Wall clock time and date at job start Mon Mar 30 2020 03:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 115.56367 * 2 1 4 4 C 1.53077 * 117.51224 * 214.30572 * 2 1 3 5 5 C 1.53004 * 117.50068 * 145.69593 * 2 1 3 6 6 C 1.52999 * 117.49856 * 215.00050 * 5 2 1 7 7 N 1.46497 * 117.49855 * 359.97438 * 5 2 1 8 8 C 1.34777 * 119.99973 * 279.63226 * 7 5 2 9 9 O 1.21440 * 119.99670 * 355.00122 * 8 7 5 10 10 C 1.48832 * 120.00114 * 174.72639 * 8 7 5 11 11 O 1.21504 * 119.99931 * 0.27703 * 10 8 7 12 12 N 1.34777 * 119.99643 * 180.27246 * 10 8 7 13 13 C 1.36128 * 119.99347 * 180.02562 * 12 10 8 14 14 H 1.07999 * 120.00107 * 0.02562 * 13 12 10 15 15 C 1.39584 * 119.99652 * 180.02562 * 13 12 10 16 16 N 1.31019 * 120.00021 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99941 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47180 * 90.00193 * 17 15 13 19 19 H 1.48502 * 109.47187 * 210.00192 * 17 15 13 20 20 H 1.48494 * 109.47154 * 329.99900 * 17 15 13 21 21 H 1.09005 * 109.46735 * 274.30619 * 1 2 3 22 22 H 1.08998 * 109.47471 * 34.30487 * 1 2 3 23 23 H 1.08997 * 109.47522 * 154.30964 * 1 2 3 24 24 H 1.08996 * 109.47293 * 205.68992 * 3 2 1 25 25 H 1.09001 * 109.46821 * 325.69693 * 3 2 1 26 26 H 1.09006 * 109.46716 * 85.69136 * 3 2 1 27 27 H 1.08995 * 117.49589 * 145.03283 * 4 2 1 28 28 H 1.08999 * 117.53171 * 359.97438 * 4 2 1 29 29 H 1.08996 * 109.47122 * 199.69637 * 6 5 2 30 30 H 1.09007 * 109.46856 * 319.69332 * 6 5 2 31 31 H 1.08995 * 109.47167 * 79.69112 * 6 5 2 32 32 H 0.96998 * 120.00176 * 99.62654 * 7 5 2 33 33 H 0.96992 * 120.00325 * 0.02562 * 12 10 8 34 34 H 0.97000 * 120.00242 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2371 -1.1215 -0.7652 5 6 2.2365 -1.1211 0.7649 6 6 3.5488 -0.7760 1.4717 7 7 1.3962 -2.1120 1.4417 8 6 0.8502 -1.8266 2.6403 9 8 1.1271 -0.7857 3.2012 10 6 -0.0969 -2.7842 3.2737 11 8 -0.3738 -3.8257 2.7125 12 7 -0.6471 -2.4961 4.4699 13 6 -1.5129 -3.3723 5.0494 14 1 -1.7585 -4.2983 4.5509 15 6 -2.0832 -3.0738 6.2879 16 7 -1.7848 -1.9506 6.8929 17 14 -3.2718 -4.2757 7.0829 18 1 -2.5167 -5.2258 7.9386 19 1 -4.2485 -3.5285 7.9154 20 1 -3.9952 -5.0282 6.0267 21 1 -0.3633 0.0772 1.0248 22 1 -0.3634 0.8489 -0.5792 23 1 -0.3634 -0.9260 -0.4455 24 1 3.1824 1.3084 -0.4455 25 1 1.5811 2.0743 -0.5792 26 1 2.2773 1.7413 1.0248 27 1 3.1723 -0.8755 -1.2682 28 1 1.6126 -1.8597 -1.2683 29 1 4.1083 -1.6909 1.6661 30 1 4.1406 -0.1160 0.8373 31 1 3.3324 -0.2749 2.4152 32 1 1.2328 -2.9736 1.0271 33 1 -0.4262 -1.6646 4.9177 34 1 -2.1814 -1.7429 7.7534 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702425689.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:24 Heat of formation + Delta-G solvation = -79.877771 kcal Electronic energy + Delta-G solvation = -17447.753721 eV Core-core repulsion = 14573.235609 eV Total energy + Delta-G solvation = -2874.518113 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.54800 -39.98483 -38.54019 -36.38091 -34.37411 -33.40432 -31.10059 -28.90193 -28.00246 -27.69320 -25.06849 -21.94297 -21.35242 -20.38288 -19.51232 -18.64864 -17.46057 -16.81091 -16.57890 -16.36162 -15.73088 -15.56544 -14.85143 -14.79263 -14.44584 -14.15867 -13.68616 -13.61578 -13.28986 -13.22598 -12.98017 -12.94011 -12.65983 -12.58707 -12.25408 -12.10979 -12.02703 -11.67885 -11.16951 -10.88071 -10.28941 -10.16231 -9.82953 -8.67103 -6.12539 0.62159 1.39979 1.46628 1.54712 1.78391 2.28014 2.37043 2.66664 3.14492 3.23846 3.58446 3.76306 3.90182 4.03007 4.15894 4.50186 4.68090 4.76032 4.79139 4.84710 4.88043 5.01720 5.02708 5.06176 5.23593 5.24415 5.31116 5.42760 5.53737 5.67875 6.18349 6.40397 6.81896 7.05897 7.27798 7.78681 8.48773 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.044735 B = 0.005472 C = 0.005365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.751142 B = 5116.111257 C = 5217.829802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.132 4.132 3 C -0.109 4.109 4 C -0.132 4.132 5 C 0.074 3.926 6 C -0.116 4.116 7 N -0.666 5.666 8 C 0.525 3.475 9 O -0.556 6.556 10 C 0.388 3.612 11 O -0.619 6.619 12 N -0.511 5.511 13 C -0.347 4.347 14 H 0.098 0.902 15 C -0.004 4.004 16 N -0.897 5.897 17 Si 1.011 2.989 18 H -0.264 1.264 19 H -0.266 1.266 20 H -0.264 1.264 21 H 0.023 0.977 22 H 0.079 0.921 23 H 0.054 0.946 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.136 0.864 28 H 0.106 0.894 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.044 0.956 32 H 0.414 0.586 33 H 0.400 0.600 34 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.443 4.188 -12.435 15.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.133 4.133 3 C -0.166 4.166 4 C -0.169 4.169 5 C -0.013 4.013 6 C -0.174 4.174 7 N -0.318 5.318 8 C 0.308 3.692 9 O -0.434 6.434 10 C 0.173 3.827 11 O -0.508 6.508 12 N -0.145 5.145 13 C -0.476 4.476 14 H 0.116 0.884 15 C -0.209 4.209 16 N -0.534 5.534 17 Si 0.831 3.169 18 H -0.189 1.189 19 H -0.191 1.191 20 H -0.188 1.188 21 H 0.042 0.958 22 H 0.097 0.903 23 H 0.073 0.927 24 H 0.101 0.899 25 H 0.090 0.910 26 H 0.064 0.936 27 H 0.154 0.846 28 H 0.124 0.876 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.063 0.937 32 H 0.251 0.749 33 H 0.235 0.765 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.409 4.374 -12.224 14.948 hybrid contribution -0.686 -0.490 0.845 1.193 sum 6.723 3.885 -11.379 13.775 Atomic orbital electron populations 1.21255 0.93069 1.02386 1.00230 1.22122 0.94715 0.92930 1.03579 1.21351 1.00906 0.92683 1.01639 1.23801 1.03671 0.99678 0.89730 1.21197 0.93291 0.94542 0.92223 1.21468 0.93343 1.01973 1.00655 1.44960 1.49068 1.19011 1.18758 1.19980 0.80926 0.85921 0.82368 1.90660 1.62156 1.27005 1.63594 1.19723 0.88818 0.89288 0.84878 1.90538 1.67430 1.28113 1.64766 1.41652 1.36545 1.20176 1.16094 1.19977 1.21991 1.02518 1.03144 0.88412 1.26550 0.99319 0.98875 0.96120 1.69554 1.42755 1.24081 1.17027 0.84687 0.77007 0.77173 0.77999 1.18893 1.19058 1.18804 0.95783 0.90258 0.92687 0.89948 0.91035 0.93597 0.84581 0.87595 0.92067 0.88379 0.93714 0.74924 0.76535 0.90088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.14 9.17 71.98 0.66 -2.48 16 2 C -0.13 -3.22 2.70 -52.15 -0.14 -3.36 16 3 C -0.11 -2.16 8.72 71.98 0.63 -1.53 16 4 C -0.13 -2.48 9.44 30.62 0.29 -2.19 16 5 C 0.07 2.02 2.31 3.61 0.01 2.03 16 6 C -0.12 -2.97 9.03 71.98 0.65 -2.32 16 7 N -0.67 -23.28 4.86 -424.81 -2.07 -25.35 16 8 C 0.52 23.48 7.08 87.08 0.62 24.10 16 9 O -0.56 -26.62 15.26 -3.53 -0.05 -26.68 16 10 C 0.39 20.39 7.82 87.08 0.68 21.07 16 11 O -0.62 -34.34 16.04 -3.73 -0.06 -34.40 16 12 N -0.51 -28.64 5.25 -308.86 -1.62 -30.26 16 13 C -0.35 -19.82 9.67 84.35 0.82 -19.01 16 14 H 0.10 5.74 7.15 -2.91 -0.02 5.72 16 15 C 0.00 -0.23 5.51 85.14 0.47 0.23 16 16 N -0.90 -48.80 13.03 21.76 0.28 -48.51 16 17 Si 1.01 41.18 29.56 68.60 2.03 43.21 16 18 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 19 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 20 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 21 H 0.02 0.84 7.63 -2.38 -0.02 0.82 16 22 H 0.08 1.82 7.92 -2.39 -0.02 1.80 16 23 H 0.05 1.51 7.90 -2.39 -0.02 1.49 16 24 H 0.08 1.19 7.28 -2.39 -0.02 1.18 16 25 H 0.07 1.24 7.92 -2.39 -0.02 1.22 16 26 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.14 1.72 8.05 -2.39 -0.02 1.70 16 28 H 0.11 1.89 8.05 -2.39 -0.02 1.87 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.10 1.78 6.97 -2.38 -0.02 1.77 16 31 H 0.04 1.42 7.05 -2.39 -0.02 1.41 16 32 H 0.41 13.68 8.30 -92.71 -0.77 12.91 16 33 H 0.40 22.71 7.35 -92.71 -0.68 22.03 16 34 H 0.29 14.37 8.30 -92.71 -0.77 13.60 16 Total: -1.00 -67.29 292.93 2.87 -64.43 By element: Atomic # 1 Polarization: 41.35 SS G_CDS: -0.32 Total: 41.03 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: 4.68 Total: 16.54 kcal Atomic # 7 Polarization: -100.73 SS G_CDS: -3.40 Total: -104.13 kcal Atomic # 8 Polarization: -60.97 SS G_CDS: -0.11 Total: -61.08 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -67.29 2.87 -64.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702425689.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.451 kcal (2) G-P(sol) polarization free energy of solvation -67.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds