Wall clock time and date at job start Mon Mar 30 2020 04:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 115.56367 * 2 1 4 4 C 1.53072 * 117.49948 * 145.71841 * 2 1 3 5 5 C 1.52996 * 59.98566 * 107.47812 * 4 2 1 6 6 H 1.08998 * 117.50535 * 252.49800 * 5 4 2 7 7 C 1.50701 * 117.49542 * 107.50032 * 5 4 2 8 8 O 1.21288 * 120.00292 * 291.25475 * 7 5 4 9 9 N 1.34777 * 120.00115 * 111.25385 * 7 5 4 10 10 C 1.46500 * 120.00376 * 180.02562 * 9 7 5 11 11 C 1.52997 * 109.47473 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 9 13 13 O 1.21294 * 119.99849 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99795 * 179.97438 * 12 11 10 15 15 C 1.37101 * 119.99707 * 180.02562 * 14 12 11 16 16 H 1.08002 * 119.99704 * 359.97438 * 15 14 12 17 17 C 1.38941 * 119.99927 * 180.02562 * 15 14 12 18 18 N 1.31417 * 120.00180 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00273 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47268 * 89.99721 * 19 17 15 21 21 H 1.48498 * 109.47211 * 209.99980 * 19 17 15 22 22 H 1.48505 * 109.46734 * 329.99774 * 19 17 15 23 23 H 1.09003 * 109.46906 * 205.68931 * 1 2 3 24 24 H 1.09004 * 109.46891 * 325.67771 * 1 2 3 25 25 H 1.08998 * 109.47633 * 85.68322 * 1 2 3 26 26 H 1.09005 * 117.49100 * 359.97438 * 4 2 1 27 27 H 1.08997 * 117.51847 * 214.96223 * 4 2 1 28 28 H 0.97004 * 120.00228 * 0.02562 * 9 7 5 29 29 H 1.09002 * 109.47129 * 59.99747 * 10 9 7 30 30 H 1.08998 * 109.46845 * 300.00553 * 10 9 7 31 31 H 1.09002 * 109.47153 * 59.99757 * 11 10 9 32 32 H 1.09001 * 109.46832 * 299.99948 * 11 10 9 33 33 H 0.96995 * 120.00011 * 0.02562 * 14 12 11 34 34 H 0.97000 * 119.99884 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2368 -1.1219 0.7648 5 6 2.2363 -1.1209 -0.7652 6 1 1.6111 -1.8581 -1.2689 7 6 3.5291 -0.7810 -1.4611 8 8 3.9709 0.3471 -1.4028 9 7 4.1944 -1.7304 -2.1483 10 6 5.4514 -1.4001 -2.8244 11 6 5.9964 -2.6462 -3.5253 12 6 7.2891 -2.3062 -4.2212 13 8 7.7313 -1.1783 -4.1620 14 7 7.9544 -3.2557 -4.9086 15 6 9.1307 -2.9465 -5.5412 16 1 9.5240 -1.9420 -5.4892 17 6 9.8162 -3.9252 -6.2503 18 7 9.3374 -5.1474 -6.3140 19 14 11.4194 -3.5042 -7.1117 20 1 12.5553 -3.7327 -6.1830 21 1 11.5786 -4.3666 -8.3101 22 1 11.3985 -2.0786 -7.5270 23 1 -0.3633 -0.9261 0.4455 24 1 -0.3633 0.8488 0.5795 25 1 -0.3634 0.0773 -1.0247 26 1 1.6114 -1.8594 1.2680 27 1 3.1720 -0.8767 1.2680 28 1 3.8410 -2.6326 -2.1954 29 1 6.1771 -1.0488 -2.0908 30 1 5.2726 -0.6178 -3.5619 31 1 5.2706 -2.9971 -4.2589 32 1 6.1751 -3.4288 -2.7879 33 1 7.6009 -4.1578 -4.9556 34 1 9.8162 -5.8307 -6.8087 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701255838.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:36 Heat of formation + Delta-G solvation = -67.471981 kcal Electronic energy + Delta-G solvation = -16260.621567 eV Core-core repulsion = 13386.641410 eV Total energy + Delta-G solvation = -2873.980157 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.97687 -38.33006 -36.97105 -34.92040 -33.94367 -31.36086 -30.50549 -28.88868 -25.67080 -24.25816 -22.37491 -21.01650 -20.18782 -19.10841 -17.94994 -17.30595 -16.34153 -15.53974 -15.30941 -14.72380 -14.55479 -14.25482 -13.89377 -13.88401 -13.41333 -12.95365 -12.62301 -12.44689 -12.24517 -11.65038 -11.61343 -11.37472 -11.20319 -10.95977 -10.56693 -10.41455 -10.29536 -10.25002 -9.78326 -9.56138 -8.91836 -8.48179 -8.01993 -6.46065 -3.87078 2.52287 3.14219 3.15797 3.25075 3.31650 3.64863 3.84247 4.15644 4.49125 4.55013 4.61663 4.97196 4.99675 5.07222 5.19084 5.28113 5.41795 5.46112 5.49783 5.57331 5.72938 5.78968 5.79952 6.08521 6.29179 6.30220 6.35021 6.61250 7.51824 7.58236 8.00907 8.31031 8.54875 9.12821 9.48382 9.99174 10.71479 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.080156 B = 0.003437 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.236323 B = 8144.873044 C = 8350.206158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.124 4.124 3 H 0.117 0.883 4 C -0.150 4.150 5 C -0.190 4.190 6 H 0.123 0.877 7 C 0.538 3.462 8 O -0.540 6.540 9 N -0.726 5.726 10 C 0.138 3.862 11 C -0.142 4.142 12 C 0.442 3.558 13 O -0.593 6.593 14 N -0.559 5.559 15 C -0.302 4.302 16 H 0.104 0.896 17 C 0.023 3.977 18 N -0.901 5.901 19 Si 0.931 3.069 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.269 1.269 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.103 0.897 27 H 0.099 0.901 28 H 0.399 0.601 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.393 0.607 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.988 0.872 10.386 19.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.143 4.143 3 H 0.135 0.865 4 C -0.187 4.187 5 C -0.211 4.211 6 H 0.140 0.860 7 C 0.324 3.676 8 O -0.417 6.417 9 N -0.377 5.377 10 C 0.015 3.985 11 C -0.183 4.183 12 C 0.227 3.773 13 O -0.479 6.479 14 N -0.195 5.195 15 C -0.431 4.431 16 H 0.122 0.878 17 C -0.179 4.179 18 N -0.542 5.542 19 Si 0.758 3.242 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.193 1.193 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.122 0.878 27 H 0.118 0.882 28 H 0.232 0.768 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.227 0.773 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.261 2.270 10.337 18.571 hybrid contribution 0.485 -1.125 -0.649 1.386 sum -14.776 1.144 9.688 17.706 Atomic orbital electron populations 1.21399 0.92297 1.02126 1.02193 1.22390 0.95128 0.95214 1.01555 0.86468 1.23110 1.03162 1.01507 0.90952 1.22322 0.97895 1.05210 0.95722 0.85953 1.19631 0.84634 0.84828 0.78507 1.90715 1.68599 1.21071 1.61351 1.46029 1.25133 1.13212 1.53322 1.21057 0.83800 0.96996 0.96616 1.21639 0.97835 0.98413 1.00443 1.19625 0.86774 0.86266 0.84610 1.90557 1.70111 1.21412 1.65800 1.41878 1.21463 1.11213 1.44941 1.19742 0.98118 0.98079 1.27194 0.87819 1.25280 0.99909 0.94847 0.97836 1.69611 1.40126 1.01988 1.42473 0.85842 0.81184 0.78623 0.78573 1.20337 1.20877 1.19342 0.92400 0.91724 0.91935 0.87848 0.88241 0.76758 0.90707 0.90679 0.89851 0.89843 0.77338 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 10.19 37.16 0.38 -0.47 16 2 C -0.12 -1.18 5.92 -90.58 -0.54 -1.71 16 3 H 0.12 1.33 7.67 -51.93 -0.40 0.94 16 4 C -0.15 -1.28 9.88 -26.70 -0.26 -1.55 16 5 C -0.19 -1.90 5.91 -91.77 -0.54 -2.44 16 6 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 7 C 0.54 7.65 7.61 -10.98 -0.08 7.56 16 8 O -0.54 -10.11 16.26 5.55 0.09 -10.02 16 9 N -0.73 -9.46 5.56 -60.29 -0.33 -9.80 16 10 C 0.14 2.33 4.96 -4.04 -0.02 2.31 16 11 C -0.14 -2.36 5.81 -27.88 -0.16 -2.52 16 12 C 0.44 10.33 7.78 -10.98 -0.09 10.24 16 13 O -0.59 -16.25 15.56 5.55 0.09 -16.16 16 14 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 15 C -0.30 -8.40 9.68 -14.94 -0.14 -8.55 16 16 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 17 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 18 N -0.90 -24.29 13.05 55.50 0.72 -23.57 16 19 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 H 0.06 0.33 7.90 -51.93 -0.41 -0.08 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.10 0.65 8.05 -51.93 -0.42 0.24 16 27 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.40 3.79 8.47 -40.82 -0.35 3.44 16 29 H 0.07 1.42 8.10 -51.93 -0.42 1.00 16 30 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.39 9.33 7.90 -40.82 -0.32 9.00 16 34 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 LS Contribution 300.34 15.07 4.53 4.53 Total: -1.00 -33.36 300.34 -6.33 -39.69 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -4.78 Total: 10.07 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -1.56 Total: 3.40 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 0.33 Total: -47.47 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: 0.18 Total: -26.18 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.36 -6.33 -39.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701255838.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.786 kcal (2) G-P(sol) polarization free energy of solvation -33.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds