Wall clock time and date at job start Mon Mar 30 2020 03:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50701 * 120.00073 * 2 1 4 4 O 1.45194 * 109.47208 * 134.99793 * 3 2 1 5 5 C 1.34638 * 117.00224 * 179.97438 * 4 3 2 6 6 O 1.21515 * 119.99677 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00428 * 179.97438 * 5 4 3 8 8 C 1.46957 * 120.59483 * 179.97438 * 7 5 4 9 9 C 1.53378 * 108.63600 * 235.24927 * 8 7 5 10 10 N 1.46960 * 108.63441 * 310.57541 * 9 8 7 11 11 C 1.36929 * 120.59772 * 235.19929 * 10 9 8 12 12 H 1.08001 * 120.00154 * 26.80307 * 11 10 9 13 13 C 1.38818 * 120.00276 * 206.52209 * 11 10 9 14 14 N 1.31616 * 120.00013 * 217.35632 * 13 11 10 15 15 Si 1.86795 * 119.99797 * 37.35637 * 13 11 10 16 16 H 1.48497 * 109.47307 * 95.28345 * 15 13 11 17 17 H 1.48499 * 109.46918 * 215.28171 * 15 13 11 18 18 H 1.48500 * 109.47058 * 335.28197 * 15 13 11 19 19 C 1.46972 * 118.81093 * 55.48291 * 10 9 8 20 20 C 1.46973 * 120.59110 * 0.02562 * 7 5 4 21 21 H 1.07999 * 119.99914 * 180.02562 * 1 2 3 22 22 H 1.08004 * 119.99681 * 0.02562 * 1 2 3 23 23 H 1.07993 * 120.00044 * 179.97438 * 2 1 3 24 24 H 1.09002 * 109.47044 * 14.99534 * 3 2 1 25 25 H 1.09002 * 109.46858 * 255.00238 * 3 2 1 26 26 H 1.09004 * 109.60829 * 115.50719 * 8 7 5 27 27 H 1.08993 * 109.75563 * 355.08178 * 8 7 5 28 28 H 1.09001 * 109.60979 * 190.83526 * 9 8 7 29 29 H 1.08998 * 109.74677 * 70.41012 * 9 8 7 30 30 H 0.97000 * 120.00046 * 180.02562 * 14 13 11 31 31 H 1.09002 * 109.61298 * 64.25873 * 19 10 9 32 32 H 1.08995 * 109.61261 * 184.77395 * 19 10 9 33 33 H 1.08994 * 109.60538 * 244.49313 * 20 7 5 34 34 H 1.09004 * 109.60748 * 4.83428 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1438 1.2403 0.9680 5 6 3.9196 2.3336 1.0924 6 8 3.6996 3.3154 0.4109 7 7 4.9395 2.3397 1.9734 8 6 5.7947 3.5258 2.1194 9 6 7.2545 3.1069 1.9048 10 7 7.5316 1.9273 2.7363 11 6 8.5684 1.9329 3.6307 12 1 8.9102 2.8653 4.0553 13 6 9.1765 0.7397 3.9962 14 7 9.5785 0.5588 5.2363 15 14 9.4241 -0.6091 2.7278 16 1 10.7905 -0.5058 2.1557 17 1 9.2578 -1.9347 3.3761 18 1 8.4207 -0.4590 1.6434 19 6 6.6798 0.7390 2.5862 20 6 5.2169 1.1597 2.8045 21 1 -0.5400 -0.9353 0.0004 22 1 -0.5400 0.9354 -0.0004 23 1 1.8500 -0.9352 0.0004 24 1 1.3856 2.1161 0.2659 25 1 2.4755 1.4867 -0.9927 26 1 5.6767 3.9410 3.1203 27 1 5.5162 4.2744 1.3777 28 1 7.9159 3.9230 2.1958 29 1 7.4167 2.8611 0.8553 30 1 10.0037 -0.2748 5.4916 31 1 6.7991 0.3276 1.5839 32 1 6.9615 -0.0090 3.3273 33 1 5.0576 1.4061 3.8542 34 1 4.5537 0.3444 2.5153 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701231533.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:54 Heat of formation + Delta-G solvation = -38.409759 kcal Electronic energy + Delta-G solvation = -17524.300395 eV Core-core repulsion = 14651.580470 eV Total energy + Delta-G solvation = -2872.719925 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.68674 -39.31743 -37.63287 -35.75363 -34.90663 -33.52713 -32.21307 -29.16578 -27.51823 -25.34510 -24.80576 -22.93194 -21.20952 -20.82723 -19.50506 -18.32414 -18.17450 -17.58767 -16.93796 -16.19651 -16.01323 -15.68758 -15.45933 -15.12414 -14.80936 -14.35718 -14.13020 -13.81782 -13.74495 -13.44684 -12.78570 -12.55922 -12.37506 -12.15605 -12.09132 -11.93627 -11.90364 -11.54251 -11.42319 -10.68855 -10.45014 -9.99218 -8.91971 -8.23498 -5.39150 0.82826 1.36225 1.47495 1.49788 1.54213 1.67978 2.45290 2.82468 2.95981 3.37718 3.86420 4.04832 4.07050 4.12503 4.25068 4.32594 4.38248 4.50272 4.54238 4.62584 4.77659 4.84902 4.92053 4.98557 5.15216 5.26600 5.38594 5.60013 5.68606 5.85067 6.11227 6.29173 6.88710 7.15417 7.61688 8.04754 8.94365 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.032912 B = 0.006313 C = 0.005656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.547231 B = 4434.411588 C = 4949.190681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.177 4.177 3 C 0.109 3.891 4 O -0.368 6.368 5 C 0.649 3.351 6 O -0.607 6.607 7 N -0.585 5.585 8 C 0.119 3.881 9 C 0.130 3.870 10 N -0.613 5.613 11 C -0.267 4.267 12 H 0.056 0.944 13 C -0.007 4.007 14 N -0.924 5.924 15 Si 0.895 3.105 16 H -0.302 1.302 17 H -0.293 1.293 18 H -0.240 1.240 19 C 0.128 3.872 20 C 0.104 3.896 21 H 0.129 0.871 22 H 0.108 0.892 23 H 0.124 0.876 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.031 0.969 30 H 0.263 0.737 31 H 0.034 0.966 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.340 -1.030 -9.459 18.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.195 4.195 3 C 0.035 3.965 4 O -0.282 6.282 5 C 0.404 3.596 6 O -0.499 6.499 7 N -0.325 5.325 8 C -0.003 4.003 9 C 0.005 3.995 10 N -0.337 5.337 11 C -0.395 4.395 12 H 0.074 0.926 13 C -0.205 4.205 14 N -0.567 5.567 15 Si 0.722 3.278 16 H -0.231 1.231 17 H -0.220 1.220 18 H -0.164 1.164 19 C 0.002 3.998 20 C -0.019 4.019 21 H 0.147 0.853 22 H 0.126 0.874 23 H 0.142 0.858 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.117 0.883 28 H 0.102 0.898 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -16.392 -0.848 -9.572 19.001 hybrid contribution 0.841 -0.659 -0.324 1.117 sum -15.552 -1.507 -9.896 18.495 Atomic orbital electron populations 1.24151 0.94702 1.03943 0.95946 1.22664 0.96221 0.96782 1.03833 1.22171 0.85631 0.98032 0.90681 1.86257 1.43099 1.38525 1.60284 1.18061 0.80083 0.81477 0.80007 1.90918 1.73967 1.35859 1.49154 1.46966 1.28949 1.17714 1.38844 1.22171 0.89557 0.85731 1.02839 1.21495 0.94051 0.90377 0.93619 1.44429 1.31927 1.12859 1.44473 1.18731 1.10944 0.94042 1.15829 0.92612 1.25651 0.98825 0.99247 0.96770 1.70192 1.42928 1.26819 1.16727 0.86652 0.78724 0.79476 0.82990 1.23085 1.22006 1.16408 1.21808 0.89402 0.89626 0.98957 1.22375 0.97480 0.87200 0.94890 0.85332 0.87391 0.85843 0.90554 0.90590 0.90508 0.88261 0.89824 0.95107 0.92746 0.94792 0.91720 0.90816 0.87671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 14.31 67.77 0.97 -0.94 16 2 C -0.18 -3.06 9.90 25.64 0.25 -2.80 16 3 C 0.11 2.48 5.89 71.24 0.42 2.90 16 4 O -0.37 -10.79 8.83 -55.47 -0.49 -11.28 16 5 C 0.65 22.08 8.43 129.79 1.09 23.18 16 6 O -0.61 -22.83 15.54 19.79 0.31 -22.52 16 7 N -0.59 -20.03 2.95 -947.56 -2.79 -22.82 16 8 C 0.12 3.97 6.59 86.42 0.57 4.54 16 9 C 0.13 4.89 6.67 86.42 0.58 5.47 16 10 N -0.61 -27.71 2.71 -697.40 -1.89 -29.60 16 11 C -0.27 -14.38 9.84 84.04 0.83 -13.56 16 12 H 0.06 3.25 8.05 -2.91 -0.02 3.23 16 13 C -0.01 -0.37 4.80 84.86 0.41 0.04 16 14 N -0.92 -55.17 13.97 21.65 0.30 -54.87 16 15 Si 0.89 42.88 26.46 68.60 1.82 44.70 16 16 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 17 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 18 H -0.24 -10.71 4.99 99.48 0.50 -10.22 16 19 C 0.13 5.22 4.58 86.55 0.40 5.61 16 20 C 0.10 3.52 6.62 86.55 0.57 4.09 16 21 H 0.13 1.12 8.06 -2.91 -0.02 1.09 16 22 H 0.11 1.19 7.90 -2.91 -0.02 1.17 16 23 H 0.12 2.04 8.06 -2.91 -0.02 2.02 16 24 H 0.08 1.67 7.86 -2.39 -0.02 1.65 16 25 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 27 H 0.10 3.12 7.00 -2.39 -0.02 3.10 16 28 H 0.08 3.02 7.93 -2.39 -0.02 3.00 16 29 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 31 H 0.03 1.39 6.78 -2.39 -0.02 1.37 16 32 H 0.06 2.82 5.59 -2.39 -0.01 2.81 16 33 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.11 3.07 6.91 -2.39 -0.02 3.06 16 Total: -1.00 -65.31 282.31 4.21 -61.10 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 0.87 Total: 6.76 kcal Atomic # 6 Polarization: 22.45 SS G_CDS: 6.09 Total: 28.54 kcal Atomic # 7 Polarization: -102.91 SS G_CDS: -4.38 Total: -107.29 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -0.18 Total: -33.81 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.82 Total: 44.70 kcal Total: -65.31 4.21 -61.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701231533.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.689 kcal (2) G-P(sol) polarization free energy of solvation -65.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds