Wall clock time and date at job start Mon Mar 30 2020 04:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 115.54951 * 2 1 4 4 C 1.53002 * 117.49888 * 145.67026 * 2 1 3 5 5 C 1.53000 * 117.50107 * 214.32788 * 2 1 3 6 6 H 1.08999 * 117.49959 * 144.99502 * 5 2 1 7 7 C 1.50701 * 117.49727 * 0.02562 * 5 2 1 8 8 O 1.21288 * 120.00171 * 0.02562 * 7 5 2 9 9 N 1.34774 * 120.00330 * 179.97438 * 7 5 2 10 10 C 1.46501 * 120.00405 * 180.02562 * 9 7 5 11 11 C 1.52997 * 109.47143 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47068 * 179.97438 * 11 10 9 13 13 O 1.21289 * 119.99909 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99747 * 179.97438 * 12 11 10 15 15 C 1.37104 * 119.99764 * 180.02562 * 14 12 11 16 16 H 1.08005 * 119.99732 * 359.97438 * 15 14 12 17 17 C 1.38944 * 119.99939 * 180.02562 * 15 14 12 18 18 N 1.31413 * 120.00472 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99994 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47073 * 89.99973 * 19 17 15 21 21 H 1.48494 * 109.47141 * 210.00102 * 19 17 15 22 22 H 1.48500 * 109.46763 * 329.99817 * 19 17 15 23 23 H 1.08997 * 109.47260 * 205.57907 * 1 2 3 24 24 H 1.09000 * 109.47658 * 325.58288 * 1 2 3 25 25 H 1.09001 * 109.47132 * 85.58115 * 1 2 3 26 26 H 1.09000 * 117.49996 * 215.00804 * 4 2 1 27 27 H 1.08999 * 117.49664 * 0.02562 * 4 2 1 28 28 H 0.97005 * 119.99431 * 0.02562 * 9 7 5 29 29 H 1.09001 * 109.46610 * 300.00061 * 10 9 7 30 30 H 1.08998 * 109.46855 * 59.99765 * 10 9 7 31 31 H 1.08994 * 109.47424 * 300.00038 * 11 10 9 32 32 H 1.08997 * 109.47139 * 59.99680 * 11 10 9 33 33 H 0.96992 * 120.00302 * 0.02562 * 14 12 11 34 34 H 0.96996 * 120.00183 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1207 0.7654 5 6 2.2365 -1.1207 -0.7653 6 1 3.1713 -0.8746 -1.2689 7 6 1.3720 -2.1398 -1.4619 8 8 0.1638 -2.0520 -1.4031 9 7 1.9415 -3.1483 -2.1512 10 6 1.1012 -4.1387 -2.8289 11 6 1.9903 -5.1663 -3.5320 12 6 1.1258 -6.1855 -4.2286 13 8 -0.0824 -6.0981 -4.1690 14 7 1.6955 -7.1934 -4.9186 15 6 0.9090 -8.1202 -5.5528 16 1 -0.1669 -8.0429 -5.4990 17 6 1.4962 -9.1596 -6.2638 18 7 2.8053 -9.2546 -6.3280 19 14 0.4247 -10.4229 -7.1272 20 1 0.1404 -9.9674 -8.5117 21 1 1.1342 -11.7267 -7.1710 22 1 -0.8522 -10.5788 -6.3853 23 1 -0.3633 -0.9269 0.4437 24 1 -0.3634 0.8477 0.5808 25 1 -0.3633 0.0792 -1.0246 26 1 3.1713 -0.8747 1.2690 27 1 1.6112 -1.8583 1.2685 28 1 2.9079 -3.2183 -2.1986 29 1 0.4715 -4.6432 -2.0961 30 1 0.4723 -3.6385 -3.5654 31 1 2.6196 -4.6615 -4.2648 32 1 2.6195 -5.6665 -2.7958 33 1 2.6617 -7.2630 -4.9666 34 1 3.2152 -9.9800 -6.8246 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701255835.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:28 Heat of formation + Delta-G solvation = -87.327573 kcal Electronic energy + Delta-G solvation = -16447.861015 eV Core-core repulsion = 13573.019854 eV Total energy + Delta-G solvation = -2874.841160 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.14813 -40.18197 -37.74776 -36.30121 -35.81910 -33.35649 -31.93984 -29.44789 -27.41154 -25.67075 -23.60492 -21.97950 -21.41439 -20.64111 -19.84433 -18.21547 -17.75713 -16.88275 -16.66510 -16.40544 -16.11176 -15.78583 -15.50254 -14.76816 -14.39569 -14.21279 -13.93819 -13.56291 -13.51386 -13.13219 -12.96868 -12.83688 -12.44081 -12.39999 -12.34466 -12.12751 -11.55380 -11.16786 -11.02045 -10.64807 -10.40509 -10.12741 -10.03875 -8.50042 -5.99085 1.36424 1.41230 1.52672 1.53645 1.99861 2.05758 2.31628 2.88470 3.17409 3.28353 3.67337 3.79179 3.91705 3.97377 4.13685 4.24527 4.34701 4.50643 4.66869 4.82765 4.90927 4.93351 4.97149 4.99284 5.08033 5.20105 5.38288 5.41304 5.58039 5.95802 6.54610 6.60283 7.08464 7.30733 7.50799 8.06637 8.67039 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.073641 B = 0.003627 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.132199 B = 7717.728005 C = 8000.276424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.126 4.126 3 H 0.140 0.860 4 C -0.138 4.138 5 C -0.195 4.195 6 H 0.157 0.843 7 C 0.528 3.472 8 O -0.581 6.581 9 N -0.712 5.712 10 C 0.152 3.848 11 C -0.122 4.122 12 C 0.436 3.564 13 O -0.640 6.640 14 N -0.566 5.566 15 C -0.340 4.340 16 H 0.077 0.923 17 C -0.009 4.009 18 N -0.916 5.916 19 Si 0.992 3.008 20 H -0.270 1.270 21 H -0.268 1.268 22 H -0.275 1.275 23 H 0.038 0.962 24 H 0.066 0.934 25 H 0.042 0.958 26 H 0.137 0.863 27 H 0.082 0.918 28 H 0.419 0.581 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.400 0.600 34 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.597 14.888 10.835 19.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.144 4.144 3 H 0.157 0.843 4 C -0.175 4.175 5 C -0.216 4.216 6 H 0.175 0.825 7 C 0.316 3.684 8 O -0.461 6.461 9 N -0.364 5.364 10 C 0.027 3.973 11 C -0.162 4.162 12 C 0.223 3.777 13 O -0.528 6.528 14 N -0.202 5.202 15 C -0.469 4.469 16 H 0.095 0.905 17 C -0.209 4.209 18 N -0.557 5.557 19 Si 0.815 3.185 20 H -0.196 1.196 21 H -0.193 1.193 22 H -0.199 1.199 23 H 0.058 0.942 24 H 0.085 0.915 25 H 0.062 0.938 26 H 0.155 0.845 27 H 0.101 0.899 28 H 0.257 0.743 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.234 0.766 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.089 14.832 10.803 19.333 hybrid contribution 0.120 -1.059 -0.787 1.325 sum 6.209 13.773 10.017 18.127 Atomic orbital electron populations 1.21293 0.93582 1.00869 1.01131 1.22502 0.95196 0.95008 1.01691 0.84266 1.23190 1.03868 1.00657 0.89795 1.22375 1.02542 1.00163 0.96508 0.82547 1.20494 0.88147 0.81685 0.78062 1.90719 1.16936 1.75757 1.62707 1.45839 1.11175 1.26899 1.52516 1.20613 0.92587 0.88789 0.95319 1.21505 0.98168 0.95292 1.01270 1.20783 0.88801 0.84604 0.83471 1.90530 1.17231 1.77932 1.67146 1.41916 1.09582 1.23557 1.45191 1.19689 0.91983 1.05784 1.29482 0.90487 1.26019 0.97420 0.99725 0.97762 1.69653 1.09801 1.33936 1.42281 0.84948 0.77831 0.77316 0.78379 1.19577 1.19304 1.19944 0.94248 0.91480 0.93847 0.84524 0.89909 0.74348 0.93635 0.93578 0.86482 0.86523 0.76569 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.51 8.43 71.98 0.61 -1.90 16 2 C -0.13 -2.05 6.40 -10.79 -0.07 -2.12 16 3 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 4 C -0.14 -1.94 9.89 30.62 0.30 -1.64 16 5 C -0.20 -3.29 6.19 -11.52 -0.07 -3.36 16 6 H 0.16 1.56 8.14 -2.39 -0.02 1.54 16 7 C 0.53 14.21 7.60 87.66 0.67 14.88 16 8 O -0.58 -21.29 13.11 -3.06 -0.04 -21.33 16 9 N -0.71 -17.20 5.56 -463.06 -2.57 -19.77 16 10 C 0.15 5.07 4.96 86.38 0.43 5.50 16 11 C -0.12 -3.83 5.81 29.85 0.17 -3.66 16 12 C 0.44 20.56 7.78 87.66 0.68 21.24 16 13 O -0.64 -36.35 15.56 -3.06 -0.05 -36.40 16 14 N -0.57 -28.62 5.29 -306.98 -1.62 -30.24 16 15 C -0.34 -19.31 9.68 84.04 0.81 -18.49 16 16 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 17 C -0.01 -0.47 5.50 84.92 0.47 0.00 16 18 N -0.92 -48.58 13.05 21.66 0.28 -48.29 16 19 Si 0.99 42.73 29.55 68.60 2.03 44.75 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 23 H 0.04 1.06 7.01 -2.39 -0.02 1.05 16 24 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.04 1.18 7.26 -2.39 -0.02 1.16 16 26 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.08 1.48 8.05 -2.39 -0.02 1.46 16 28 H 0.42 6.53 8.47 -92.70 -0.79 5.74 16 29 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16 30 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 31 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 32 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 33 H 0.40 18.76 7.90 -92.71 -0.73 18.03 16 34 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -74.73 294.88 1.63 -73.10 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: -0.40 Total: 27.74 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: 4.00 Total: 10.44 kcal Atomic # 7 Polarization: -94.40 SS G_CDS: -3.91 Total: -98.31 kcal Atomic # 8 Polarization: -57.64 SS G_CDS: -0.09 Total: -57.73 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -74.73 1.63 -73.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701255835.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.223 kcal (2) G-P(sol) polarization free energy of solvation -74.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds