Wall clock time and date at job start Mon Mar 30 2020 03:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 115.55054 * 2 1 4 4 C 1.52998 * 117.50305 * 145.70716 * 2 1 3 5 5 C 1.52997 * 117.50247 * 214.33182 * 2 1 3 6 6 C 1.53005 * 117.49664 * 0.02562 * 5 2 1 7 7 C 1.53002 * 117.50142 * 145.02061 * 5 2 1 8 8 N 1.46505 * 109.46923 * 294.72516 * 7 5 2 9 9 C 1.34776 * 119.99480 * 174.62086 * 8 7 5 10 10 O 1.21433 * 120.00569 * 359.97438 * 9 8 7 11 11 C 1.48833 * 119.99680 * 180.02562 * 9 8 7 12 12 O 1.21505 * 119.99677 * 359.97438 * 11 9 8 13 13 N 1.34775 * 120.00279 * 179.97438 * 11 9 8 14 14 C 1.36121 * 120.00216 * 179.97438 * 13 11 9 15 15 H 1.07991 * 119.99649 * 0.02562 * 14 13 11 16 16 C 1.39582 * 119.99684 * 179.97438 * 14 13 11 17 17 N 1.31016 * 120.00366 * 359.73149 * 16 14 13 18 18 Si 1.86800 * 119.99579 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47156 * 269.72530 * 18 16 14 20 20 H 1.48501 * 109.47446 * 29.72804 * 18 16 14 21 21 H 1.48506 * 109.47156 * 149.72819 * 18 16 14 22 22 H 1.08994 * 109.46830 * 205.66692 * 1 2 3 23 23 H 1.09002 * 109.47128 * 325.67204 * 1 2 3 24 24 H 1.09009 * 109.46933 * 85.66866 * 1 2 3 25 25 H 1.09006 * 117.49201 * 0.02562 * 4 2 1 26 26 H 1.08995 * 117.50391 * 214.98736 * 4 2 1 27 27 H 1.09001 * 109.46656 * 199.96885 * 6 5 2 28 28 H 1.08997 * 109.47045 * 319.96526 * 6 5 2 29 29 H 1.08999 * 109.46547 * 79.96938 * 6 5 2 30 30 H 1.08996 * 109.47215 * 174.72105 * 7 5 2 31 31 H 1.08995 * 109.47030 * 54.71938 * 7 5 2 32 32 H 0.96997 * 120.00202 * 354.61493 * 8 7 5 33 33 H 0.97006 * 119.99892 * 359.97438 * 13 11 9 34 34 H 0.96997 * 119.99997 * 0.26576 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1212 0.7646 5 6 2.2365 -1.1206 -0.7654 6 6 1.3589 -2.1553 -1.4727 7 6 3.5491 -0.7753 -1.4717 8 7 3.2872 0.1854 -2.5463 9 6 4.3136 0.7186 -3.2383 10 8 5.4553 0.4032 -2.9707 11 6 4.0477 1.6950 -4.3296 12 8 2.9053 2.0109 -4.5971 13 7 5.0739 2.2287 -5.0213 14 6 4.8307 3.1213 -6.0198 15 1 3.8154 3.4021 -6.2575 16 6 5.8937 3.6743 -6.7357 17 7 7.1258 3.3384 -6.4431 18 14 5.5599 4.8998 -8.1054 19 1 5.4038 4.1741 -9.3917 20 1 4.3137 5.6499 -7.8059 21 1 6.6968 5.8496 -8.2078 22 1 -0.3633 -0.9262 0.4451 23 1 -0.3633 0.8487 0.5795 24 1 -0.3633 0.0776 -1.0248 25 1 1.6112 -1.8591 1.2673 26 1 3.1715 -0.8755 1.2680 27 1 1.9416 -3.0566 -1.6632 28 1 0.5057 -2.4011 -0.8405 29 1 1.0043 -1.7452 -2.4183 30 1 3.9846 -1.6816 -1.8925 31 1 4.2434 -0.3377 -0.7544 32 1 2.3753 0.4375 -2.7599 33 1 5.9860 1.9767 -4.8075 34 1 7.2991 2.7024 -5.7316 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704021857.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:31 Heat of formation + Delta-G solvation = -62.902030 kcal Electronic energy + Delta-G solvation = -16939.154538 eV Core-core repulsion = 14065.372549 eV Total energy + Delta-G solvation = -2873.781989 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.81696 -38.74015 -37.21115 -34.78607 -33.74876 -31.20838 -29.86793 -28.11149 -26.78724 -25.11899 -22.52056 -21.42278 -19.65805 -18.95704 -18.20235 -17.50104 -15.96691 -15.60531 -15.28551 -14.62818 -14.37746 -14.26717 -13.80630 -13.57979 -13.19326 -12.98553 -12.97513 -12.36440 -12.18965 -12.14148 -11.64903 -11.38696 -11.14053 -11.07253 -10.58346 -10.29408 -10.09497 -10.05647 -9.75086 -9.74486 -8.78594 -8.33005 -8.28129 -7.02014 -4.05596 2.37347 3.14843 3.27116 3.30882 3.47010 3.72773 4.16834 4.24188 4.41612 4.54996 4.69846 4.83934 4.95443 5.15772 5.17111 5.39741 5.56438 5.60256 5.61466 5.69072 5.71141 5.80716 5.84686 5.88237 5.98524 6.08718 6.20899 6.72067 7.50282 7.76963 7.86876 8.26788 8.45002 8.70668 9.23641 9.67605 10.40077 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.047010 B = 0.004694 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.468793 B = 5963.637974 C = 6279.660787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.144 4.144 3 H 0.106 0.894 4 C -0.161 4.161 5 C -0.143 4.143 6 C -0.114 4.114 7 C 0.157 3.843 8 N -0.709 5.709 9 C 0.512 3.488 10 O -0.552 6.552 11 C 0.396 3.604 12 O -0.591 6.591 13 N -0.513 5.513 14 C -0.384 4.384 15 H 0.109 0.891 16 C -0.001 4.001 17 N -0.868 5.868 18 Si 1.099 2.901 19 H -0.280 1.280 20 H -0.279 1.279 21 H -0.278 1.278 22 H 0.055 0.945 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.411 0.589 33 H 0.388 0.612 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.391 -7.797 10.868 16.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.162 4.162 3 H 0.125 0.875 4 C -0.198 4.198 5 C -0.144 4.144 6 C -0.171 4.171 7 C 0.034 3.966 8 N -0.362 5.362 9 C 0.296 3.704 10 O -0.430 6.430 11 C 0.181 3.819 12 O -0.479 6.479 13 N -0.148 5.148 14 C -0.514 4.514 15 H 0.127 0.873 16 C -0.208 4.208 17 N -0.505 5.505 18 Si 0.923 3.077 19 H -0.206 1.206 20 H -0.205 1.205 21 H -0.203 1.203 22 H 0.074 0.926 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.115 0.885 26 H 0.114 0.886 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.247 0.753 33 H 0.223 0.777 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.566 -6.872 9.751 14.686 hybrid contribution -0.539 -1.131 1.333 1.829 sum -9.105 -8.003 11.085 16.426 Atomic orbital electron populations 1.21360 0.92652 1.01639 1.02189 1.22446 0.95457 0.94647 1.03636 0.87547 1.23208 1.02703 1.01461 0.92453 1.21786 0.97840 1.01051 0.93677 1.21318 0.98370 0.97198 1.00241 1.20794 0.94157 0.92615 0.89057 1.45630 1.10524 1.44738 1.35325 1.20654 0.84653 0.81882 0.83162 1.90675 1.21693 1.62158 1.68442 1.18879 0.86313 0.88839 0.87846 1.90584 1.20718 1.65746 1.70864 1.41603 1.08154 1.36072 1.29018 1.20785 0.98240 1.20764 1.11630 0.87300 1.26928 0.91457 1.00545 1.01864 1.70665 1.20298 1.30355 1.29171 0.83044 0.75993 0.74854 0.73817 1.20639 1.20465 1.20282 0.92622 0.92170 0.91844 0.88506 0.88630 0.92068 0.92188 0.91830 0.91285 0.91328 0.75338 0.77720 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 9.06 37.16 0.34 -0.74 16 2 C -0.14 -1.50 6.09 -90.62 -0.55 -2.05 16 3 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 4 C -0.16 -1.49 9.51 -26.73 -0.25 -1.75 16 5 C -0.14 -1.56 2.11 -154.51 -0.33 -1.89 16 6 C -0.11 -1.11 9.12 37.16 0.34 -0.77 16 7 C 0.16 2.21 5.58 -4.04 -0.02 2.19 16 8 N -0.71 -12.30 5.51 -60.93 -0.34 -12.64 16 9 C 0.51 11.25 7.87 -11.87 -0.09 11.15 16 10 O -0.55 -12.98 16.46 5.42 0.09 -12.89 16 11 C 0.40 10.12 7.82 -11.87 -0.09 10.02 16 12 O -0.59 -16.09 16.03 5.36 0.09 -16.01 16 13 N -0.51 -13.77 5.24 -11.59 -0.06 -13.83 16 14 C -0.38 -10.74 9.67 -15.15 -0.15 -10.89 16 15 H 0.11 3.14 7.15 -52.49 -0.38 2.77 16 16 C 0.00 -0.02 5.51 -17.40 -0.10 -0.12 16 17 N -0.87 -24.16 13.66 55.53 0.76 -23.40 16 18 Si 1.10 23.30 29.93 -169.99 -5.09 18.21 16 19 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 20 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 22 H 0.05 0.43 7.28 -51.93 -0.38 0.05 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 25 H 0.10 0.77 8.05 -51.93 -0.42 0.35 16 26 H 0.10 0.87 8.08 -51.93 -0.42 0.45 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.49 6.96 -51.93 -0.36 0.13 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 31 H 0.07 1.00 7.93 -51.93 -0.41 0.59 16 32 H 0.41 6.88 7.94 -40.82 -0.32 6.56 16 33 H 0.39 10.17 6.18 -40.82 -0.25 9.92 16 34 H 0.27 7.47 6.78 -40.82 -0.28 7.20 16 LS Contribution 295.67 15.07 4.46 4.46 Total: -1.00 -31.34 295.67 -5.55 -36.89 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -4.55 Total: 14.04 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -0.91 Total: 5.17 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: 0.36 Total: -49.87 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: 0.18 Total: -28.89 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -5.09 Total: 18.21 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.34 -5.55 -36.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704021857.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.011 kcal (2) G-P(sol) polarization free energy of solvation -31.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds