 -8.14373 -5.88093 1.40456 1.47400 1.50569 1.53940 2.26014 2.41662 2.49346 3.06287 3.30947 3.38644 3.62953 3.95867 4.05443 4.20288 4.44168 4.52994 4.58246 4.61943 4.68760 4.90683 4.97790 5.05816 5.11970 5.18482 5.23038 5.54319 5.62459 5.66776 5.75595 5.98272 6.30495 7.12965 7.21201 7.27867 7.79364 8.42184 8.94284 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.027533 B = 0.008875 C = 0.007518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.730877 B = 3154.001032 C = 3723.536629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.113 3.887 3 C -0.149 4.149 4 N -0.455 5.455 5 C -0.346 4.346 6 H 0.077 0.923 7 C 0.027 3.973 8 N -0.865 5.865 9 Si 0.957 3.043 10 H -0.270 1.270 11 H -0.296 1.296 12 H -0.272 1.272 13 C 0.475 3.525 14 O -0.585 6.585 15 C -0.110 4.110 16 H 0.118 0.882 17 C 0.123 3.877 18 N -0.713 5.713 19 C 0.523 3.477 20 O -0.578 6.578 21 C -0.135 4.135 22 H 0.043 0.957 23 H 0.081 0.919 24 H 0.030 0.970 25 H 0.092 0.908 26 H 0.048 0.952 27 H 0.085 0.915 28 H 0.044 0.956 29 H 0.257 0.743 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.420 0.580 33 H 0.128 0.872 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.164 1.611 -8.385 8.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.009 3.991 3 C -0.207 4.207 4 N -0.176 5.176 5 C -0.474 4.474 6 H 0.094 0.906 7 C -0.180 4.180 8 N -0.501 5.501 9 Si 0.783 3.217 10 H -0.195 1.195 11 H -0.222 1.222 12 H -0.196 1.196 13 C 0.262 3.738 14 O -0.466 6.466 15 C -0.132 4.132 16 H 0.136 0.864 17 C -0.002 4.002 18 N -0.368 5.368 19 C 0.310 3.690 20 O -0.458 6.458 21 C -0.175 4.175 22 H 0.062 0.938 23 H 0.100 0.900 24 H 0.049 0.951 25 H 0.110 0.890 26 H 0.068 0.932 27 H 0.104 0.896 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.117 0.883 32 H 0.260 0.740 33 H 0.146 0.854 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.573 1.472 -8.215 8.493 hybrid contribution 0.010 -0.462 1.236 1.320 sum 1.584 1.010 -6.979 7.228 Atomic orbital electron populations 1.21857 0.95293 1.00741 1.01494 1.21456 0.94825 0.94217 0.88573 1.22062 1.00644 0.95657 1.02356 1.43552 1.38165 1.30588 1.05297 1.19026 1.45890 0.92551 0.89941 0.90556 1.25856 0.94002 0.95402 1.02717 1.69941 1.40617 1.04605 1.34887 0.85523 0.78351 0.77273 0.80554 1.19512 1.22209 1.19632 1.20180 0.80615 0.83327 0.89643 1.90496 1.59050 1.56174 1.40928 1.22082 0.99097 0.96069 0.95973 0.86429 1.21868 0.89079 0.98586 0.90617 1.46160 1.39651 1.12134 1.38876 1.20999 0.83495 0.83405 0.81062 1.90703 1.46990 1.74345 1.33810 1.22391 0.96372 0.97985 1.00739 0.93782 0.90020 0.95050 0.89002 0.93244 0.89576 0.93647 0.93427 0.91124 0.88259 0.73985 0.85427 0.88307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.53 8.96 71.98 0.64 -3.88 16 2 C 0.11 3.80 2.64 44.99 0.12 3.92 16 3 C -0.15 -4.32 9.15 71.98 0.66 -3.66 16 4 N -0.45 -20.42 2.44 -613.13 -1.50 -21.92 16 5 C -0.35 -17.83 7.90 84.04 0.66 -17.16 16 6 H 0.08 3.84 7.31 -2.91 -0.02 3.82 16 7 C 0.03 1.44 4.35 84.93 0.37 1.81 16 8 N -0.87 -49.56 11.79 21.66 0.26 -49.30 16 9 Si 0.96 44.19 29.60 68.60 2.03 46.22 16 10 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 11 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 12 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 13 C 0.47 21.56 6.25 87.66 0.55 22.11 16 14 O -0.58 -32.10 13.26 -3.09 -0.04 -32.14 16 15 C -0.11 -3.59 2.50 -10.48 -0.03 -3.62 16 16 H 0.12 3.41 7.52 -2.39 -0.02 3.39 16 17 C 0.12 3.64 7.14 86.83 0.62 4.26 16 18 N -0.71 -18.53 6.24 -459.81 -2.87 -21.40 16 19 C 0.52 15.96 8.43 87.90 0.74 16.70 16 20 O -0.58 -21.18 18.03 -3.02 -0.05 -21.23 16 21 C -0.13 -3.88 5.45 30.59 0.17 -3.71 16 22 H 0.04 1.60 7.77 -2.39 -0.02 1.59 16 23 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.09 2.61 4.45 -2.38 -0.01 2.60 16 26 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 27 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.04 1.44 7.51 -2.39 -0.02 1.42 16 29 H 0.26 14.38 8.31 -92.70 -0.77 13.61 16 30 H 0.07 2.48 6.96 -2.39 -0.02 2.46 16 31 H 0.10 2.56 8.14 -2.38 -0.02 2.54 16 32 H 0.42 8.79 8.96 -92.71 -0.83 7.96 16 33 H 0.13 3.06 6.98 -2.39 -0.02 3.04 16 34 H 0.10 3.10 7.89 -2.39 -0.02 3.08 16 Total: -1.00 -69.61 279.81 2.62 -66.99 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.28 Total: 16.01 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: 4.51 Total: 16.76 kcal Atomic # 7 Polarization: -88.50 SS G_CDS: -4.11 Total: -92.61 kcal Atomic # 8 Polarization: -53.28 SS G_CDS: -0.10 Total: -53.37 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -69.61 2.62 -66.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700848379.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.159 kcal (2) G-P(sol) polarization free energy of solvation -69.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds