Wall clock time and date at job start Mon Mar 30 2020 03:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 115.56367 * 2 1 4 4 C 1.53077 * 117.51224 * 214.30572 * 2 1 3 5 5 C 1.53004 * 117.50068 * 145.69593 * 2 1 3 6 6 C 1.52999 * 117.49856 * 215.00050 * 5 2 1 7 7 N 1.46497 * 117.49855 * 359.97438 * 5 2 1 8 8 C 1.34777 * 119.99973 * 279.63226 * 7 5 2 9 9 O 1.21440 * 119.99670 * 355.00122 * 8 7 5 10 10 C 1.48832 * 120.00114 * 174.72639 * 8 7 5 11 11 O 1.21504 * 119.99931 * 0.27703 * 10 8 7 12 12 N 1.34777 * 119.99643 * 180.27246 * 10 8 7 13 13 C 1.36128 * 119.99347 * 180.02562 * 12 10 8 14 14 H 1.07999 * 120.00107 * 0.02562 * 13 12 10 15 15 C 1.39584 * 119.99652 * 180.02562 * 13 12 10 16 16 N 1.31019 * 120.00021 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99941 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47180 * 90.00193 * 17 15 13 19 19 H 1.48502 * 109.47187 * 210.00192 * 17 15 13 20 20 H 1.48494 * 109.47154 * 329.99900 * 17 15 13 21 21 H 1.09005 * 109.46735 * 274.30619 * 1 2 3 22 22 H 1.08998 * 109.47471 * 34.30487 * 1 2 3 23 23 H 1.08997 * 109.47522 * 154.30964 * 1 2 3 24 24 H 1.08996 * 109.47293 * 205.68992 * 3 2 1 25 25 H 1.09001 * 109.46821 * 325.69693 * 3 2 1 26 26 H 1.09006 * 109.46716 * 85.69136 * 3 2 1 27 27 H 1.08995 * 117.49589 * 145.03283 * 4 2 1 28 28 H 1.08999 * 117.53171 * 359.97438 * 4 2 1 29 29 H 1.08996 * 109.47122 * 199.69637 * 6 5 2 30 30 H 1.09007 * 109.46856 * 319.69332 * 6 5 2 31 31 H 1.08995 * 109.47167 * 79.69112 * 6 5 2 32 32 H 0.96998 * 120.00176 * 99.62654 * 7 5 2 33 33 H 0.96992 * 120.00325 * 0.02562 * 12 10 8 34 34 H 0.97000 * 120.00242 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2371 -1.1215 -0.7652 5 6 2.2365 -1.1211 0.7649 6 6 3.5488 -0.7760 1.4717 7 7 1.3962 -2.1120 1.4417 8 6 0.8502 -1.8266 2.6403 9 8 1.1271 -0.7857 3.2012 10 6 -0.0969 -2.7842 3.2737 11 8 -0.3738 -3.8257 2.7125 12 7 -0.6471 -2.4961 4.4699 13 6 -1.5129 -3.3723 5.0494 14 1 -1.7585 -4.2983 4.5509 15 6 -2.0832 -3.0738 6.2879 16 7 -1.7848 -1.9506 6.8929 17 14 -3.2718 -4.2757 7.0829 18 1 -2.5167 -5.2258 7.9386 19 1 -4.2485 -3.5285 7.9154 20 1 -3.9952 -5.0282 6.0267 21 1 -0.3633 0.0772 1.0248 22 1 -0.3634 0.8489 -0.5792 23 1 -0.3634 -0.9260 -0.4455 24 1 3.1824 1.3084 -0.4455 25 1 1.5811 2.0743 -0.5792 26 1 2.2773 1.7413 1.0248 27 1 3.1723 -0.8755 -1.2682 28 1 1.6126 -1.8597 -1.2683 29 1 4.1083 -1.6909 1.6661 30 1 4.1406 -0.1160 0.8373 31 1 3.3324 -0.2749 2.4152 32 1 1.2328 -2.9736 1.0271 33 1 -0.4262 -1.6646 4.9177 34 1 -2.1814 -1.7429 7.7534 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702425689.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:24 Heat of formation + Delta-G solvation = -58.065879 kcal Electronic energy + Delta-G solvation = -17446.807887 eV Core-core repulsion = 14573.235609 eV Total energy + Delta-G solvation = -2873.572278 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.01606 -38.37787 -36.77729 -34.35607 -32.83457 -31.36801 -29.93744 -27.93965 -26.77054 -25.85401 -23.26021 -20.80086 -19.61652 -18.32066 -18.22117 -16.85424 -15.74198 -15.27376 -15.03406 -14.55688 -14.22170 -13.90280 -13.70493 -13.21903 -12.85563 -12.71161 -12.36383 -12.16716 -12.08045 -11.94984 -11.78248 -11.72491 -11.19797 -11.04119 -10.53909 -10.42243 -10.35388 -9.96417 -9.71941 -9.69069 -8.52984 -8.22259 -8.21592 -6.66605 -3.99116 2.47291 3.15231 3.15571 3.20635 3.34772 3.70454 4.05863 4.29790 4.63122 4.73252 4.89387 5.06762 5.15094 5.20548 5.58084 5.68268 5.71973 5.78313 5.84671 5.88925 5.97590 6.01369 6.06529 6.11595 6.27632 6.40749 6.46020 6.93665 7.31354 7.71787 7.91721 8.34763 8.67476 8.97345 9.32613 9.85676 10.48277 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.044735 B = 0.005472 C = 0.005365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.751142 B = 5116.111257 C = 5217.829802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.122 4.122 3 C -0.111 4.111 4 C -0.170 4.170 5 C 0.112 3.888 6 C -0.122 4.122 7 N -0.685 5.685 8 C 0.518 3.482 9 O -0.538 6.538 10 C 0.394 3.606 11 O -0.598 6.598 12 N -0.499 5.499 13 C -0.306 4.306 14 H 0.112 0.888 15 C 0.031 3.969 16 N -0.869 5.869 17 Si 0.939 3.061 18 H -0.273 1.273 19 H -0.280 1.280 20 H -0.265 1.265 21 H 0.063 0.937 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.410 0.590 33 H 0.405 0.595 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.758 4.112 -10.930 13.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.123 4.123 3 C -0.169 4.169 4 C -0.207 4.207 5 C 0.024 3.976 6 C -0.180 4.180 7 N -0.338 5.338 8 C 0.303 3.697 9 O -0.414 6.414 10 C 0.178 3.822 11 O -0.487 6.487 12 N -0.134 5.134 13 C -0.437 4.437 14 H 0.130 0.870 15 C -0.176 4.176 16 N -0.507 5.507 17 Si 0.764 3.236 18 H -0.199 1.199 19 H -0.205 1.205 20 H -0.189 1.189 21 H 0.082 0.918 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.246 0.754 33 H 0.240 0.760 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.698 4.289 -10.685 13.320 hybrid contribution -0.519 -0.503 0.475 0.865 sum 6.179 3.786 -10.211 12.520 Atomic orbital electron populations 1.21269 0.91734 1.01485 1.02454 1.21975 0.95455 0.91579 1.03292 1.21338 0.99389 0.93829 1.02317 1.23661 1.02737 1.01681 0.92658 1.20735 0.93053 0.93820 0.89996 1.21507 0.93444 1.01530 1.01527 1.45029 1.50156 1.18219 1.20391 1.20640 0.81024 0.86944 0.81076 1.90667 1.61398 1.26643 1.62706 1.19005 0.88863 0.88968 0.85344 1.90579 1.66685 1.27071 1.64377 1.41558 1.36017 1.20344 1.15431 1.19876 1.19926 1.02185 1.01693 0.87021 1.25580 0.98330 0.97174 0.96482 1.69485 1.42055 1.22725 1.16468 0.85724 0.79310 0.79480 0.79063 1.19897 1.20521 1.18915 0.91838 0.92398 0.92492 0.92555 0.92309 0.91666 0.88024 0.88376 0.92247 0.91767 0.90500 0.75378 0.76005 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 9.17 37.16 0.34 -1.27 16 2 C -0.12 -1.62 2.70 -154.47 -0.42 -2.03 16 3 C -0.11 -1.26 8.72 37.16 0.32 -0.94 16 4 C -0.17 -1.94 9.44 -26.69 -0.25 -2.19 16 5 C 0.11 1.62 2.31 -131.82 -0.30 1.32 16 6 C -0.12 -1.66 9.03 37.16 0.34 -1.32 16 7 N -0.68 -12.04 4.86 -48.22 -0.23 -12.27 16 8 C 0.52 11.29 7.08 -11.87 -0.08 11.21 16 9 O -0.54 -12.45 15.26 5.42 0.08 -12.37 16 10 C 0.39 9.99 7.82 -11.87 -0.09 9.89 16 11 O -0.60 -16.15 16.04 5.36 0.09 -16.06 16 12 N -0.50 -13.42 5.25 -11.59 -0.06 -13.48 16 13 C -0.31 -8.48 9.67 -15.14 -0.15 -8.62 16 14 H 0.11 3.16 7.15 -52.49 -0.38 2.78 16 15 C 0.03 0.81 5.51 -17.40 -0.10 0.72 16 16 N -0.87 -23.36 13.03 55.53 0.72 -22.64 16 17 Si 0.94 20.14 29.56 -169.99 -5.02 15.11 16 18 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 19 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 20 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 21 H 0.06 1.10 7.63 -51.93 -0.40 0.71 16 22 H 0.06 0.71 7.92 -51.93 -0.41 0.30 16 23 H 0.06 0.81 7.90 -51.93 -0.41 0.40 16 24 H 0.06 0.53 7.28 -51.93 -0.38 0.15 16 25 H 0.06 0.59 7.92 -51.93 -0.41 0.18 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.10 0.95 8.05 -51.93 -0.42 0.53 16 28 H 0.10 1.07 8.05 -51.93 -0.42 0.65 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.69 6.97 -51.93 -0.36 0.33 16 31 H 0.08 1.23 7.05 -51.93 -0.37 0.87 16 32 H 0.41 6.87 8.30 -40.82 -0.34 6.53 16 33 H 0.40 10.95 7.35 -40.82 -0.30 10.65 16 34 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 LS Contribution 292.93 15.07 4.41 4.41 Total: -1.00 -30.16 292.93 -4.97 -35.13 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -4.57 Total: 15.42 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -0.39 Total: 6.76 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.43 Total: -48.40 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: 0.17 Total: -28.43 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.16 -4.97 -35.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702425689.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.935 kcal (2) G-P(sol) polarization free energy of solvation -30.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds